Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006932.1

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Forward (+)

84 .. 998

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006932.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgtctccctcatcaatggactatatgaatctcaacgcccctcacttcatgcgaaccaccatcatcggcgtcacctacgacggtggcatcgtcctcggcgccgactcccaaacctccactggctgcatattctcaggttgtttccgactatgtgaggcattttcttcatcagcacatggtggtgactgcgctgagagtttgaaggagttcagtgctaataacattagggacaccttcagagttatgcttgagattggtgtggttcttatgttcggaggacaaatgaatattgtcaaggttagatctctcggtgggaagaatggtggattgggtcagacgggcatggcagccctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

118

Amino Acids

12.43

Weight (kDa)

6.03

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	2 cut(s)	69, 99
AdeI	CACNNNGTG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
Alw26I	GTCTC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	123, 347
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	101, 191
AsuHPI	GGTGA	2 cut(s)	64, 194
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	102
BglII	AGATCT	1 cut(s)	302
BisI	GCNGC	2 cut(s)	124, 348
BlsI	GCNGC	2 cut(s)	125, 349
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	69, 99
BsaJI	CCNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	147, 183
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	146, 184
BspLI	GGNNCC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	302
BssNI	GRCGYC	2 cut(s)	69, 99
Bst4CI	ACNGT	1 cut(s)	83
BstACI	GRCGYC	2 cut(s)	69, 99
BstDEI	CTNAG	2 cut(s)	133, 192
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	101, 191
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	117, 217
CfoI	GCGC	2 cut(s)	101, 191
CseI	GACGC	1 cut(s)	58
CviAII	CATG	3 cut(s)	49, 176, 343
CviJI	RGCY	2 cut(s)	123, 350
CviKI_1	RGCY	2 cut(s)	123, 350
DdeI	CTNAG	2 cut(s)	133, 192
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
DraIII	CACNNNGTG	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
FaeI	CATG	3 cut(s)	52, 179, 346
FaiI	YATR	9 cut(s)	24, 26, 50, 128, 151, 177, 245, 269, 344
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	48, 175, 342
Fnu4HI	GCNGC	2 cut(s)	124, 348
Fsp4HI	GCNGC	2 cut(s)	124, 348
GlaI	GCGC	2 cut(s)	100, 190
GluI	GCNGC	2 cut(s)	124, 348
HaeII	RGCGCY	1 cut(s)	102
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	101, 191
Hin1I	GRCGYC	2 cut(s)	69, 99
Hin1II	CATG	3 cut(s)	52, 179, 346
Hin6I	GCGC	2 cut(s)	99, 189
HinP1I	GCGC	2 cut(s)	99, 189
HinfI	GANTC	2 cut(s)	28, 104
HphI	GGTGA	2 cut(s)	64, 194
Hpy188I	TCNGA	5 cut(s)	146, 239, 275, 336, 356
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	196, 244
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	126
HpyF3I	CTNAG	2 cut(s)	133, 192
Hsp92I	GRCGYC	2 cut(s)	69, 99
Hsp92II	CATG	3 cut(s)	52, 179, 346
HspAI	GCGC	2 cut(s)	99, 189
KasI	GGCGCC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	302
LpnPI	CCDG	2 cut(s)	105, 120
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	70, 182
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	2 cut(s)	156, 328
MflI	RGATCY	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	19, 51, 104, 124, 148, 269
MroXI	GAANNNNTTC	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	180
NarI	GGCGCC	1 cut(s)	99
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	52, 179, 346
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	70, 182
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	125, 349
PleI	GAGTC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	180
SatI	GCNGC	2 cut(s)	124, 348
Sau3AI	GATC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	98
SetI	ASST	5 cut(s)	77, 116, 139, 236, 300
SfaNI	GCATC	1 cut(s)	96
SfoI	GGCGCC	1 cut(s)	100
SgeI	CNNG	9 cut(s)	61, 107, 132, 147, 188, 260, 307, 320, 351
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SspDI	GGCGCC	1 cut(s)	98
SspI	AATATT	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	2 cut(s)	124, 217
TseFI	GTSAC	2 cut(s)	70, 182
TseI	GCWGC	2 cut(s)	123, 347
Tsp45I	GTSAC	2 cut(s)	70, 182
TspDTI	ATGAA	4 cut(s)	37, 41, 156, 299
TspRI	CASTG	2 cut(s)	124, 217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.