Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Reverse (-)

28603177 .. 28603494

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1198700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTCTCCGCTTTCTTCAAAAATTGTGCTTGCACCATCCCTGTCCGAGTCGAACCAGACAAGAGCAGCGCTCTGATTCCCACCAAATCCGGCTTCGTTCAAGATCAGTCTCTCTTACCCTCTTCCAGAACTCACCAACCCGCTCTGCCCATCAAGTTCGTCCGCCCAATCGTCGCAGTCCACGCCGCCGAGCCAGCCAAGAACCCAGTTGTCTCCGATAAGCCGCCGAAGCAGCAGGCTGTTCAGACGGCTTCTTCTTCTTCTTCTTTGGCGACGAATCACAATGCAGTTCCGGCGAAATGGAGCTTGGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

106

Amino Acids

11.2

Weight (kDa)

9.63

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	5 cut(s)	9, 141, 163, 186, 224
AfeI	AGCGCT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	19, 101
AjuI	GAANNNNNNNTTGG	3 cut(s)	77, 109, 290
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	114, 217, 305
Aor51HI	AGCGCT	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	66, 232
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	78, 244
BccI	CCATC	2 cut(s)	44, 158
BceAI	ACGGC	1 cut(s)	264
BcoDI	GTCTC	3 cut(s)	114, 217, 305
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	4 cut(s)	67, 186, 224, 233
BlsI	GCNGC	4 cut(s)	68, 187, 225, 234
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
Bse1I	ACTGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	78, 244
BsiSI	CCGG	2 cut(s)	90, 293
BsmAI	GTCTC	3 cut(s)	114, 217, 305
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	5 cut(s)	9, 141, 163, 186, 224
BsrBI	CCGCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	31, 195, 237
BstF5I	GGATG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	3 cut(s)	114, 217, 305
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 194, 229, 232, 293
BstV1I	GCAGC	2 cut(s)	78, 244
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	31, 195, 237
CfoI	GCGC	1 cut(s)	71
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	7 cut(s)	93, 193, 197, 223, 239, 251, 306
CviKI_1	RGCY	7 cut(s)	93, 193, 197, 223, 239, 251, 306
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	70
FaeI	CATG	1 cut(s)	318
FaiI	YATR	1 cut(s)	316
FatI	CATG	1 cut(s)	314
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	67, 186, 224, 233
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	67, 186, 224, 233
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	67, 186, 224, 233
HaeII	RGCGCY	1 cut(s)	72
HapII	CCGG	2 cut(s)	90, 293
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	3 cut(s)	48, 76, 277
HpaII	CCGG	2 cut(s)	90, 293
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	47, 75, 217, 246
Hpy188III	TCNNGA	2 cut(s)	101, 126
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	176, 277
HpyCH4V	TGCA	2 cut(s)	33, 287
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 194, 229, 232, 293
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	8 cut(s)	54, 69, 103, 139, 207, 219, 221, 306
Lsp1109I	GCAGC	2 cut(s)	78, 244
MalI	GATC	1 cut(s)	105
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	1 cut(s)	103
MboII	GAAGA	6 cut(s)	7, 114, 246, 249, 252, 255
MluCI	AATT	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	1 cut(s)	130
MspI	CCGG	2 cut(s)	90, 293
MwoI	GCNNNNNNNGC	5 cut(s)	182, 194, 229, 232, 293
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	318
NmeAIII	GCCGAG	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	76, 277
PkrI	GCNGC	4 cut(s)	68, 187, 225, 234
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
SatI	GCNGC	4 cut(s)	67, 186, 224, 233
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	57
SetI	ASST	1 cut(s)	308
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	5 cut(s)	9, 141, 163, 186, 224
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	22
TauI	GCSGC	2 cut(s)	188, 226
TfiI	GAWTC	2 cut(s)	76, 277
TseI	GCWGC	2 cut(s)	66, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.