Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Forward (+)

34236787 .. 34240846

Gene Structure 4060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0214400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCGGAGCAAAGATCCGGGTTAAGAATCCGAGACGCCAGCCCGGACTTGGTTATTTACACACTCGAGTCCAGCCTCTTCTCCTCTTCCGCTTCCGCCAGCGTTGACCGCTGCTCCTTCGCCTCCGAAGCCTTTGACCACGACTCCACCGCCTCCGAGATCTCTCCGAACTCGGCGGCGCACCGTCACCAGGTTGAAGAGAGCTCCAGTGGTCCGGATCGCGATCCAGATCCGAAGACGAAGCCCGCTTTACACATCACCAGCCACCACCACGGTCGTCGATCCAGAAAAGGAGAAAAGGCCAAAGTTCCAAAGCAAGACAGCGACGCCGACTTGGTTCTTGATTCAGCACGAAGCTCTTTCTCTCTCGCCTTAAAATATGAAAAGCTTGATGGGGTTAAGGATGCAGCCACCAATGTATCTCGTGCAGTTTCACGAAGGGACATGGCAACCCAAATGAGCCCTGATGACTTTGAAAAGCTGGACGGAGATAGGCCAAGGTTAAGATTGCTCGCAGGACCAATATTGCCATGTCTTGCTGTTGGTATTCCGGAGCAAAAGACCGACAAGGATTGTGGATATTTTATAATGAGATACATGAAGGAAATAGTGGAGGATAAAACCTTGGACATTTTCAGCAAGTGGGAGAGAAGAAGTAAAGCAGCATATTCCCAGGAGGATATCGATGTGGTCAGAACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

234

Amino Acids

26.07

Weight (kDa)

6.01

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	2 cut(s)	214, 550
AciI	CCGC	6 cut(s)	90, 96, 109, 150, 176, 246
AclWI	GGATC	5 cut(s)	9, 218, 224, 225, 276
AcyI	GRCGYC	2 cut(s)	36, 327
AfiI	CCNNNNNNNGG	2 cut(s)	49, 190
AgsI	TTSAA	2 cut(s)	197, 476
AjnI	CCWGG	2 cut(s)	189, 672
AluBI	AGCT	4 cut(s)	204, 357, 388, 481
AluI	AGCT	4 cut(s)	204, 357, 388, 481
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	5 cut(s)	9, 218, 224, 225, 276
Ama87I	CYCGRG	1 cut(s)	65
Aor13HI	TCCGGA	2 cut(s)	214, 550
AoxI	GGCC	2 cut(s)	300, 494
ApeKI	GCWGC	3 cut(s)	111, 407, 662
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	212, 518
AsuC2I	CCSGG	2 cut(s)	19, 44
AsuHPI	GGTGA	2 cut(s)	179, 250
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	212, 518
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BanII	GRGCYC	2 cut(s)	206, 464
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	98, 419, 674
BccI	CCATC	1 cut(s)	386
BciT130I	CCWGG	2 cut(s)	191, 674
BcnI	CCSGG	2 cut(s)	19, 44
BcoDI	GTCTC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	4 cut(s)	112, 177, 408, 663
BlsI	GCNGC	4 cut(s)	113, 178, 409, 664
Bme1390I	CCNGG	4 cut(s)	19, 44, 191, 674
Bme18I	GGWCC	2 cut(s)	212, 518
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	212, 518
BmrFI	CCNGG	4 cut(s)	19, 44, 191, 674
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	19, 44
Bsa29I	ATCGAT	1 cut(s)	684
BsaBI	GATNNNNATC	2 cut(s)	222, 228
BsaHI	GRCGYC	2 cut(s)	36, 327
BsaJI	CCNNGG	4 cut(s)	271, 497, 624, 672
BsaWI	WCCGGW	2 cut(s)	214, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 190
Bse1I	ACTGG	1 cut(s)	207
Bse8I	GATNNNNATC	2 cut(s)	222, 228
BseAI	TCCGGA	2 cut(s)	214, 550
BseBI	CCWGG	2 cut(s)	191, 674
BseCI	ATCGAT	1 cut(s)	684
BseDI	CCNNGG	4 cut(s)	271, 497, 624, 672
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	2 cut(s)	222, 228
BseLI	CCNNNNNNNGG	2 cut(s)	49, 190
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	98, 419, 674
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	302, 496
BshVI	ATCGAT	1 cut(s)	684
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	18, 44, 215, 551
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	49, 190
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	302, 496
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	206, 464
Bsp13I	TCCGGA	2 cut(s)	214, 550
Bsp143I	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	6 cut(s)	90, 96, 109, 150, 176, 246
BspANI	GGCC	2 cut(s)	302, 496
BspCNI	CTCAG	1 cut(s)	691
BspDI	ATCGAT	1 cut(s)	684
BspEI	TCCGGA	2 cut(s)	214, 550
BspFNI	CGCG	1 cut(s)	222
BspPI	GGATC	5 cut(s)	9, 218, 224, 225, 276
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	4 cut(s)	271, 497, 624, 672
BssMI	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
BssNI	GRCGYC	2 cut(s)	36, 327
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	497, 624
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	191, 674
Bst4CI	ACNGT	2 cut(s)	185, 275
Bst6I	CTCTTC	3 cut(s)	83, 91, 192
BstACI	GRCGYC	2 cut(s)	36, 327
BstC8I	GCNNGC	4 cut(s)	40, 100, 246, 513
BstDEI	CTNAG	1 cut(s)	699
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	6 cut(s)	17, 162, 220, 226, 232, 284
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 128
BstNI	CCWGG	2 cut(s)	191, 674
BstSCI	CCNGG	4 cut(s)	17, 42, 189, 672
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	98, 419, 674
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	3 cut(s)	14, 159, 229
BstYI	RGATCY	3 cut(s)	14, 159, 229
Bsu15I	ATCGAT	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	302, 496
BsuTUI	ATCGAT	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	214
BtuMI	TCGCGA	1 cut(s)	222
Cac8I	GCNNGC	4 cut(s)	40, 100, 246, 513
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	212, 518
ClaI	ATCGAT	1 cut(s)	684
CseI	GACGC	2 cut(s)	44, 335
CsiI	ACCWGGT	1 cut(s)	189
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	3 cut(s)	445, 531, 598
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	6 cut(s)	16, 161, 219, 225, 231, 283
DpnII	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
Eam1104I	CTCTTC	3 cut(s)	83, 91, 192
EarI	CTCTTC	3 cut(s)	83, 91, 192
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	497, 624
Eco24I	GRGCYC	2 cut(s)	206, 464
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	2 cut(s)	212, 518
Eco53kI	GAGCTC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	189, 672
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	497, 624
EcoT38I	GRGCYC	2 cut(s)	206, 464
ErhI	CCWWGG	2 cut(s)	497, 624
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	448, 534, 601
FaiI	YATR	6 cut(s)	381, 446, 532, 587, 599, 667
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	3 cut(s)	444, 530, 597
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	112, 177, 408, 663
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	206, 464
Fsp4HI	GCNGC	4 cut(s)	112, 177, 408, 663
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	4 cut(s)	112, 177, 408, 663
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	302, 496
HapII	CCGG	4 cut(s)	18, 44, 215, 551
HgaI	GACGC	2 cut(s)	44, 335
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	2 cut(s)	36, 327
Hin1II	CATG	3 cut(s)	448, 534, 601
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	27, 68, 143, 344
HpaII	CCGG	4 cut(s)	18, 44, 215, 551
HphI	GGTGA	2 cut(s)	179, 250
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	7 cut(s)	7, 32, 127, 157, 168, 234, 695
Hpy188III	TCNNGA	7 cut(s)	215, 221, 227, 285, 341, 435, 551
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	282, 329
HpyAV	CCTTC	3 cut(s)	127, 432, 595
HpyCH4III	ACNGT	2 cut(s)	185, 275
HpyCH4V	TGCA	2 cut(s)	407, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 128
HpyF3I	CTNAG	1 cut(s)	699
Hsp92I	GRCGYC	2 cut(s)	36, 327
Hsp92II	CATG	3 cut(s)	448, 534, 601
HspAI	GCGC	1 cut(s)	179
Kpn2I	TCCGGA	2 cut(s)	214, 550
Kzo9I	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
LmnI	GCTCC	4 cut(s)	7, 119, 209, 553
Lsp1109I	GCAGC	3 cut(s)	98, 419, 674
LweI	GCATC	1 cut(s)	394
MabI	ACCWGGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	6 cut(s)	16, 161, 219, 225, 231, 283
MboI	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
MboII	GAAGA	5 cut(s)	70, 78, 209, 247, 663
MflI	RGATCY	3 cut(s)	14, 159, 229
MhlI	GDGCHC	2 cut(s)	206, 464
MlyI	GAGTC	2 cut(s)	77, 137
MnlI	CCTC	6 cut(s)	86, 94, 133, 163, 607, 670
MroI	TCCGGA	2 cut(s)	214, 550
MseI	TTAA	4 cut(s)	23, 374, 399, 503
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	4 cut(s)	18, 44, 215, 551
MspR9I	CCNGG	4 cut(s)	19, 44, 191, 674
MvaI	CCWGG	2 cut(s)	191, 674
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	108, 128
NciI	CCSGG	2 cut(s)	19, 44
NdeII	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
NlaIII	CATG	3 cut(s)	448, 534, 601
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	185
NruI	TCGCGA	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	27, 344
PkrI	GCNGC	4 cut(s)	113, 178, 409, 664
PleI	GAGTC	2 cut(s)	76, 137
PpsI	GAGTC	2 cut(s)	76, 137
PsiI	TTATAA	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	189, 672
PspGI	CCWGG	2 cut(s)	189, 672
PspPI	GGNCC	2 cut(s)	212, 518
PspXI	VCTCGAGB	1 cut(s)	65
PsuI	RGATCY	3 cut(s)	14, 159, 229
RruI	TCGCGA	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	4 cut(s)	23, 374, 399, 503
SatI	GCNGC	4 cut(s)	112, 177, 408, 663
Sau3AI	GATC	6 cut(s)	14, 159, 217, 223, 229, 281
Sau96I	GGNCC	2 cut(s)	212, 518
SchI	GAGTC	2 cut(s)	77, 137
ScrFI	CCNGG	4 cut(s)	19, 44, 191, 674
SduI	GDGCHC	2 cut(s)	206, 464
SetI	ASST	7 cut(s)	195, 206, 359, 390, 483, 503, 626
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	2 cut(s)	212, 518
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	6 cut(s)	90, 96, 109, 150, 176, 246
SspI	AATATT	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	4 cut(s)	17, 42, 189, 672
StyI	CCWWGG	2 cut(s)	497, 624
TaaI	ACNGT	2 cut(s)	185, 275
TaqI	TCGA	3 cut(s)	66, 280, 684
TaqII	GACCGA	1 cut(s)	578
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	27, 344
Tru1I	TTAA	4 cut(s)	23, 374, 399, 503
Tru9I	TTAA	4 cut(s)	23, 374, 399, 503
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	111, 407, 662
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	396, 614
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	212, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.