Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421285.1

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1247

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1246 bp

atgaaagaggggttgagatctggcaagtttaaggttgagaaagaaaagggttctttgaagcaaacagtggtgggaaacaaaggggatgaggaaaccccacatttggttttggacggtgggcatggaccggaatttgatcatgtgcttcagactgggaatggtggtggtgttgttgacaggaaaaaggtgaatggtcaagtgccaattgttggcagggttctgcggtcacgggttgtggcgaatggtggtgttgaggtagtaggggagactgggaagaagaggaggttggtggctaatggggatgataagaacgggaaggaagaaaaggtgggaggtcaagtggggattgctggtagggttttgcggtcgcggactgtggtgaatggtggggagatggaggatgtgggagttgcggagaaaaggaagaggcagaggttggctaagaagggtgaaaatgttgttgatgatggttttgagaagaagaaggggaaggaagagggggatggtaaagtgctgaatgctggccgggttctgcggtcgcggactgtggtgaatggtgagtgtgataaggcggagagtggtggtgataaggcggagagtggtggtgttaaggcagagagtggtggtggtaaggcagagagtaatggtgatatggcggagagcggtggtgataaggcggagagcagtggtgataaggcagagagtgatggtggtaaggcagagagtaatggtgatatggcggagagcggtggtgataaggcggagagtgatggtggtatgacagagagtaatggtgatatggcggagagtggtggtgataagacagagagtcatattaataagtcagagagtgatggtgatagggcagagagtgatagtgatatgggtgagaaagaaaatgtggaagtagctgagtttgggaagaaaagtaggttggttggtaatggtggtggcgtggagaaaaagaaggtgaaggaaacagaggtgggtggtaaagcgccagttgctggtcgggttctgcggtcacggactgtggtgaatggtggatttatggcagagagtgatggtgctctggttagggaaagtagacagaaggatgtgtctcacaagaagttcagtgatgtgaaaaatgaaggacaggatcagttggttacagggtttacaaagaagttgaaaggtaagcgtgggagaccacccaaggtgagaaaagaagaaagtgggaggtcgggtgatggactcaggaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

415

Amino Acids

43.5

Weight (kDa)

8.87

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	209, 1007
AccBSI	CCGCTC	2 cut(s)	663, 747
AccI	GTMKAC	1 cut(s)	1087
AccII	CGCG	2 cut(s)	370, 541
AclWI	GGATC	1 cut(s)	1149
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	103, 209, 1007
AgsI	TTSAA	2 cut(s)	58, 1174
AhdI	GACNNNNNGTC	1 cut(s)	828
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 917, 949
AluBI	AGCT	1 cut(s)	911
AluI	AGCT	1 cut(s)	911
Alw21I	GWGCWC	1 cut(s)	1072
Alw26I	GTCTC	3 cut(s)	260, 1107, 1183
AlwI	GGATC	1 cut(s)	1149
AlwNI	CAGNNNCTG	1 cut(s)	1007
AoxI	GGCC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	131
AseI	ATTAAT	1 cut(s)	837
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	1072
BccI	CCATC	8 cut(s)	388, 461, 497, 701, 764, 848, 1058, 1226
BclI	TGATCA	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	3 cut(s)	260, 1107, 1183
BfoI	RGCGCY	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	828
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	527
BmrI	ACTGGG	2 cut(s)	162, 279
BmuI	ACTGGG	2 cut(s)	162, 279
BpuMI	CCSGG	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	1183
BsaJI	CCNNGG	1 cut(s)	1197
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 1213, 1243
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 209, 1007
Bse1I	ACTGG	3 cut(s)	157, 274, 1001
BseDI	CCNNGG	1 cut(s)	1197
BseGI	GGATG	5 cut(s)	91, 307, 406, 508, 1102
BseLI	CCNNNNNNNGG	3 cut(s)	103, 209, 1007
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	3 cut(s)	157, 274, 1001
BseRI	GAGGAG	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	370, 541
Bsh1285I	CGRYCG	2 cut(s)	368, 539
BshFI	GGCC	1 cut(s)	525
BsiEI	CGRYCG	2 cut(s)	368, 539
BsiHKAI	GWGCWC	1 cut(s)	1072
BsiSI	CCGG	2 cut(s)	128, 526
BslI	CCNNNNNNNGG	3 cut(s)	103, 209, 1007
BsmAI	GTCTC	3 cut(s)	260, 1107, 1183
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	1183
Bsp1286I	GDGCHC	1 cut(s)	1072
Bsp143I	GATC	3 cut(s)	17, 136, 1141
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	1 cut(s)	904
BspFNI	CGCG	2 cut(s)	370, 541
BspPI	GGATC	1 cut(s)	1149
BspTNI	GGTCTC	1 cut(s)	1183
BsrBI	CCGCTC	2 cut(s)	663, 747
BsrI	ACTGG	3 cut(s)	157, 274, 1001
BssECI	CCNNGG	1 cut(s)	1197
BssMI	GATC	3 cut(s)	17, 136, 1141
BssT1I	CCWWGG	1 cut(s)	1197
Bst4CI	ACNGT	5 cut(s)	67, 116, 376, 547, 1033
Bst6I	CTCTTC	3 cut(s)	272, 419, 489
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	3 cut(s)	441, 912, 1238
BstF5I	GGATG	5 cut(s)	91, 307, 406, 508, 1102
BstFNI	CGCG	2 cut(s)	370, 541
BstH2I	RGCGCY	1 cut(s)	1001
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	3 cut(s)	20, 139, 1144
BstMAI	GTCTC	3 cut(s)	260, 1107, 1183
BstMBI	GATC	3 cut(s)	17, 136, 1141
BstMCI	CGRYCG	2 cut(s)	368, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	1004
BstSCI	CCNGG	1 cut(s)	525
BstUI	CGCG	2 cut(s)	370, 541
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	525
BtsCI	GGATG	5 cut(s)	91, 307, 406, 508, 1102
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	72, 691, 1123
Cac8I	GCNNGC	1 cut(s)	523
CaiI	CAGNNNCTG	1 cut(s)	1007
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	2 cut(s)	122, 140
CviJI	RGCY	4 cut(s)	293, 440, 525, 911
CviKI_1	RGCY	4 cut(s)	293, 440, 525, 911
DdeI	CTNAG	3 cut(s)	441, 912, 1238
DpnI	GATC	3 cut(s)	19, 138, 1143
DpnII	GATC	3 cut(s)	17, 136, 1141
DriI	GACNNNNNGTC	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	3 cut(s)	272, 419, 489
Eam1105I	GACNNNNNGTC	1 cut(s)	828
EarI	CTCTTC	3 cut(s)	272, 419, 489
EciI	GGCGGA	7 cut(s)	587, 608, 671, 692, 755, 776, 818
Eco130I	CCWWGG	1 cut(s)	1197
Eco31I	GGTCTC	1 cut(s)	1183
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	1197
ErhI	CCWWGG	1 cut(s)	1197
FaeI	CATG	2 cut(s)	125, 143
FaiI	YATR	9 cut(s)	123, 141, 653, 737, 779, 800, 834, 884, 1052
FatI	CATG	2 cut(s)	121, 139
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	1087
FokI	GGATG	5 cut(s)	98, 314, 413, 515, 1109
GlaI	GCGC	1 cut(s)	999
HaeII	RGCGCY	1 cut(s)	1001
HaeIII	GGCC	1 cut(s)	525
HapII	CCGG	2 cut(s)	128, 526
HhaI	GCGC	1 cut(s)	1000
Hin1II	CATG	2 cut(s)	125, 143
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	829, 1236
HpaII	CCGG	2 cut(s)	128, 526
Hpy166II	GTNNAC	3 cut(s)	175, 1088, 1161
Hpy188I	TCNGA	2 cut(s)	150, 847
Hpy188III	TCNNGA	1 cut(s)	1240
Hpy8I	GTNNAC	3 cut(s)	175, 1088, 1161
HpyAV	CCTTC	8 cut(s)	310, 439, 478, 484, 961, 967, 1087, 1127
HpyCH4III	ACNGT	5 cut(s)	67, 116, 376, 547, 1033
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1004
HpyF3I	CTNAG	3 cut(s)	441, 912, 1238
Hsp92II	CATG	2 cut(s)	125, 143
HspAI	GCGC	1 cut(s)	998
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	17, 136, 1141
MaeIII	GTNAC	3 cut(s)	225, 1023, 1150
MalI	GATC	3 cut(s)	19, 138, 1143
MbiI	CCGCTC	2 cut(s)	663, 747
MboI	GATC	3 cut(s)	17, 136, 1141
MboII	GAAGA	9 cut(s)	286, 289, 332, 436, 490, 493, 506, 934, 1223
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	1072
MluCI	AATT	2 cut(s)	131, 204
MlyI	GAGTC	2 cut(s)	838, 1230
MseI	TTAA	3 cut(s)	30, 609, 837
MspI	CCGG	2 cut(s)	128, 526
MspR9I	CCNGG	1 cut(s)	527
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	523
MvnI	CGCG	2 cut(s)	370, 541
MwoI	GCNNNNNNNGC	1 cut(s)	1004
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	3 cut(s)	17, 136, 1141
NlaIII	CATG	2 cut(s)	125, 143
NmuCI	GTSAC	2 cut(s)	225, 1023
PctI	GAATGC	1 cut(s)	523
PflMI	CCANNNNNTGG	2 cut(s)	209, 1007
PleI	GAGTC	2 cut(s)	837, 1230
PpsI	GAGTC	2 cut(s)	837, 1230
PshBI	ATTAAT	1 cut(s)	837
PspPI	GGNCC	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	30, 609, 837
Sau3AI	GATC	3 cut(s)	17, 136, 1141
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	2 cut(s)	838, 1230
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	1072
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	2 cut(s)	131, 204
StyD4I	CCNGG	1 cut(s)	525
StyI	CCWWGG	1 cut(s)	1197
TaaI	ACNGT	5 cut(s)	67, 116, 376, 547, 1033
TasI	AATT	2 cut(s)	131, 204
Tru1I	TTAA	3 cut(s)	30, 609, 837
Tru9I	TTAA	3 cut(s)	30, 609, 837
TscAI	CASTG	3 cut(s)	72, 691, 1123
TseFI	GTSAC	2 cut(s)	225, 1023
Tsp45I	GTSAC	2 cut(s)	225, 1023
TspDTI	ATGAA	2 cut(s)	17, 1146
TspGWI	ACGGA	1 cut(s)	1042
TspRI	CASTG	3 cut(s)	72, 691, 1123
Van91I	CCANNNNNTGG	2 cut(s)	209, 1007
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.