Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Reverse (-)

27964606 .. 27971335

Gene Structure 6730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4290 bp

ATGGAGGTGGATGGTAAAGTGCAAGTTGTTGGTCGAGTTCTGTGGTCACAGTCAGCGGTGAATGGAGGGTGTGATAAGGTTGTGAGTGATAGTGTTCTGGATGCCGATAGTAGAGAAAGTGATGGGTCTGACAAGCAATGTAATGAGGTAAAAGATGAAGGGGTTGATCTGTTGGGCCAGAGTGAAAATGTGGGAGTAGGTGAGACTGGGAAGAAAAGGAGGCGGGTTGATAATGGTGAAGAAATTGATAATGATGCTCTTGAGAAGAAAAAGGTCAAGGAAGATGTGCTAACTACAGTTAGGATTCTGCGGTCACGAGTTGTGGTGAATGGGGTGTGTGATAAGGCAGGGAGTGATGGGTCTCGCAAGAAATCTTCCAAGGTTAAAAACGAAGGGGGTGATCAGTTGGTTGAACGTTTTGCAAAGAAGTTGGAAGGAAAGAGAGGGGGCCTACTCAAGGTGGAAAAGGAAGAAAGTGATGGTTCGGGTGCCATGCTACAGAAACGTAAGCGCGGGAGACCTAAGAAGGTACAAACGGAAGAGAGTGATCTGTCGGTTGGTCCGTTGAGAAAGAAGTCAAAATTGGAGCACAAGAGACCACTTAAGGTGCAAAAGACTAATGTGGGTTTGAAAGGAAAGCTTGCTAAGGAAGGCAATATGGTTTTGAGATCACGAGAAAGAATTAAAGTGAATATGACAACTAACGGTTCATATCTGGTAAGGAGGAATATTGGGAAAGAGTTTGATGTGAAGGCCTTTTCTCCAGCTAAAAGGGATAAAAAAGGAAATGATTTGGAGAATGAGGACAGTGAGGATGGAGAAGGAAATAATGAATGGAAACAGAAACAGAAGGGAAATAAAGAACGGAAAAAAAAGCAGAAGGGTCAGGATCGAGATTGCGCCAGAAGTAAGCAAAAACAGTTAGTGAGAGATAAAATGGTCGATCTAATTATGCGTGCAGGTTGGACCATTCAATATAGGCCTAGGAATGGCAGAGATTACAAGGATGCAGTGTATGTAACTCCAGCAGGACAGACTCACTGGTCAGTCACCAAGGCTTACACAACCCTAAAAATGAATTGTGAAAATGGTGAAAATAATTCCGAATTTTGTAAGCCTAGCTTCAAATTTACTCCGATACCACCGGAGGAAATTGACATGTTAGCAAGGATACAAATTGTGAAAAGGGTGGGGAAAAAGAAAGGGAAGAAGGGGAAAAATGGAATGGAGGGCGGGATTAGTGAAAAGCAAAAGAAGAAAAAGGCCGGGAATGCAGTGGATGGAGTTATTGGAGAGAAAAAGAAAAAGAAATTGGGTAGGCCATTCAAAGGGAAACGTTTACTTATTGAGAAGGATGATTCAGCACGTGCAGCGTGCAAGGGAAGGCGAAGTTTACATAAGACAAAAAATAGAAAGCGATGTGGTCTGTTGGTTCGGAACTCTGAGAATGCAGATTCAGATAATGATGGCCATGTACCATATGACGGGAAAAGAACAGTACTTGCCTGGATGATTGATTTGGGAACCCTATCACTTAATTCGAAGGTGAAGTACATGAACAAGAGAAAGACACAGGTGCTTCTTGAGGGTAACATTACAAGAGATGGAATTCATTGTGGTTGCTGTGGAGAAACAATCCCATTTTCGAAGTTTGTAACCCACGCCAAAAGTGATTACTCTGAGCCGTTTAAACATATATATGTAGACTCAGGGTCTACACTTTTGCAATGCCTACTTGACTCATGGAATAAACAGGATGAAAATGAACGTCGGGGATTTCATTTCGTGGGTGTTAACAGGGAAGACCCAAACGATGATACGTGTGGAATCTGTGGAGATGGTGGGTACTTGATTTGTTGTGATGGCTGTCCATCAACATTCCACCAAAATTGTTTAGAGATAAAGAAGTTCCCCTCAGGTGATTGGCATTGTGTATATTGTTCATGCAAATTTTGTGGGAAGTTTGGCGGTAATATATGCGAAAGTAATGGCATTGACACTGACACTGACAATTTAGCAGCGTCAGCATTAGTTACCTGCCATGTGTGTGAGGAAAAATTTCACCAATCCTGTATTCAGGCAAAGGATGCTGTAAATGATGATTTTAATGGTCCATCCTTCTGTGGGAAGAATTGTCAAGAGCTATTTGCGAGTCTTCAGATGCTTCTTGGAGTGAGGCAAGAAATTGAAGAAGGATTTTCATTGACTCTGATTCGCCGATCTGATATCAGCTCAATTTCTATTTGTGACACACCGCAGACGGATGATTGTGATTCAAAGCTAATTGAATGCAACTCCAAGCTGGCTGTTGCATTTTTATTAATGGACGAGTGTTTTTTGCCTATGGTTGACCACAGAAGTGGAGTCAATTTGATTCATAATATTCTGTATAATCGTGGGTCAAATTTTAGCAGACTGAATTATAGTGGTTTCTTAACTGCAATTCTAGAGAGAGGTGATGAGATCATTTCAGCAGCATCCATCCGGATTCATGGGAACTATTTAGCAGAGATGCCATTTATTGGGACCCGCTATATGTATAGGCGTCAAGGAATGTGCCGTCGGCTTCTAACTGGAATCGAATCTGCTCTCAGCTCATTGAATGTTGAAAGATTGGTTATACCTGCGATCTTGGAACTCAGAGAAACATGGACTTCTGTTTTTGGTTTTAAGCCCCTTGAAGGATCAAGCAAGCGGAGGATGAAAAACATGAATGTATTGGTTTTCCCTGGTGTAGATATATTAGAGAAGCCATTGTCGAAGTACTTACCAGAAGCAAATATGATTCTTGCTGAAGGTGTGAGGTCCACCGAACTTGAGGATCAGCAACTCAAGCAAGACGTTTTATGTGATACTAATGACAAATGTTTGGCTGCGTCTGGAAGTGAAGCATCAGCACCCTGTGGAAACGAGGCAACTGATGAACTTGCTGATTTTGAATCCAATACACAGCATATCTGTGGTGTTTCTCAGGATAATCTGGAGGAGAAAAGCATTCCTCCTCAATCAACTTGTGACGTTCATGAACAAACTGAGGACGTTAATGAATATCAGAGTTCTGCTTCAGTTCCTGATGTAGCCACAGTGGAAGTGGAGACCCAACAAGGCCAGCATATCATGCCTGAAGTCGAAAGCAAATCTTTGACGTCACATCGTAGTGATTCTGATGCCACTGACTCTTGTGTAATGATTCTTTCTGCTTCCAGGGAGGTCACTGAAAAAGTTGATTGTGAGGTCAGAATAGAAGATGACACGTTTGAGAATCACGATGCTCATGACGAAGGATCTATTTGCCGCTCTACTGAAAATGCCACTGAGCTGCAGAGCATGGTACATGAAGCAAAAGTTCCTGATGAAACTACTGTCTGCCATGATTCAGAAACTACAACTCGGGCATCTCAAGAGGCAAGCGACCTTAAGCATCAGGATTCTCAAAATTTGCAGGTTTCAGGATCTATTTCCTGCTCAGATGGAAAGATGCCTGAAACTTGTGCACCGGAATATAACCATACTGGTGCTCAGCATACACCTGCAGTGATTGTTGAGGTGCATCCAGAATCTATCGAGTGTTATGGCTCTGAAATTCTGACTGAACCTAGCAAGGTTGCCAGAGATGTACTAAACCCGACTCCCCTGTTGTCTCACCAGAAAGCAGATGAGTTTGAAGGCAATGGGCTCAACACTCATAAAGTTGCACATGGGTTTGAAGGCAATGGGATCGACACTTATAAAGTTGAATCTGCTCCAGCTGACAGAGATTCTCATCTTACATGTGGACATGCCAACTCCCTGGAGGTTACTGATTTGAACTTAACCCCGGAAGAGTCTCAGAACACAATATCCGTAAAGCAATCAGAACTCAATTCTCAGGTTGATAATACAAGTCCCACACAGTGCAACTCGAGCAATACCCCTGCTGTGGCTCTTCACTGCGCATCCGTTGGGGGTACTTCAGAGGCGGTTATTCTATCAAACCAGTTTTTTTTCCGGGGAATGATTCGTGCATGCTATTTTTTTCGCCTTCCGCACGCCTCTATTTTTCTAGCCGCTGGATTGAACAAATCAATGGAAAATCAATGGCCCGATTTAAGAAGAGTGCAGAAGTTGGAAAGGGTGTGCGTAAATCACTCCCATTTTTGGGGTCGCAAAGTACAGAAGTTAGAATTACCAGACTATAGCATTTTATGGCTTTCGTGGGTTCGCATAAGTTTTGGCCTCCTGGTGCTCATTGTATTATCAAACGATTCATTTGCTTCAACTATGAAAAAAAAGCCTATCATTTTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

1430

Amino Acids

158.86

Weight (kDa)

6.63

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3729
AarI	CACCTGC	1 cut(s)	3538
AasI	GACNNNNNNGTC	1 cut(s)	1042
AatII	GACGTC	1 cut(s)	3149
Acc16I	TGCGCA	1 cut(s)	3934
Acc36I	ACCTGC	5 cut(s)	950, 2045, 2632, 3433, 3538
AccB1I	GGYRCC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	2522
AccBSI	CCGCTC	1 cut(s)	3297
AccI	GTMKAC	2 cut(s)	1704, 1715
AccII	CGCG	1 cut(s)	513
AccIII	TCCGGA	1 cut(s)	2484
AclI	AACGTT	2 cut(s)	415, 1336
AclWI	GGATC	6 cut(s)	897, 2692, 2829, 3292, 3460, 3725
AcoI	YGGCCR	1 cut(s)	1468
AcsI	RAATTY	8 cut(s)	1106, 1127, 1608, 1949, 2057, 2404, 3436, 3582
AcuI	CTGAAG	5 cut(s)	2141, 2814, 3048, 3144, 3936
AcvI	CACGTG	1 cut(s)	1367
AcyI	GRCGYC	2 cut(s)	2545, 3146
AdeI	CACNNNGTG	2 cut(s)	2903, 3894
AflII	CTTAAG	2 cut(s)	602, 3416
AflIII	ACRYGT	4 cut(s)	1158, 1820, 3252, 3770
AhdI	GACNNNNNGTC	1 cut(s)	1711
AjnI	CCWGG	5 cut(s)	1505, 2728, 3203, 3789, 4218
AjuI	GAANNNNNNNTTGG	6 cut(s)	566, 598, 1295, 1327, 2058, 2090
AleI	CACNNNNGTG	1 cut(s)	2358
AloI	GAACNNNNNNTCC	2 cut(s)	3824, 3856
Alw21I	GWGCWC	4 cut(s)	591, 3496, 3520, 4227
Alw26I	GTCTC	7 cut(s)	197, 366, 511, 589, 3089, 3645, 3831
Alw44I	GTGCAC	1 cut(s)	3492
AlwI	GGATC	6 cut(s)	897, 2692, 2829, 3292, 3460, 3725
AlwNI	CAGNNNCTG	1 cut(s)	3071
Ama87I	CYCGRG	2 cut(s)	3390, 3901
Aor13HI	TCCGGA	1 cut(s)	2484
ApaLI	GTGCAC	1 cut(s)	3492
ApeKI	GCWGC	5 cut(s)	1370, 2018, 2474, 2873, 3319
ApoI	RAATTY	8 cut(s)	1106, 1127, 1608, 1949, 2057, 2404, 3436, 3582
AseI	ATTAAT	1 cut(s)	2321
Asp700I	GAANNNNTTC	1 cut(s)	2058
AspA2I	CCTAGG	1 cut(s)	983
AspLEI	GCGC	3 cut(s)	513, 902, 3935
AspS9I	GGNCC	8 cut(s)	175, 448, 560, 966, 2111, 2526, 2805, 4080
AsuC2I	CCSGG	3 cut(s)	1267, 3818, 3989
AsuII	TTCGAA	2 cut(s)	1541, 1646
AvaI	CYCGRG	2 cut(s)	3390, 3901
AvaII	GGWCC	5 cut(s)	560, 966, 2111, 2526, 2805
AvrII	CCTAGG	1 cut(s)	983
AxyI	CCTNAGG	1 cut(s)	1915
BaeGI	GKGCMC	1 cut(s)	3496
BalI	TGGCCA	1 cut(s)	1470
BanI	GGYRCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	3678
BarI	GAAGNNNNNNTAC	2 cut(s)	1535, 1567
BauI	CACGAG	2 cut(s)	315, 672
BbrPI	CACGTG	1 cut(s)	1367
BbsI	GAAGAC	2 cut(s)	1809, 2147
Bbv12I	GWGCWC	4 cut(s)	591, 3496, 3520, 4227
BbvI	GCAGC	5 cut(s)	1382, 2030, 2486, 2860, 3306
BceAI	ACGGC	2 cut(s)	1669, 2544
BcgI	CGANNNNNNTGC	4 cut(s)	3700, 3734, 4232, 4266
BciT130I	CCWGG	5 cut(s)	1507, 2730, 3205, 3791, 4220
BciVI	GTATCC	1 cut(s)	1164
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	3 cut(s)	1267, 3818, 3989
BcoDI	GTCTC	7 cut(s)	197, 366, 511, 589, 3089, 3645, 3831
BfaI	CTAG	5 cut(s)	984, 1119, 2447, 3597, 4043
BfmI	CTRYAG	5 cut(s)	294, 497, 3320, 3531, 4174
BfrI	CTTAAG	2 cut(s)	602, 3416
BfuAI	ACCTGC	5 cut(s)	950, 2045, 2632, 3433, 3538
BfuI	GTATCC	1 cut(s)	1164
BisI	GCNGC	7 cut(s)	1371, 2019, 2475, 2874, 3295, 3320, 4047
BlnI	CCTAGG	1 cut(s)	983
BlpI	GCTNAGC	1 cut(s)	3519
BlsI	GCNGC	7 cut(s)	1372, 2020, 2476, 2875, 3296, 3321, 4048
BmcAI	AGTACT	2 cut(s)	1500, 2765
Bme1390I	CCNGG	8 cut(s)	1267, 1507, 2730, 3205, 3791, 3818, 3989, 4220
Bme18I	GGWCC	5 cut(s)	560, 966, 2111, 2526, 2805
BmeRI	GACNNNNNGTC	1 cut(s)	1711
BmeT110I	CYCGRG	2 cut(s)	3390, 3901
BmgT120I	GGNCC	8 cut(s)	175, 448, 560, 966, 2111, 2526, 2805, 4080
BmiI	GGNNCC	5 cut(s)	449, 490, 1525, 2527, 2528
BmrFI	CCNGG	8 cut(s)	1267, 1507, 2730, 3205, 3791, 3818, 3989, 4220
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	2 cut(s)	1809, 2147
BpmI	CTGGAG	5 cut(s)	747, 1008, 3002, 3729, 3812
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	3519
Bpu14I	TTCGAA	2 cut(s)	1541, 1646
BpuEI	CTTGAG	6 cut(s)	281, 440, 1604, 2816, 2837, 3384
BpuMI	CCSGG	3 cut(s)	1267, 3818, 3989
BsaAI	YACGTR	2 cut(s)	1367, 1821
BsaBI	GATNNNNATC	1 cut(s)	3762
BsaHI	GRCGYC	2 cut(s)	2545, 3146
BsaI	GGTCTC	4 cut(s)	366, 511, 589, 3089
BsaJI	CCNNGG	8 cut(s)	378, 983, 1053, 2728, 3204, 3789, 3816, 3988
BsaWI	WCCGGW	3 cut(s)	1144, 2484, 3496
Bse1I	ACTGG	5 cut(s)	211, 1046, 2578, 3517, 3976
Bse21I	CCTNAGG	1 cut(s)	1915
Bse3DI	GCAATG	4 cut(s)	143, 1733, 3676, 3718
Bse8I	GATNNNNATC	1 cut(s)	3762
BseAI	TCCGGA	1 cut(s)	2484
BseBI	CCWGG	5 cut(s)	1507, 2730, 3205, 3791, 4220
BseDI	CCNNGG	8 cut(s)	378, 983, 1053, 2728, 3204, 3789, 3816, 3988
BseJI	GATNNNNATC	1 cut(s)	3762
BseMI	GCAATG	4 cut(s)	143, 1733, 3676, 3718
BseNI	ACTGG	5 cut(s)	211, 1046, 2578, 3517, 3976
BseRI	GAGGAG	2 cut(s)	2991, 2999
BseSI	GKGCMC	1 cut(s)	3496
BseXI	GCAGC	5 cut(s)	1382, 2030, 2486, 2860, 3306
BsgI	GTGCAG	3 cut(s)	978, 1389, 4118
Bsh1236I	CGCG	1 cut(s)	513
BshNI	GGYRCC	1 cut(s)	488
BsiHKAI	GWGCWC	4 cut(s)	591, 3496, 3520, 4227
BsiHKCI	CYCGRG	2 cut(s)	3390, 3901
BsiSI	CCGG	6 cut(s)	1145, 1266, 2485, 3497, 3818, 3988
BslFI	GGGAC	2 cut(s)	2539, 3870
BsmAI	GTCTC	7 cut(s)	197, 366, 511, 589, 3089, 3645, 3831
BsmFI	GGGAC	2 cut(s)	2539, 3870
BsmI	GAATGC	4 cut(s)	1276, 1453, 2294, 2994
Bso31I	GGTCTC	4 cut(s)	366, 511, 589, 3089
BsoBI	CYCGRG	2 cut(s)	3390, 3901
Bsp119I	TTCGAA	2 cut(s)	1541, 1646
Bsp1286I	GDGCHC	5 cut(s)	591, 3496, 3520, 3678, 4227
Bsp13I	TCCGGA	1 cut(s)	2484
Bsp1720I	GCTNAGC	1 cut(s)	3519
BspEI	TCCGGA	1 cut(s)	2484
BspFNI	CGCG	1 cut(s)	513
BspHI	TCATGA	2 cut(s)	3022, 3274
BspLI	GGNNCC	5 cut(s)	449, 490, 1525, 2527, 2528
BspMAI	CTGCAG	2 cut(s)	3324, 3535
BspMI	ACCTGC	5 cut(s)	950, 2045, 2632, 3433, 3538
BspPI	GGATC	6 cut(s)	897, 2692, 2829, 3292, 3460, 3725
BspQI	GCTCTTC	1 cut(s)	3930
BspT104I	TTCGAA	2 cut(s)	1541, 1646
BspT107I	GGYRCC	1 cut(s)	488
BspTI	CTTAAG	2 cut(s)	602, 3416
BspTNI	GGTCTC	4 cut(s)	366, 511, 589, 3089
BsrBI	CCGCTC	1 cut(s)	3297
BsrDI	GCAATG	4 cut(s)	143, 1733, 3676, 3718
BsrI	ACTGG	5 cut(s)	211, 1046, 2578, 3517, 3976
BssECI	CCNNGG	8 cut(s)	378, 983, 1053, 2728, 3204, 3789, 3816, 3988
BssNI	GRCGYC	2 cut(s)	2545, 3146
BssSI	CACGAG	2 cut(s)	315, 672
BssT1I	CCWWGG	3 cut(s)	378, 983, 1053
Bst2BI	CACGAG	2 cut(s)	315, 672
Bst2UI	CCWGG	5 cut(s)	1507, 2730, 3205, 3791, 4220
Bst4CI	ACNGT	9 cut(s)	51, 298, 707, 809, 921, 1498, 3085, 3364, 3894
Bst6I	CTCTTC	4 cut(s)	534, 3816, 3930, 4087
BstACI	GRCGYC	2 cut(s)	2545, 3146
BstAFI	CTTAAG	2 cut(s)	602, 3416
BstAPI	GCANNNNNTGC	2 cut(s)	2087, 3118
BstBAI	YACGTR	2 cut(s)	1367, 1821
BstBI	TTCGAA	2 cut(s)	1541, 1646
BstC8I	GCNNGC	9 cut(s)	642, 957, 1375, 2304, 2693, 3110, 3409, 4006, 4029
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	513
BstHHI	GCGC	3 cut(s)	513, 902, 3935
BstMAI	GTCTC	7 cut(s)	197, 366, 511, 589, 3089, 3645, 3831
BstMWI	GCNNNNNNNGC	7 cut(s)	1271, 1370, 2024, 2087, 2833, 3118, 3903
BstNI	CCWGG	5 cut(s)	1507, 2730, 3205, 3791, 4220
BstNSI	RCATGY	4 cut(s)	1162, 3774, 3782, 4008
BstSCI	CCNGG	8 cut(s)	1265, 1505, 2728, 3203, 3789, 3816, 3987, 4218
BstSFI	CTRYAG	5 cut(s)	294, 497, 3320, 3531, 4174
BstSLI	GKGCMC	1 cut(s)	3496
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	5 cut(s)	1382, 2030, 2486, 2860, 3306
BstV2I	GAAGAC	2 cut(s)	1809, 2147
BstX2I	RGATCY	2 cut(s)	3284, 3452
BstXI	CCANNNNNNTGG	2 cut(s)	2360, 3790
BstYI	RGATCY	2 cut(s)	3284, 3452
Bsu36I	CCTNAGG	1 cut(s)	1915
BsuI	GTATCC	1 cut(s)	1164
BtgZI	GCGATG	1 cut(s)	1432
BtsI	GCAGTG	4 cut(s)	1017, 1281, 3540, 3928
BveI	ACCTGC	5 cut(s)	950, 2045, 2632, 3433, 3538
Cac8I	GCNNGC	9 cut(s)	642, 957, 1375, 2304, 2693, 3110, 3409, 4006, 4029
CaiI	CAGNNNCTG	1 cut(s)	3071
CciI	TCATGA	2 cut(s)	3022, 3274
CfoI	GCGC	3 cut(s)	513, 902, 3935
Cfr13I	GGNCC	8 cut(s)	175, 448, 560, 966, 2111, 2526, 2805, 4080
CseI	GACGC	3 cut(s)	2010, 2534, 2865
CspCI	CAANNNNNGTGG	6 cut(s)	1871, 1906, 1936, 1971, 2797, 2832
DraI	TTTAAA	1 cut(s)	1690
DraIII	CACNNNGTG	2 cut(s)	2903, 3894
DrdI	GACNNNNNNGTC	1 cut(s)	1042
DriI	GACNNNNNGTC	1 cut(s)	1711
DseDI	GACNNNNNNGTC	1 cut(s)	1042
EaeI	YGGCCR	1 cut(s)	1468
Eam1104I	CTCTTC	4 cut(s)	534, 3816, 3930, 4087
Eam1105I	GACNNNNNGTC	1 cut(s)	1711
EarI	CTCTTC	4 cut(s)	534, 3816, 3930, 4087
Eco130I	CCWWGG	3 cut(s)	378, 983, 1053
Eco147I	AGGCCT	2 cut(s)	755, 982
Eco24I	GRGCYC	1 cut(s)	3678
Eco31I	GGTCTC	4 cut(s)	366, 511, 589, 3089
Eco32I	GATATC	1 cut(s)	2227
Eco47I	GGWCC	5 cut(s)	560, 966, 2111, 2526, 2805
Eco57I	CTGAAG	5 cut(s)	2141, 2814, 3048, 3144, 3936
Eco72I	CACGTG	1 cut(s)	1367
Eco81I	CCTNAGG	1 cut(s)	1915
Eco88I	CYCGRG	2 cut(s)	3390, 3901
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	2 cut(s)	448, 2526
EcoRI	GAATTC	1 cut(s)	1608
EcoRII	CCWGG	5 cut(s)	1505, 2728, 3203, 3789, 4218
EcoRV	GATATC	1 cut(s)	2227
EcoT14I	CCWWGG	3 cut(s)	378, 983, 1053
EcoT38I	GRGCYC	1 cut(s)	3678
ErhI	CCWWGG	3 cut(s)	378, 983, 1053
FalI	AAGNNNNNCTT	6 cut(s)	624, 656, 1106, 1138, 3124, 3156
FaqI	GGGAC	2 cut(s)	2539, 3870
FauI	CCCGC	4 cut(s)	216, 506, 1226, 2537
FauNDI	CATATG	1 cut(s)	1480
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	2 cut(s)	1704, 1715
Fnu4HI	GCNGC	7 cut(s)	1371, 2019, 2475, 2874, 3295, 3320, 4047
FriOI	GRGCYC	1 cut(s)	3678
Fsp4HI	GCNGC	7 cut(s)	1371, 2019, 2475, 2874, 3295, 3320, 4047
FspBI	CTAG	5 cut(s)	984, 1119, 2447, 3597, 4043
FspI	TGCGCA	1 cut(s)	3934
GlaI	GCGC	3 cut(s)	512, 901, 3934
GluI	GCNGC	7 cut(s)	1371, 2019, 2475, 2874, 3295, 3320, 4047
GsuI	CTGGAG	5 cut(s)	747, 1008, 3002, 3729, 3812
HapII	CCGG	6 cut(s)	1145, 1266, 2485, 3497, 3818, 3988
HgaI	GACGC	3 cut(s)	2010, 2534, 2865
HhaI	GCGC	3 cut(s)	513, 902, 3935
Hin1I	GRCGYC	2 cut(s)	2545, 3146
Hin6I	GCGC	3 cut(s)	511, 900, 3933
HinP1I	GCGC	3 cut(s)	511, 900, 3933
HincII	GTYRAC	2 cut(s)	1795, 2350
HindII	GTYRAC	2 cut(s)	1795, 2350
HindIII	AAGCTT	1 cut(s)	638
HpaI	GTTAAC	1 cut(s)	1795
HpaII	CCGG	6 cut(s)	1145, 1266, 2485, 3497, 3818, 3988
Hpy166II	GTNNAC	9 cut(s)	1340, 1394, 1705, 1716, 1795, 2350, 2808, 3494, 3776
Hpy8I	GTNNAC	9 cut(s)	1340, 1394, 1705, 1716, 1795, 2350, 2808, 3494, 3776
Hpy99I	CGWCG	2 cut(s)	1773, 2565
HpyCH4III	ACNGT	9 cut(s)	51, 298, 707, 809, 921, 1498, 3085, 3364, 3894
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1271, 1370, 2024, 2087, 2833, 3118, 3903
Hsp92I	GRCGYC	2 cut(s)	2545, 3146
HspAI	GCGC	3 cut(s)	511, 900, 3933
KflI	GGGWCCC	1 cut(s)	2526
Kpn2I	TCCGGA	1 cut(s)	2484
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	1795
LguI	GCTCTTC	1 cut(s)	3930
LmnI	GCTCC	2 cut(s)	586, 3748
Lsp1109I	GCAGC	5 cut(s)	1382, 2030, 2486, 2860, 3306
MaeI	CTAG	5 cut(s)	984, 1119, 2447, 3597, 4043
MbiI	CCGCTC	1 cut(s)	3297
MflI	RGATCY	2 cut(s)	3284, 3452
MhlI	GDGCHC	5 cut(s)	591, 3496, 3520, 3678, 4227
MlsI	TGGCCA	1 cut(s)	1470
MluNI	TGGCCA	1 cut(s)	1470
MlyI	GAGTC	9 cut(s)	1030, 1700, 1733, 2161, 2200, 2373, 3170, 3622, 3833
MmeI	TCCRAC	3 cut(s)	411, 944, 4086
Mox20I	TGGCCA	1 cut(s)	1470
MroI	TCCGGA	1 cut(s)	2484
MroXI	GAANNNNTTC	1 cut(s)	2058
MscI	TGGCCA	1 cut(s)	1470
MslI	CAYNNNNRTG	6 cut(s)	1698, 2046, 2358, 2958, 3156, 3513
Msp20I	TGGCCA	1 cut(s)	1470
MspA1I	CMGCKG	3 cut(s)	56, 3749, 4049
MspCI	CTTAAG	2 cut(s)	602, 3416
MspI	CCGG	6 cut(s)	1145, 1266, 2485, 3497, 3818, 3988
MspR9I	CCNGG	8 cut(s)	1267, 1507, 2730, 3205, 3791, 3818, 3989, 4220
MssI	GTTTAAAC	1 cut(s)	1690
Mva1269I	GAATGC	4 cut(s)	1276, 1453, 2294, 2994
MvaI	CCWGG	5 cut(s)	1507, 2730, 3205, 3791, 4220
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	7 cut(s)	1271, 1370, 2024, 2087, 2833, 3118, 3903
NciI	CCSGG	3 cut(s)	1267, 3818, 3989
NdeI	CATATG	1 cut(s)	1480
NlaIV	GGNNCC	5 cut(s)	449, 490, 1525, 2527, 2528
NmuCI	GTSAC	7 cut(s)	45, 312, 1048, 2246, 3014, 3147, 3211
NsbI	TGCGCA	1 cut(s)	3934
NspI	RCATGY	4 cut(s)	1162, 3774, 3782, 4008
NspV	TTCGAA	2 cut(s)	1541, 1646
OliI	CACNNNNGTG	1 cut(s)	2358
PaeI	GCATGC	1 cut(s)	4008
PaeR7I	CTCGAG	1 cut(s)	3901
PagI	TCATGA	2 cut(s)	3022, 3274
PaqCI	CACCTGC	1 cut(s)	3538
PceI	AGGCCT	2 cut(s)	755, 982
PciI	ACATGT	2 cut(s)	1158, 3770
PciSI	GCTCTTC	1 cut(s)	3930
PcsI	WCGNNNNNNNCGW	1 cut(s)	560
PctI	GAATGC	4 cut(s)	1276, 1453, 2294, 2994
PdmI	GAANNNNTTC	1 cut(s)	2058
PflMI	CCANNNNNTGG	1 cut(s)	2522
PkrI	GCNGC	7 cut(s)	1372, 2020, 2476, 2875, 3296, 3321, 4048
PleI	GAGTC	9 cut(s)	1030, 1700, 1733, 2160, 2200, 2372, 3170, 3622, 3832
PmaCI	CACGTG	1 cut(s)	1367
PmeI	GTTTAAAC	1 cut(s)	1690
PmlI	CACGTG	1 cut(s)	1367
PpsI	GAGTC	9 cut(s)	1030, 1700, 1733, 2160, 2200, 2372, 3170, 3622, 3832
Ppu21I	YACGTR	2 cut(s)	1367, 1821
PpuMI	RGGWCCY	1 cut(s)	2526
PscI	ACATGT	2 cut(s)	1158, 3770
PshBI	ATTAAT	1 cut(s)	2321
PsiI	TTATAA	1 cut(s)	3729
Psp1406I	AACGTT	2 cut(s)	415, 1336
Psp5II	RGGWCCY	1 cut(s)	2526
Psp6I	CCWGG	5 cut(s)	1505, 2728, 3203, 3789, 4218
PspCI	CACGTG	1 cut(s)	1367
PspGI	CCWGG	5 cut(s)	1505, 2728, 3203, 3789, 4218
PspN4I	GGNNCC	5 cut(s)	449, 490, 1525, 2527, 2528
PspPI	GGNCC	8 cut(s)	175, 448, 560, 966, 2111, 2526, 2805, 4080
PspPPI	RGGWCCY	1 cut(s)	2526
PspXI	VCTCGAGB	1 cut(s)	3901
PstI	CTGCAG	2 cut(s)	3324, 3535
PstNI	CAGNNNCTG	1 cut(s)	3071
PsuI	RGATCY	2 cut(s)	3284, 3452
PvuII	CAGCTG	1 cut(s)	3749
RseI	CAYNNNNRTG	6 cut(s)	1698, 2046, 2358, 2958, 3156, 3513
SapI	GCTCTTC	1 cut(s)	3930
SatI	GCNGC	7 cut(s)	1371, 2019, 2475, 2874, 3295, 3320, 4047
Sau96I	GGNCC	8 cut(s)	175, 448, 560, 966, 2111, 2526, 2805, 4080
ScaI	AGTACT	2 cut(s)	1500, 2765
SchI	GAGTC	9 cut(s)	1030, 1700, 1733, 2161, 2200, 2373, 3170, 3622, 3833
ScrFI	CCNGG	8 cut(s)	1267, 1507, 2730, 3205, 3791, 3818, 3989, 4220
SduI	GDGCHC	5 cut(s)	591, 3496, 3520, 3678, 4227
SfcI	CTRYAG	5 cut(s)	294, 497, 3320, 3531, 4174
Sfr274I	CTCGAG	1 cut(s)	3901
SfuI	TTCGAA	2 cut(s)	1541, 1646
SinI	GGWCC	5 cut(s)	560, 966, 2111, 2526, 2805
SlaI	CTCGAG	1 cut(s)	3901
SmiMI	CAYNNNNRTG	6 cut(s)	1698, 2046, 2358, 2958, 3156, 3513
SmlI	CTYRAG	9 cut(s)	260, 455, 602, 1583, 2816, 2831, 3399, 3416, 3901
SmoI	CTYRAG	9 cut(s)	260, 455, 602, 1583, 2816, 2831, 3399, 3416, 3901
SphI	GCATGC	1 cut(s)	4008
SseBI	AGGCCT	2 cut(s)	755, 982
SspI	AATATT	2 cut(s)	730, 2383
SspMI	CTAG	5 cut(s)	984, 1119, 2447, 3597, 4043
StuI	AGGCCT	2 cut(s)	755, 982
StyD4I	CCNGG	8 cut(s)	1265, 1505, 2728, 3203, 3789, 3816, 3987, 4218
StyI	CCWWGG	3 cut(s)	378, 983, 1053
TaaI	ACNGT	9 cut(s)	51, 298, 707, 809, 921, 1498, 3085, 3364, 3894
TatI	WGTACW	5 cut(s)	1498, 1551, 2763, 3616, 4150
TauI	GCSGC	2 cut(s)	3297, 4049
TseFI	GTSAC	7 cut(s)	45, 312, 1048, 2246, 3014, 3147, 3211
TseI	GCWGC	5 cut(s)	1370, 2018, 2474, 2873, 3319
Tsp45I	GTSAC	7 cut(s)	45, 312, 1048, 2246, 3014, 3147, 3211
TspGWI	ACGGA	6 cut(s)	551, 552, 880, 2276, 3832, 3928
Van91I	CCANNNNNTGG	1 cut(s)	2522
Vha464I	CTTAAG	2 cut(s)	602, 3416
VneI	GTGCAC	1 cut(s)	3492
VpaK11BI	GGWCC	5 cut(s)	560, 966, 2111, 2526, 2805
VspI	ATTAAT	1 cut(s)	2321
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	8 cut(s)	1106, 1127, 1608, 1949, 2057, 2404, 3436, 3582
XbaI	TCTAGA	1 cut(s)	2446
XceI	RCATGY	4 cut(s)	1162, 3774, 3782, 4008
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3088
XhoI	CTCGAG	1 cut(s)	3901
XmaJI	CCTAGG	1 cut(s)	983
XmiI	GTMKAC	2 cut(s)	1704, 1715
XmnI	GAANNNNTTC	1 cut(s)	2058
XspI	CTAG	5 cut(s)	984, 1119, 2447, 3597, 4043
ZraI	GACGTC	1 cut(s)	3147
ZrmI	AGTACT	2 cut(s)	1500, 2765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.