Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Forward (+)

34261688 .. 34263948

Gene Structure 2261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAATACGAAATTGGTGCACCAGGTAAAGCCTACACTGATTGGGCAGTTCAAATGGTTGTGGGAACACTAGTTTCCCCTGGGTCCTGTGCAAACAAGATGATGCCCCTGATCCTGTTATTAACGCTTGATATGGCTTCTATTGTGACTACTTCTCTCCAAACAAGGCTTATAAACCAAAGATGTGGACTAAAGCCTAGACTGGATGGTTTACTGAGATATATTGGAGGTGCAGTTCCTTACCGACCAGCTGAGGGTTTGGCATTTTCAGTTGCGAAGTTTATACAAAAGGGTGGATCATTCATTAACTATTACATGGTAAGTACCATGGAGGAACAAATTTTGGGCAAATTGCTAGCTGGTGGTCTTTTCATCGCTGCTAGTTATGATTACGATGCTCCTATGGATGAATATGGAATGTTGGGGCAACCTAAATGGGGCCATTTGAAAAGAGAGAGGCATTCAATGCTAGAAGGTGATGGAACAAATGGAAAGCTTCCTTTGAAACCTATTATATACTTCCAAGAGTACCAAGGCAAATGGTTGAGTTCTTGTCTTGATACTTTAAAGATCAACATGGAATTCCTTCAGTGTTGTATATTTCCTCGCTGTACTTTCAGCATGCCAGATGTTGTCTATTGTGCCATGTTTGTGCACACTCTTCATTCCCTTGGGACACCATTTTTTAACACAGTCAACCACATGGATGTTCTTATATGTAGAACCTTACAATCTATGATATGCTGCTGCACTGAATCTGAAGTTGGTAGATTGGGGAAGTTTCTCTGTGAGACCTTGAAAATTGCTTACTATTGGAAGAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

275

Amino Acids

30.87

Weight (kDa)

7.47

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	69 - 151	6.4e-09	Glycosyl hydrolases family 35
Tho2	PF11262	174 - 274	1.8e-28	Transcription factor/nuclear export subunit protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AclWI	GGATC	2 cut(s)	106, 304
AcsI	RAATTY	2 cut(s)	339, 581
AcuI	CTGAAG	2 cut(s)	572, 780
AfaI	GTAC	3 cut(s)	325, 530, 613
AfiI	CCNNNNNNNGG	2 cut(s)	254, 437
AgsI	TTSAA	5 cut(s)	53, 448, 465, 505, 799
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	22, 79
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 747, 779
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	3 cut(s)	251, 359, 496
AluI	AGCT	3 cut(s)	251, 359, 496
Alw21I	GWGCWC	2 cut(s)	22, 657
Alw26I	GTCTC	1 cut(s)	785
Alw44I	GTGCAC	2 cut(s)	18, 653
AlwI	GGATC	2 cut(s)	106, 304
AoxI	GGCC	1 cut(s)	439
ApaLI	GTGCAC	2 cut(s)	18, 653
ApeKI	GCWGC	3 cut(s)	377, 744, 747
ApoI	RAATTY	2 cut(s)	339, 581
Asp700I	GAANNNNTTC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	84, 439
AsuHPI	GGTGA	1 cut(s)	488
AsuNHI	GCTAGC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	2 cut(s)	22, 657
Bbv12I	GWGCWC	2 cut(s)	22, 657
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	364, 731, 734
BccI	CCATC	2 cut(s)	200, 473
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	24, 81
BcoDI	GTCTC	1 cut(s)	785
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	5 cut(s)	71, 198, 356, 381, 470
BisI	GCNGC	3 cut(s)	378, 745, 748
BlsI	GCNGC	3 cut(s)	379, 746, 749
Bme1390I	CCNGG	2 cut(s)	24, 81
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	84, 439
BmiI	GGNNCC	2 cut(s)	85, 440
BmrFI	CCNGG	2 cut(s)	24, 81
BmsI	GCATC	2 cut(s)	93, 385
BmtI	GCTAGC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	5 cut(s)	79, 80, 327, 532, 670
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 437
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	24, 81
BseDI	CCNNGG	5 cut(s)	79, 80, 327, 532, 670
BseGI	GGATG	3 cut(s)	211, 412, 712
BseLI	CCNNNNNNNGG	2 cut(s)	254, 437
BseMII	CTCAG	2 cut(s)	206, 243
BseNI	ACTGG	1 cut(s)	207
BseSI	GKGCMC	2 cut(s)	22, 657
BseXI	GCAGC	3 cut(s)	364, 731, 734
BsgI	GTGCAG	2 cut(s)	252, 733
BshFI	GGCC	1 cut(s)	441
BsiHKAI	GWGCWC	2 cut(s)	22, 657
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	2 cut(s)	254, 437
BsmAI	GTCTC	1 cut(s)	785
BsmFI	GGGAC	1 cut(s)	688
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	1 cut(s)	785
Bsp1286I	GDGCHC	2 cut(s)	22, 657
Bsp143I	GATC	3 cut(s)	111, 296, 570
Bsp19I	CCATGG	1 cut(s)	327
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	2 cut(s)	207, 244
BspLI	GGNNCC	2 cut(s)	85, 440
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	106, 304
BspTNI	GGTCTC	1 cut(s)	785
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	5 cut(s)	79, 80, 327, 532, 670
BssMI	GATC	3 cut(s)	111, 296, 570
BssT1I	CCWWGG	3 cut(s)	327, 532, 670
Bst2UI	CCWGG	2 cut(s)	24, 81
Bst4CI	ACNGT	1 cut(s)	694
Bst6I	CTCTTC	2 cut(s)	666, 812
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	357, 623
BstDEI	CTNAG	2 cut(s)	215, 252
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	211, 412, 712
BstKTI	GATC	3 cut(s)	114, 299, 573
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	3 cut(s)	111, 296, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNI	CCWGG	2 cut(s)	24, 81
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	22, 79
BstSLI	GKGCMC	2 cut(s)	22, 657
BstV1I	GCAGC	3 cut(s)	364, 731, 734
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	211, 412, 712
BtsIMutI	CAGTG	3 cut(s)	36, 596, 750
Cac8I	GCNNGC	2 cut(s)	357, 623
Cfr13I	GGNCC	2 cut(s)	84, 439
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	324, 529, 612
CviAII	CATG	6 cut(s)	316, 328, 577, 622, 646, 703
CviJI	RGCY	8 cut(s)	32, 137, 169, 196, 251, 359, 441, 496
CviKI_1	RGCY	8 cut(s)	32, 137, 169, 196, 251, 359, 441, 496
CviQI	GTAC	3 cut(s)	324, 529, 612
DdeI	CTNAG	2 cut(s)	215, 252
DpnI	GATC	3 cut(s)	113, 298, 572
DpnII	GATC	3 cut(s)	111, 296, 570
DraI	TTTAAA	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	666, 812
EarI	CTCTTC	2 cut(s)	666, 812
Eco130I	CCWWGG	3 cut(s)	327, 532, 670
Eco31I	GGTCTC	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	572, 780
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	22, 79
EcoT14I	CCWWGG	3 cut(s)	327, 532, 670
ErhI	CCWWGG	3 cut(s)	327, 532, 670
FaeI	CATG	6 cut(s)	319, 331, 580, 625, 649, 706
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	6 cut(s)	315, 327, 576, 621, 645, 702
Fnu4HI	GCNGC	3 cut(s)	378, 745, 748
FokI	GGATG	3 cut(s)	218, 419, 719
Fsp4HI	GCNGC	3 cut(s)	378, 745, 748
FspBI	CTAG	5 cut(s)	71, 198, 356, 381, 470
GluI	GCNGC	3 cut(s)	378, 745, 748
HaeIII	GGCC	1 cut(s)	441
Hin1II	CATG	6 cut(s)	319, 331, 580, 625, 649, 706
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	1 cut(s)	755
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	5 cut(s)	20, 188, 212, 655, 697
Hpy188I	TCNGA	1 cut(s)	760
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	5 cut(s)	20, 188, 212, 655, 697
HpyAV	CCTTC	2 cut(s)	467, 596
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4V	TGCA	5 cut(s)	20, 92, 233, 655, 750
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	2 cut(s)	215, 252
Hsp92II	CATG	6 cut(s)	319, 331, 580, 625, 649, 706
Kzo9I	GATC	3 cut(s)	111, 296, 570
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	3 cut(s)	364, 731, 734
LweI	GCATC	2 cut(s)	93, 385
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	5 cut(s)	71, 198, 356, 381, 470
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	113, 298, 572
MboI	GATC	3 cut(s)	111, 296, 570
MboII	GAAGA	1 cut(s)	653
MhlI	GDGCHC	2 cut(s)	22, 657
MluCI	AATT	5 cut(s)	12, 339, 350, 581, 801
MnlI	CCTC	5 cut(s)	221, 247, 325, 450, 615
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	4 cut(s)	122, 306, 566, 687
MslI	CAYNNNNRTG	2 cut(s)	650, 705
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	24, 81
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	2 cut(s)	24, 81
MwoI	GCNNNNNNNGC	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	3 cut(s)	111, 296, 570
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	6 cut(s)	319, 331, 580, 625, 649, 706
NlaIV	GGNNCC	2 cut(s)	85, 440
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	625
PaeI	GCATGC	1 cut(s)	625
PasI	CCCWGGG	1 cut(s)	80
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	3 cut(s)	379, 746, 749
PpuMI	RGGWCCY	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	22, 79
PspGI	CCWGG	2 cut(s)	22, 79
PspN4I	GGNNCC	2 cut(s)	85, 440
PspPI	GGNCC	2 cut(s)	84, 439
PspPPI	RGGWCCY	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	325, 530, 613
RsaNI	GTAC	3 cut(s)	324, 529, 612
RseI	CAYNNNNRTG	2 cut(s)	650, 705
SaqAI	TTAA	4 cut(s)	122, 306, 566, 687
SatI	GCNGC	3 cut(s)	378, 745, 748
Sau3AI	GATC	3 cut(s)	111, 296, 570
Sau96I	GGNCC	2 cut(s)	84, 439
ScrFI	CCNGG	2 cut(s)	24, 81
SduI	GDGCHC	2 cut(s)	22, 657
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	93, 385
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	650, 705
SpeI	ACTAGT	1 cut(s)	70
SphI	GCATGC	1 cut(s)	625
Sse9I	AATT	5 cut(s)	12, 339, 350, 581, 801
SspMI	CTAG	5 cut(s)	71, 198, 356, 381, 470
StyD4I	CCNGG	2 cut(s)	22, 79
StyI	CCWWGG	3 cut(s)	327, 532, 670
TaaI	ACNGT	1 cut(s)	694
TasI	AATT	5 cut(s)	12, 339, 350, 581, 801
TatI	WGTACW	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	4 cut(s)	122, 306, 566, 687
Tru9I	TTAA	4 cut(s)	122, 306, 566, 687
TscAI	CASTG	3 cut(s)	43, 596, 757
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	377, 744, 747
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	292, 361, 423, 653
TspRI	CASTG	3 cut(s)	43, 596, 757
VneI	GTGCAC	2 cut(s)	18, 653
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	2 cut(s)	339, 581
XceI	RCATGY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	5 cut(s)	71, 198, 356, 381, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.