Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Forward (+)

44611807 .. 44612981

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGACGATATGAATCTCAACGCTCCTCACTTCATGGGAACCACCATCATCGGCGTCACCTACGACAGCGTCGTCGTCCTCGGTGCCGACTCCCAAACCTCTACCGAAGGCGGCTGGGGTGGTGATTGCGCTGAGAGCTTGAAGGAGTTCAGTGCCAATAACATTAGGGACACCTTCAGAGTTATGCTTGAGATGGGTGTGGTTCTTATGTTCGGAGGACAAATGAATATTGTCAAGGTTAGTAATGGAGGGACTAGTAGTGTTAAAAAGTTTGAGGGTGTTTGGGTTTACTGGGATTATGCTACCTTATATGTGAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

108

Amino Acids

11.69

Weight (kDa)

4.54

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	40 - 81	1.5e-11	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	142
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	2 cut(s)	138, 320
AluI	AGCT	2 cut(s)	138, 320
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	49, 134
BanI	GGYRCC	1 cut(s)	83
BccI	CCATC	2 cut(s)	53, 187
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	40, 85
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	83
BslFI	GGGAC	2 cut(s)	182, 265
BsmFI	GGGAC	2 cut(s)	182, 265
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	40, 85
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	79
BssNI	GRCGYC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	131
CseI	GACGC	2 cut(s)	43, 58
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	3 cut(s)	114, 138, 320
CviKI_1	RGCY	3 cut(s)	114, 138, 320
DdeI	CTNAG	1 cut(s)	132
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	160
FaeI	CATG	1 cut(s)	37
FaiI	YATR	7 cut(s)	11, 35, 185, 209, 300, 310, 312
FaqI	GGGAC	2 cut(s)	182, 265
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	112
GsaI	CCCAGC	1 cut(s)	118
HgaI	GACGC	2 cut(s)	43, 58
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	13, 89
HphI	GGTGA	2 cut(s)	49, 134
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	179, 215
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	3 cut(s)	101, 136, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	2 cut(s)	100, 277
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	6 cut(s)	36, 89, 109, 209, 242, 268
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	40, 85
NmuCI	GTSAC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	40, 85
PsyI	GACNNNGTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	83
SetI	ASST	7 cut(s)	62, 101, 140, 176, 240, 308, 322
SgeI	CNNG	8 cut(s)	46, 92, 127, 151, 200, 247, 267, 304
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SpeI	ACTAGT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	111
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	255
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	22, 26, 239
TspRI	CASTG	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.