Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Forward (+)

16407593 .. 16417665

Gene Structure 10073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4965 bp

ATGAAAGAGGGGTTGAGATCTGGCAAGTTTAAGGTTGAGAAAGAAAAAGGTTCTTTGAAGCAAACAGTGGTGGGAAACAAAGGGGATGAGGAAACCCCACATTTGGTTTTGGACGGTGGGGATGGACCGGAATTTGATCATGTGGTTCAGACTGGGAATGGTGGTGGTGTTGTTGAGAGGAAAAAGGTGAATGGTAAAGTGCCAATTGTTGGTAGGGTTCTGCGGTCACGGGTTGTGGCGAATGGTGGTGGTGAGGGAGTAGGGGAGACTGGGAAGAAGAGGAGGTTGGTGGATAATGGGGATGATAAGAAGGGGAAGGAAGAAAAGGTGGGAGGTCAAGTGGGGATTGCTGGTAGGGTTCTGCGGTCGCGGACTGTGGTGAATGATGGGGAGATGGAGGATGTGGGAGTTGTGGAGAAAAGGAAGAGGCAGAGGTTGGCTAAGAAGGGTGAAAATGTTGTTGATGATGGTCTTGAGAAGAAGAAGGGGAAGGAAGAGGGGGATGGTAAAGTGCTGATTGCTGGCCGGGTTCTGCGGTCGCGGACTGTGGTGAATGGTGAGTGTGATAAGGCGGAGAGTGGTGGAGTTAGGACAGAGGGTGATGGTGGTAAGGCAGAGAGTGATGGTGGTAAGGCAGAGAGTAATGGTGATATGGCGGAGAGCGGTGGTTATAAGGCGGAGAGTGGTGGTGTTAAGGCAGAGAGTGATGGTGATATGGCCGAGAGTGGTGGTGATATGGCGCAGAATGGTGGTGATAAGACAGAGGTTGATGGTGTTAAGACAGAGAGTAACAGTGATAGGGCAGAGAGTGATAGTGATATGGGTGAGAAAGAAAATGTGGAAGTAGCTGAGTTTGGGAAGAAAAGTAGGTTGGTTGGTAATGGTGGTGGCGTGGAGAAAAAGAAGGTGAAGGAAACAGAGGTGGGTGGTAAAGCGCCAGTTGCTGGTCGGGTTCTGCGGTCACGGACTGTGGTGAATGGTGGATTTATGGCAGAGAGTGATGGTGCTCTGGTTAGGGAAAGTAGACAGAAGGATGTGTCTCACCAGAAGTTCAGCGATGTGAAAAATGAAGGAGAGGATCAGTTGGTTACAGGGTTTACAAAGAAGTTGAAAGGTAAGCGTGGGAGACCACCCAAGGTGAAAAAAGAAGAAAGTGGGAGGTCCGGTGATGGACTTAGGAAGTTGAAAGGTAAGCGTGGGAGACCACCCAAGGTGAAAAAAGAAGAAAGTGGGAGGTCCGGTGATGGACTTAGGAAGTTGAAAGGTAAGCGTGGGAGACCGGTGAAAAAAGAAAGAGAAGAGAGTGATCTCTTGGATGGTCGGTTGAGAAAGAAGTTAAGATCTGGGCAGAATAGTAGTGAGAATTTGAAAGGAAATCTTGACGAGGAAAGAAATGTGTACTTCAAAAGAAAATCGGGTTCAAAGTCACAAGAAAGAGTGGAACCAAGTACAGTAACTAATGATTCATACCTGGAAAGGAAGAGGATTAGGAAAGAATTGGATGTGAAGGCCTCTTCTCAAGTTAAAAGGGATAAAAAAGGAAGATATGTGGAGAGTGAGGACAGTGAGGATGGGGATGAACATAAAGAACAGAAACAAAAACAAAGCGGAGATAATAAACAGAGAAGCAAGTTGAAGGATGGCATACGTGAGCTAAAACAGGCAGTGAGTGAAAAAATAGTGAAAATGATTCTGGCTGCAGGCTGGACGGTTGAGCGTAGGCAGAGGAATGGCAGAGAATACATGGATGCAGTGTATGTATGTCCAGCAGGAAAGACTCACTGGTCAGTAACCAAGGCTTACAATGCTTTTAAATTGGGTTGTGAAAATGGCGATCCAATGATTTGTAAGGACGGTTTCAAATTTACGCCGATACCACCAGAGGAACTCAGCATGCTACAGAGGTTAGTTAATAAAAAGGTGCGGAAAAATAAGAAGAAGAAGAAGGGAAAGGGTAAAGGACAGGGAAACAGTAATGGAAAGCAGAAGGCAAAGGATGGGGATGTATCGGATGAAGGTATTGAAGAGACGAGGAAAAAGAAACTGGGTAAGTCACTGAAATGGAAACATTTGCTTCTTGAGAAGGATGCATCAACAAGTACAGCATGCGAGGGAGAGCTGCGTTTGGTCCAACGTCAGAAGCGGCAGAAGACTCAGAATAGAAAGCGATGTGCTTTGTTGGTTCGCAACTCTGAGAATGCGGATTCTGAAAATGATGGCTACATACCATATGATGGGAAGAGAACAGTACTTGCCTGGATGGTTGACTTGGGAACCCTGTCACTTAATTCAAAGTTGAAGTACATGAACAAGAGAAAGAGAAAAGTGCTGCTTGAGGGTAAAATTACAAGAGATGGAATTCATTGTGGTTGCTGTGACAAAACCATCTCACTTTCAGAATTTGTAACTCATACCAGAAGTGATTATTCTGAGCCACTTAGATATATATTGACAGACTCTGGGTCTTCCCTTTTGCATTGCCTGCTAAACTCATGGAATAAACAGGAAGAGTCTGAAAGTCGGGGATTCCACTTTGTAGAGGTTACTAAGGAAGACCCAAATGATGATACATGTGGGATCTGTGGAGATGGAGGAGATTTGATCTGTTGTGATGGTTGTCCATCAACATTCCATAAAAGTTGCTTGGAGATAAAGGCAAAGGATGCTGTAAATGGTGATTCCAGCAGTCCATCCTTCTGCGCAAAGAATTGCCAAGAGCTATTTGAGAAACTAAAAAGGCTTCTTGGAGTTAGACATGAAGTGGAAGAAGGGTTTTCATTGACTCTCCTTCGCCGATTTAATATGGGTGATACACCACAGAAGGTTGATTGCAACTCAAAGCTAATTGAATGCAATGCCAAACTGGCTGTTGCATTTTTAATAATGGATGAGTGTTTTCTGCCTATGGTTGACCAAAGAAGTGGAGTCAATCTGATCCATAACATTCTCTATAATCGTGGGTCAAATTTTAATCGACTGAATTACGGTGGTTTCTTCACTGCAATTCTAGAGAGGGGTGATGAGATCATATGTGCCGCAACCATCAGAATCCATGGAAACTATGTAGCAGAGATGCCGTTTATTGGAACCCGCTATATGTATAGGCGTCAAGGAATGTGCCGCCGGCTTCTAAGTGCGATTGAATCTGCTCTCTGCTCTCTGAAAGTTGAAAGATTGGTCATACCTGCAATCTCAGAACTGACGGAAACGTGGACTTCTGTTTTTGGTTTTAAGTCCCTTGAAGAATCAAGCAAGCAGAAGATGAAGAACATGAATATCTTGGTTTTCCCTGGTGTAGATATCTTACAGAAACCATTGTTGAACCAGTTAACAGAAAAAAACGAGAGTCCTGTGAAAGGTTTGAGTTTTGCCGATCTCGAGCATCACAAAACCATTAAGGATGTGGTATGTAATACTGAAGAGGGACGTTTGGCTCGATCTGACAGTGAAGCAACTGCACCTTGTGTGCATGAGGGAAAGGATGAGCTTGCTGCTGTTCAATCCGACACACAGCTTCTCTGTGATGTTTCTCGTGATCATCTGGAGAGCAAGACCAATACTATCCCAATTCCTACTGATTCAGTGTGTGATGTTCTTGAACCAACCAAAGAGATAAATGAATGCCAAAATTCTGCCTCTGTTGCTGATGTGAGGGCATTGGAATTGGTCACCAAACAGAACCAGCCGGAGCTGTTATGCGATACTGCTGAGGGTTTCTTGGCTGGATCAGATGCTGAGGCAACTGCATCCTTTAAACACAAGGCAAATGATGAACTTGTTGCTGTTCAATCTGATACACAGCTTCCTTCTGGTGTTTCACATGATAATGTGGAGGGGGAAAACAATTCTATGACAATTCCTGCTGGTCCAATTAGTGATGCTCATGAACAAACTGAAGATACACAGCTTCTTTGTGGTGTTTCTCATGATAACCGGGAGGTAAACAATACTCTGACAATTCCTACTGGTTCAATTAGTGACAGTCATGAACAAACTGAAGAGAGAAATGAACCTCAAAATTCAGACTCTGTTCCTGATGTTAAGGAAGTGGAATTGGGCACCAAACAGAACCAATATAGCATGTCTAAAGTGGAAAGGAAATCTGATCTTCATCCTGAAGGTAAATCTGATCTTCATCCTGAAGGTACTGATTCTGCTATAGAAGTTCGTTGTGCTTTGGGGGAGGGTACTGAAAACATTGACCGTAAGGTGAGAATGGAAGCTGACATCGTTAAACCCCTTGGTTCATATGAAGAATTTTTTTGCCCATGTACTGCAAATAATGCTACTGAACTGCAGAATGTATCTTTAGTTCATGAAGCCAATGTTTCCAGTGAAAATATTGTTCGCACTGGTTCAGAGATTACAACTCAGATATCTCATGATGCAAGGGACCATAAGCATCATGATTCTCAACATCTGCAGGTTGAAGGATCTATTTTCTGTTCAGATGAAAAGCTGCTTGAGACTTTTGAAGTGGAGAATAACCATTCTTTTATTCAGCACACTTCTATAGTGACTGAAGGGGTGCATCCAGAATCTATCAAGTTTTCCGACTCTAGAATTCTGACCAAAACTGGCAAGGTAGCCAGTGATGGATTTCACCAGGCTGCTGGGTTGACTCATGAAGAAGCAGATGATTCTAAAGGTCATTCTACAACTTTTCTGTTTGGTAGCAGCATTATTTGTACCTCTGGCAATGGGAAGAACACTCACAAAGTTGTCTCAACTCCAGCTGACAACAATTCTCATCCGTCTTGTGGGGCTAATATCAATAGTAATGGGAATTCCAATGCCCCTGATGTCCCTGGTGTCTACTTCACTTCCAATGGCGCTCATATGAACACCAAGTCCTTGCAGCAATCTGATTTTGATTCTGATATTGATAATAACAGTATCAGACAGCCCAACTCGAGCAATACATGTGCATCTGGTGGGGTAACTCATTTGGTCCTTCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

1654

Amino Acids

181.61

Weight (kDa)

7.22

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7028	PF22970	550 - 604	3.9e-09	Domain of unknown function (DUF7028)
TDBD	PF16135	780 - 828	2.1e-14	Tify domain binding domain
IDM1_C	PF23209	966 - 1105	1.4e-59	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AasI	GACNNNNNNGTC	1 cut(s)	1783
Acc16I	TGCGCA	1 cut(s)	2701
Acc36I	ACCTGC	2 cut(s)	3193, 4414
AccB1I	GGYRCC	1 cut(s)	4058
AccB7I	CCANNNNNTGG	3 cut(s)	209, 944, 2234
AccBSI	CCGCTC	1 cut(s)	663
AccI	GTMKAC	2 cut(s)	1024, 4815
AccII	CGCG	2 cut(s)	370, 541
AclWI	GGATC	6 cut(s)	1086, 1829, 2585, 2929, 3733, 4441
AcoI	YGGCCR	2 cut(s)	523, 717
AcuI	CTGAAG	7 cut(s)	3438, 3915, 4017, 4137, 4161, 4542, 4940
AcyI	GRCGYC	1 cut(s)	3106
AdeI	CACNNNGTG	1 cut(s)	3464
AfaI	GTAC	9 cut(s)	1400, 1450, 2101, 2250, 2303, 4147, 4189, 4273, 4690
AfiI	CCNNNNNNNGG	7 cut(s)	103, 209, 944, 2234, 3083, 3356, 4760
AflIII	ACRYGT	2 cut(s)	2570, 4922
AgeI	ACCGGT	1 cut(s)	1279
AhdI	GACNNNNNGTC	1 cut(s)	2461
AjnI	CCWGG	5 cut(s)	1470, 2255, 3289, 4605, 4807
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 854, 886
AloI	GAACNNNNNNTCC	2 cut(s)	4835, 4867
Alw21I	GWGCWC	1 cut(s)	1009
Alw26I	GTCTC	8 cut(s)	260, 1044, 1120, 1195, 1270, 2021, 4460, 4729
AlwI	GGATC	6 cut(s)	1086, 1829, 2585, 2929, 3733, 4441
AlwNI	CAGNNNCTG	4 cut(s)	944, 2459, 3734, 4028
Ama87I	CYCGRG	2 cut(s)	3377, 4912
AoxI	GGCC	3 cut(s)	523, 717, 1509
ApeKI	GCWGC	8 cut(s)	1697, 2119, 2329, 3491, 4459, 4610, 4677, 4858
AsiGI	ACCGGT	1 cut(s)	1279
AspLEI	GCGC	4 cut(s)	742, 937, 2702, 4835
AspS9I	GGNCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
AsuC2I	CCSGG	2 cut(s)	527, 3935
AvaI	CYCGRG	2 cut(s)	3377, 4912
AvaII	GGWCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
BaeGI	GKGCMC	1 cut(s)	4061
BanI	GGYRCC	1 cut(s)	4058
BauI	CACGAG	1 cut(s)	3531
BbsI	GAAGAC	3 cut(s)	2156, 2457, 2559
Bbv12I	GWGCWC	1 cut(s)	1009
BbvCI	CCTCAGC	2 cut(s)	3708, 3735
BbvI	GCAGC	8 cut(s)	1684, 2106, 2316, 3478, 4446, 4597, 4689, 4870
BceAI	ACGGC	1 cut(s)	3061
BciT130I	CCWGG	5 cut(s)	1472, 2257, 3291, 4607, 4809
BclI	TGATCA	2 cut(s)	136, 3535
BcnI	CCSGG	2 cut(s)	527, 3935
BcoDI	GTCTC	8 cut(s)	260, 1044, 1120, 1195, 1270, 2021, 4460, 4729
BfaI	CTAG	2 cut(s)	3008, 4560
BfmI	CTRYAG	6 cut(s)	1698, 1898, 4158, 4295, 4421, 4512
BfoI	RGCGCY	2 cut(s)	938, 4836
BfuAI	ACCTGC	2 cut(s)	3193, 4414
BglI	GCCNNNNNGGC	1 cut(s)	2864
BglII	AGATCT	2 cut(s)	17, 1340
BmcAI	AGTACT	1 cut(s)	2250
Bme1390I	CCNGG	7 cut(s)	527, 1472, 2257, 3291, 3935, 4607, 4809
Bme18I	GGWCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
BmeRI	GACNNNNNGTC	1 cut(s)	2461
BmeT110I	CYCGRG	2 cut(s)	3377, 4912
BmgT120I	GGNCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
BmiI	GGNNCC	5 cut(s)	1443, 2275, 3088, 4060, 4394
BmrFI	CCNGG	7 cut(s)	527, 1472, 2257, 3291, 3935, 4607, 4809
BmrI	ACTGGG	3 cut(s)	162, 279, 2054
BmuI	ACTGGG	3 cut(s)	162, 279, 2054
BpiI	GAAGAC	3 cut(s)	2156, 2457, 2559
BpmI	CTGGAG	2 cut(s)	3563, 4716
Bpu10I	CCTNAGC	2 cut(s)	3708, 3735
BpuEI	CTTGAG	5 cut(s)	494, 1503, 2099, 2354, 4484
BpuMI	CCSGG	2 cut(s)	527, 3935
BsaAI	YACGTR	1 cut(s)	1649
BsaBI	GATNNNNATC	2 cut(s)	4110, 4134
BsaHI	GRCGYC	1 cut(s)	3106
BsaI	GGTCTC	3 cut(s)	1120, 1195, 1270
BsaJI	CCNNGG	7 cut(s)	1134, 1209, 1794, 3052, 3289, 4240, 4807
BsaWI	WCCGGW	4 cut(s)	127, 1163, 1238, 1279
BsaXI	ACNNNNNCTCC	6 cut(s)	324, 354, 1150, 1180, 1225, 1255
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 209, 944, 2234, 3083, 3356, 4760
Bse118I	RCCGGY	2 cut(s)	1279, 3123
Bse3DI	GCAATG	3 cut(s)	2476, 2860, 4705
Bse8I	GATNNNNATC	2 cut(s)	4110, 4134
BseBI	CCWGG	5 cut(s)	1472, 2257, 3291, 4607, 4809
BseDI	CCNNGG	7 cut(s)	1134, 1209, 1794, 3052, 3289, 4240, 4807
BseJI	GATNNNNATC	2 cut(s)	4110, 4134
BseLI	CCNNNNNNNGG	7 cut(s)	103, 209, 944, 2234, 3083, 3356, 4760
BseMI	GCAATG	3 cut(s)	2476, 2860, 4705
BseMII	CTCAG	9 cut(s)	840, 1903, 2168, 2184, 2421, 3207, 3699, 3726, 4385
BseRI	GAGGAG	2 cut(s)	295, 2607
BseSI	GKGCMC	1 cut(s)	4061
BseXI	GCAGC	8 cut(s)	1684, 2106, 2316, 3478, 4446, 4597, 4689, 4870
BseYI	CCCAGC	1 cut(s)	4613
BsgI	GTGCAG	1 cut(s)	3441
Bsh1236I	CGCG	2 cut(s)	370, 541
Bsh1285I	CGRYCG	2 cut(s)	368, 539
BshFI	GGCC	3 cut(s)	525, 719, 1511
BshNI	GGYRCC	1 cut(s)	4058
BshTI	ACCGGT	1 cut(s)	1279
BsiEI	CGRYCG	2 cut(s)	368, 539
BsiHKAI	GWGCWC	1 cut(s)	1009
BsiHKCI	CYCGRG	2 cut(s)	3377, 4912
BsiSI	CCGG	8 cut(s)	128, 526, 1164, 1239, 1280, 3124, 3686, 3934
BslFI	GGGAC	4 cut(s)	3220, 3438, 4406, 4790
BslI	CCNNNNNNNGG	7 cut(s)	103, 209, 944, 2234, 3083, 3356, 4760
BsmAI	GTCTC	8 cut(s)	260, 1044, 1120, 1195, 1270, 2021, 4460, 4729
BsmBI	CGTCTC	1 cut(s)	2021
BsmFI	GGGAC	4 cut(s)	3220, 3438, 4406, 4790
BsmI	GAATGC	3 cut(s)	2203, 2855, 3626
BsnI	GGCC	3 cut(s)	525, 719, 1511
Bso31I	GGTCTC	3 cut(s)	1120, 1195, 1270
BsoBI	CYCGRG	2 cut(s)	3377, 4912
Bsp1286I	GDGCHC	2 cut(s)	1009, 4061
Bsp19I	CCATGG	1 cut(s)	3052
BspANI	GGCC	3 cut(s)	525, 719, 1511
BspCNI	CTCAG	9 cut(s)	841, 1902, 2167, 2185, 2422, 3206, 3700, 3727, 4384
BspFNI	CGCG	2 cut(s)	370, 541
BspHI	TCATGA	7 cut(s)	3883, 3925, 3985, 4315, 4381, 4405, 4624
BspLI	GGNNCC	5 cut(s)	1443, 2275, 3088, 4060, 4394
BspMAI	CTGCAG	3 cut(s)	1702, 4299, 4425
BspMI	ACCTGC	2 cut(s)	3193, 4414
BspPI	GGATC	6 cut(s)	1086, 1829, 2585, 2929, 3733, 4441
BspT107I	GGYRCC	1 cut(s)	4058
BspTNI	GGTCTC	3 cut(s)	1120, 1195, 1270
BsrBI	CCGCTC	1 cut(s)	663
BsrDI	GCAATG	3 cut(s)	2476, 2860, 4705
BsrFI	RCCGGY	2 cut(s)	1279, 3123
BssAI	RCCGGY	2 cut(s)	1279, 3123
BssECI	CCNNGG	7 cut(s)	1134, 1209, 1794, 3052, 3289, 4240, 4807
BssNI	GRCGYC	1 cut(s)	3106
BssSI	CACGAG	1 cut(s)	3531
BssT1I	CCWWGG	5 cut(s)	1134, 1209, 1794, 3052, 4240
Bst2BI	CACGAG	1 cut(s)	3531
Bst2UI	CCWGG	5 cut(s)	1472, 2257, 3291, 4607, 4809
BstACI	GRCGYC	1 cut(s)	3106
BstAPI	GCANNNNNTGC	3 cut(s)	2482, 2663, 4283
BstBAI	YACGTR	1 cut(s)	1649
BstC8I	GCNNGC	8 cut(s)	523, 1702, 1895, 2107, 2483, 3125, 3254, 3489
BstDSI	CCRYGG	1 cut(s)	3052
BstEII	GGTNACC	1 cut(s)	3667
BstENI	CCTNNNNNAGG	1 cut(s)	3354
BstFNI	CGCG	2 cut(s)	370, 541
BstH2I	RGCGCY	2 cut(s)	938, 4836
BstHHI	GCGC	4 cut(s)	742, 937, 2702, 4835
BstMAI	GTCTC	8 cut(s)	260, 1044, 1120, 1195, 1270, 2021, 4460, 4729
BstMCI	CGRYCG	2 cut(s)	368, 539
BstMWI	GCNNNNNNNGC	7 cut(s)	941, 1805, 2482, 2663, 2864, 3641, 4283
BstNI	CCWGG	5 cut(s)	1472, 2257, 3291, 4607, 4809
BstNSI	RCATGY	5 cut(s)	1897, 2109, 2574, 4084, 4926
BstPI	GGTNACC	1 cut(s)	3667
BstSCI	CCNGG	7 cut(s)	525, 1470, 2255, 3289, 3933, 4605, 4807
BstSFI	CTRYAG	6 cut(s)	1698, 1898, 4158, 4295, 4421, 4512
BstSLI	GKGCMC	1 cut(s)	4061
BstUI	CGCG	2 cut(s)	370, 541
BstV1I	GCAGC	8 cut(s)	1684, 2106, 2316, 3478, 4446, 4597, 4689, 4870
BstV2I	GAAGAC	3 cut(s)	2156, 2457, 2559
BstX2I	RGATCY	4 cut(s)	17, 1340, 2577, 4433
BstXI	CCANNNNNNTGG	2 cut(s)	2921, 4613
BstYI	RGATCY	4 cut(s)	17, 1340, 2577, 4433
BsuRI	GGCC	3 cut(s)	525, 719, 1511
BtgI	CCRYGG	1 cut(s)	3052
BtgZI	GCGATG	2 cut(s)	1071, 2182
BtsI	GCAGTG	3 cut(s)	1671, 1758, 2997
BveI	ACCTGC	2 cut(s)	3193, 4414
Cac8I	GCNNGC	8 cut(s)	523, 1702, 1895, 2107, 2483, 3125, 3254, 3489
CaiI	CAGNNNCTG	4 cut(s)	944, 2459, 3734, 4028
CciI	TCATGA	7 cut(s)	3883, 3925, 3985, 4315, 4381, 4405, 4624
CfoI	GCGC	4 cut(s)	742, 937, 2702, 4835
Cfr10I	RCCGGY	2 cut(s)	1279, 3123
Cfr13I	GGNCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
CseI	GACGC	1 cut(s)	3095
Csp6I	GTAC	9 cut(s)	1399, 1449, 2100, 2249, 2302, 4146, 4188, 4272, 4689
CspAI	ACCGGT	1 cut(s)	1279
CviQI	GTAC	9 cut(s)	1399, 1449, 2100, 2249, 2302, 4146, 4188, 4272, 4689
DraI	TTTAAA	2 cut(s)	1813, 3754
DraIII	CACNNNGTG	1 cut(s)	3464
DrdI	GACNNNNNNGTC	1 cut(s)	1783
DriI	GACNNNNNGTC	1 cut(s)	2461
DseDI	GACNNNNNNGTC	1 cut(s)	1783
EaeI	YGGCCR	2 cut(s)	523, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	2461
EciI	GGCGGA	3 cut(s)	587, 671, 692
Eco130I	CCWWGG	5 cut(s)	1134, 1209, 1794, 3052, 4240
Eco147I	AGGCCT	1 cut(s)	1511
Eco31I	GGTCTC	3 cut(s)	1120, 1195, 1270
Eco32I	GATATC	2 cut(s)	3301, 4377
Eco47I	GGWCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
Eco57I	CTGAAG	7 cut(s)	3438, 3915, 4017, 4137, 4161, 4542, 4940
Eco88I	CYCGRG	2 cut(s)	3377, 4912
Eco91I	GGTNACC	1 cut(s)	3667
EcoNI	CCTNNNNNAGG	1 cut(s)	3354
EcoO65I	GGTNACC	1 cut(s)	3667
EcoRI	GAATTC	3 cut(s)	2358, 4563, 4786
EcoRII	CCWGG	5 cut(s)	1470, 2255, 3289, 4605, 4807
EcoRV	GATATC	2 cut(s)	3301, 4377
EcoT14I	CCWWGG	5 cut(s)	1134, 1209, 1794, 3052, 4240
EcoT22I	ATGCAT	1 cut(s)	2092
ErhI	CCWWGG	5 cut(s)	1134, 1209, 1794, 3052, 4240
Esp3I	CGTCTC	1 cut(s)	2021
FalI	AAGNNNNNCTT	4 cut(s)	1362, 1394, 2316, 2348
FaqI	GGGAC	4 cut(s)	3220, 3438, 4406, 4790
FauI	CCCGC	1 cut(s)	3098
FauNDI	CATATG	4 cut(s)	2230, 3029, 4249, 4839
FbaI	TGATCA	2 cut(s)	136, 3535
FblI	GTMKAC	2 cut(s)	1024, 4815
FspBI	CTAG	2 cut(s)	3008, 4560
FspI	TGCGCA	1 cut(s)	2701
GlaI	GCGC	4 cut(s)	741, 936, 2701, 4834
GsaI	CCCAGC	1 cut(s)	4617
GsuI	CTGGAG	2 cut(s)	3563, 4716
HaeII	RGCGCY	2 cut(s)	938, 4836
HaeIII	GGCC	3 cut(s)	525, 719, 1511
HapII	CCGG	8 cut(s)	128, 526, 1164, 1239, 1280, 3124, 3686, 3934
HgaI	GACGC	1 cut(s)	3095
HhaI	GCGC	4 cut(s)	742, 937, 2702, 4835
Hin1I	GRCGYC	1 cut(s)	3106
Hin6I	GCGC	4 cut(s)	740, 935, 2700, 4833
HinP1I	GCGC	4 cut(s)	740, 935, 2700, 4833
HincII	GTYRAC	4 cut(s)	2266, 2911, 3330, 4620
HindII	GTYRAC	4 cut(s)	2266, 2911, 3330, 4620
HpaI	GTTAAC	1 cut(s)	3330
HpaII	CCGG	8 cut(s)	128, 526, 1164, 1239, 1280, 3124, 3686, 3934
HpyCH4IV	ACGT	4 cut(s)	1648, 2134, 3209, 3427
HpyF10VI	GCNNNNNNNGC	7 cut(s)	941, 1805, 2482, 2663, 2864, 3641, 4283
HpySE526I	ACGT	4 cut(s)	1648, 2134, 3209, 3427
Hsp92I	GRCGYC	1 cut(s)	3106
HspAI	GCGC	4 cut(s)	740, 935, 2700, 4833
KroI	GCCGGC	1 cut(s)	3123
KroNI	GCCGGC	1 cut(s)	3125
Ksp22I	TGATCA	2 cut(s)	136, 3535
KspAI	GTTAAC	1 cut(s)	3330
LmnI	GCTCC	1 cut(s)	3688
Lsp1109I	GCAGC	8 cut(s)	1684, 2106, 2316, 3478, 4446, 4597, 4689, 4870
MaeI	CTAG	2 cut(s)	3008, 4560
MaeII	ACGT	4 cut(s)	1648, 2134, 3209, 3427
MbiI	CCGCTC	1 cut(s)	663
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	4 cut(s)	17, 1340, 2577, 4433
MhlI	GDGCHC	2 cut(s)	1009, 4061
MmeI	TCCRAC	3 cut(s)	2155, 3528, 4578
Mph1103I	ATGCAT	1 cut(s)	2092
MroNI	GCCGGC	1 cut(s)	3123
MslI	CAYNNNNRTG	2 cut(s)	2059, 3825
MspA1I	CMGCKG	1 cut(s)	4736
MspI	CCGG	8 cut(s)	128, 526, 1164, 1239, 1280, 3124, 3686, 3934
MspR9I	CCNGG	7 cut(s)	527, 1472, 2257, 3291, 3935, 4607, 4809
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	3 cut(s)	2203, 2855, 3626
MvaI	CCWGG	5 cut(s)	1472, 2257, 3291, 4607, 4809
MvnI	CGCG	2 cut(s)	370, 541
MwoI	GCNNNNNNNGC	7 cut(s)	941, 1805, 2482, 2663, 2864, 3641, 4283
NaeI	GCCGGC	1 cut(s)	3125
NciI	CCSGG	2 cut(s)	527, 3935
NcoI	CCATGG	1 cut(s)	3052
NdeI	CATATG	4 cut(s)	2230, 3029, 4249, 4839
NgoMIV	GCCGGC	1 cut(s)	3123
NlaIV	GGNNCC	5 cut(s)	1443, 2275, 3088, 4060, 4394
NmeAIII	GCCGAG	1 cut(s)	745
NmuCI	GTSAC	9 cut(s)	225, 960, 1425, 2052, 2280, 2375, 3667, 3977, 4516
NsbI	TGCGCA	1 cut(s)	2701
NsiI	ATGCAT	1 cut(s)	2092
NspI	RCATGY	5 cut(s)	1897, 2109, 2574, 4084, 4926
PaeI	GCATGC	2 cut(s)	1897, 2109
PaeR7I	CTCGAG	2 cut(s)	3377, 4912
PagI	TCATGA	7 cut(s)	3883, 3925, 3985, 4315, 4381, 4405, 4624
PceI	AGGCCT	1 cut(s)	1511
PciI	ACATGT	2 cut(s)	2570, 4922
PcsI	WCGNNNNNNNCGW	1 cut(s)	3433
PctI	GAATGC	3 cut(s)	2203, 2855, 3626
PdiI	GCCGGC	1 cut(s)	3125
PflMI	CCANNNNNTGG	3 cut(s)	209, 944, 2234
PinAI	ACCGGT	1 cut(s)	1279
Ppu21I	YACGTR	1 cut(s)	1649
PscI	ACATGT	2 cut(s)	2570, 4922
PsiI	TTATAA	1 cut(s)	672
Psp6I	CCWGG	5 cut(s)	1470, 2255, 3289, 4605, 4807
PspEI	GGTNACC	1 cut(s)	3667
PspFI	CCCAGC	1 cut(s)	4613
PspGI	CCWGG	5 cut(s)	1470, 2255, 3289, 4605, 4807
PspN4I	GGNNCC	5 cut(s)	1443, 2275, 3088, 4060, 4394
PspPI	GGNCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
PspXI	VCTCGAGB	1 cut(s)	4912
PsrI	GAACNNNNNNTAC	2 cut(s)	4296, 4328
PstI	CTGCAG	3 cut(s)	1702, 4299, 4425
PstNI	CAGNNNCTG	4 cut(s)	944, 2459, 3734, 4028
PsuI	RGATCY	4 cut(s)	17, 1340, 2577, 4433
PvuII	CAGCTG	1 cut(s)	4736
RsaI	GTAC	9 cut(s)	1400, 1450, 2101, 2250, 2303, 4147, 4189, 4273, 4690
RsaNI	GTAC	9 cut(s)	1399, 1449, 2100, 2249, 2302, 4146, 4188, 4272, 4689
RseI	CAYNNNNRTG	2 cut(s)	2059, 3825
Sau96I	GGNCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
ScaI	AGTACT	1 cut(s)	2250
ScrFI	CCNGG	7 cut(s)	527, 1472, 2257, 3291, 3935, 4607, 4809
SduI	GDGCHC	2 cut(s)	1009, 4061
SfcI	CTRYAG	6 cut(s)	1698, 1898, 4158, 4295, 4421, 4512
Sfr274I	CTCGAG	2 cut(s)	3377, 4912
SinI	GGWCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
SlaI	CTCGAG	2 cut(s)	3377, 4912
SmiMI	CAYNNNNRTG	2 cut(s)	2059, 3825
SmlI	CTYRAG	7 cut(s)	473, 1518, 2078, 2333, 3377, 4463, 4912
SmoI	CTYRAG	7 cut(s)	473, 1518, 2078, 2333, 3377, 4463, 4912
SphI	GCATGC	2 cut(s)	1897, 2109
SseBI	AGGCCT	1 cut(s)	1511
SspI	AATATT	1 cut(s)	4342
SspMI	CTAG	2 cut(s)	3008, 4560
StuI	AGGCCT	1 cut(s)	1511
StyD4I	CCNGG	7 cut(s)	525, 1470, 2255, 3289, 3933, 4605, 4807
StyI	CCWWGG	5 cut(s)	1134, 1209, 1794, 3052, 4240
TaiI	ACGT	4 cut(s)	1651, 2137, 3212, 3430
TaqI	TCGA	4 cut(s)	2974, 3378, 3436, 4913
TatI	WGTACW	6 cut(s)	1398, 1448, 2099, 2248, 2301, 4271
TauI	GCSGC	3 cut(s)	2146, 3038, 3123
TseFI	GTSAC	9 cut(s)	225, 960, 1425, 2052, 2280, 2375, 3667, 3977, 4516
TseI	GCWGC	8 cut(s)	1697, 2119, 2329, 3491, 4459, 4610, 4677, 4858
Tsp45I	GTSAC	9 cut(s)	225, 960, 1425, 2052, 2280, 2375, 3667, 3977, 4516
TspGWI	ACGGA	3 cut(s)	979, 3218, 4743
Van91I	CCANNNNNTGG	3 cut(s)	209, 944, 2234
VpaK11BI	GGWCC	7 cut(s)	125, 1161, 1236, 2128, 3866, 4393, 4951
XagI	CCTNNNNNAGG	1 cut(s)	3354
XbaI	TCTAGA	2 cut(s)	3007, 4559
XceI	RCATGY	5 cut(s)	1897, 2109, 2574, 4084, 4926
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3400
XhoI	CTCGAG	2 cut(s)	3377, 4912
XmiI	GTMKAC	2 cut(s)	1024, 4815
XspI	CTAG	2 cut(s)	3008, 4560
ZrmI	AGTACT	1 cut(s)	2250
Zsp2I	ATGCAT	1 cut(s)	2092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.