Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Reverse (-)

28602463 .. 28603035

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1198600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGAAACGCGTTTCTTCTTCAAGGTGGGGACTGCGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATTCGTGACACCTTCAGAATTCTCCTCCAAATGGGCATCGTTTTGATGATCGGAGGCCAAATGCCCGTCGTCAAGGTGGGAAGAATGGCGGGTCAGTTTGTGAAACCCAAATCGGATTCTTTTGAGGAGAAGAATGGTGTGAAGCTGCCTAGTTACAGAGGGGATAATGTGAACGGAGACGCCTTCGATTTACAGTCGAGGACTCCGGACCCCCAGAGACTGATTAGAGCCTATTGTCAATCTGCTGCTACTCTCAACCTTCTCAGGGCTTTCACTACTGGAGGTTATGCAGTTATGCAGAGGGTCACACAGTGGAACTTGGATTTCACGGAGCACAGCGAGCAAGGTGATAGATATCGGGAGCTAGCTTCCAGGGTTGATAAGGCTCTCGGATTCATGACCGCTGCCGGTCTCACATTCTCTTCCCTCCCAGGCTCAAATTTGCTGTTTTTACTTGGAATGGAGCAACAATTGAGATGGATGGCAGTACTGAAAACCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

191

Amino Acids

21.16

Weight (kDa)

8.6

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	2 - 163	2.7e-68	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	2 cut(s)	158, 471
AcsI	RAATTY	2 cut(s)	87, 508
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	100, 334
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	23, 49, 58
AjnI	CCWGG	2 cut(s)	440, 499
AluBI	AGCT	4 cut(s)	45, 214, 433, 437
AluI	AGCT	4 cut(s)	45, 214, 433, 437
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	3 cut(s)	240, 280, 485
AlwNI	CAGNNNCTG	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	214, 314, 473
ApoI	RAATTY	2 cut(s)	87, 508
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	201, 301, 460
BccI	CCATC	2 cut(s)	540, 544
BciT130I	CCWGG	2 cut(s)	442, 501
BcoDI	GTCTC	3 cut(s)	240, 280, 485
BfaI	CTAG	2 cut(s)	219, 434
BisI	GCNGC	3 cut(s)	215, 315, 474
BlsI	GCNGC	3 cut(s)	216, 316, 475
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	442, 501
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	442, 501
BmsI	GCATC	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	2 cut(s)	441, 499
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 334
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	442, 501
BseDI	CCNNGG	2 cut(s)	441, 499
BseGI	GGATG	1 cut(s)	555
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	100, 334
BseMII	CTCAG	2 cut(s)	30, 346
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	83, 209
BseXI	GCAGC	3 cut(s)	201, 301, 460
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	2 cut(s)	275, 477
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	100, 334
BsmAI	GTCTC	3 cut(s)	240, 280, 485
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	158, 471
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	31, 345
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	279
BspOI	GCTAGC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	441, 499
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	442, 501
Bst4CI	ACNGT	2 cut(s)	264, 381
Bst6I	CTCTTC	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	410, 435
BstDEI	CTNAG	2 cut(s)	39, 332
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	3 cut(s)	240, 280, 485
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 409
BstNI	CCWGG	2 cut(s)	442, 501
BstSCI	CCNGG	2 cut(s)	440, 499
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	201, 301, 460
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	2 cut(s)	410, 435
CaiI	CAGNNNCTG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	9 cut(s)	45, 126, 214, 299, 338, 433, 437, 455, 504
CviKI_1	RGCY	9 cut(s)	45, 126, 214, 299, 338, 433, 437, 455, 504
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	39, 332
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DraIII	CACNNNGTG	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	485
Eco32I	GATATC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	440, 499
EcoRV	GATATC	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	1 cut(s)	469
FaiI	YATR	3 cut(s)	357, 365, 467
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	465
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	215, 315, 474
FokI	GGATG	1 cut(s)	562
Fsp4HI	GCNGC	3 cut(s)	215, 315, 474
FspBI	CTAG	2 cut(s)	219, 434
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	3 cut(s)	215, 315, 474
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	275, 477
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	185, 271, 462
HpaII	CCGG	2 cut(s)	275, 477
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	86, 122, 184, 461
Hpy188III	TCNNGA	4 cut(s)	74, 275, 428, 466
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	91, 262, 338
HpyCH4III	ACNGT	2 cut(s)	264, 381
HpyCH4V	TGCA	2 cut(s)	359, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 409
HpyF3I	CTNAG	2 cut(s)	39, 332
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	36
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	400, 430, 532
LpnPI	CCDG	9 cut(s)	288, 296, 319, 333, 427, 454, 486, 490, 513
Lsp1109I	GCAGC	3 cut(s)	201, 301, 460
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	219, 434
MaeIII	GTNAC	3 cut(s)	74, 221, 373
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	5 cut(s)	8, 11, 162, 211, 483
MfeI	CAATTG	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	3 cut(s)	87, 508, 539
MluI	ACGCGT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	104, 116, 187, 221, 261, 344, 363, 506
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	275, 477
MspR9I	CCNGG	2 cut(s)	442, 501
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	2 cut(s)	442, 501
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	42, 409
NdeII	GATC	1 cut(s)	117
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	74, 373
PagI	TCATGA	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	185, 462
PkrI	GCNGC	3 cut(s)	216, 316, 475
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	440, 499
PspGI	CCWGG	2 cut(s)	440, 499
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	3 cut(s)	215, 315, 474
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	442, 501
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	87, 508, 539
SsiI	CCGC	2 cut(s)	158, 471
SspMI	CTAG	2 cut(s)	219, 434
StyD4I	CCNGG	2 cut(s)	440, 499
TaaI	ACNGT	2 cut(s)	264, 381
TaqI	TCGA	2 cut(s)	255, 266
TasI	AATT	3 cut(s)	87, 508, 539
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	185, 462
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TscAI	CASTG	1 cut(s)	386
TseFI	GTSAC	2 cut(s)	74, 373
TseI	GCWGC	3 cut(s)	214, 314, 473
Tsp45I	GTSAC	2 cut(s)	74, 373
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	2 cut(s)	258, 413
TspRI	CASTG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	87, 508
XspI	CTAG	2 cut(s)	219, 434
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.