Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Forward (+)

34702249 .. 34702546

Gene Structure 298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGGTAATGCTTTTCTTCTTCAGGGTGGTGACTATGTTGAGAGCTTGAAGGAGTTCAGTGCCAATAACATTAGGGACACCTTCAGAGTTATGCTTGAGATGGGTGTGGTTCTTATGTTCGGAGGACAAATGAATATTGTCAAGGTGGGAAGAATGGTGGATTGGGTCAGACGGGCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

60

Amino Acids

6.89

Weight (kDa)

8.25

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	2 - 52	4.6e-16	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	5, 67
AgsI	TTSAA	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	41
BccI	CCATC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	64
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	1 cut(s)	45
CviKI_1	RGCY	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	5, 67
FaeI	CATG	1 cut(s)	180
FaiI	YATR	4 cut(s)	36, 92, 116, 178
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	176
Hin1II	CATG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	86, 122, 170
HpyAV	CCTTC	2 cut(s)	43, 91
Hsp92II	CATG	1 cut(s)	180
LpnPI	CCDG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	29
MboII	GAAGA	3 cut(s)	8, 11, 162
MnlI	CCTC	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	53
SetI	ASST	3 cut(s)	47, 83, 147
SgeI	CNNG	4 cut(s)	35, 58, 107, 154
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SspI	AATATT	1 cut(s)	136
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.