Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Forward (+)

29187970 .. 29188901

Gene Structure 932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1214500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTTCGTCCGCCCAATCGTCGCAGTCCACGCCGCCGAGCCAGCCAAGAACCCAGTTGTCTCCGATAAGCCGCCGAAGCAGCAGGCTGTTCAGACGGCTTCTTCTTCTTCTTCTTTGGCGACGAATCACAATGCAGTTCCGGCGAAATGGAGCTTGGAGACATGGAAATCTAAGAAGGCGCTGCAATTGCCGGAGTACCCAAATCAGGAAGATCTCCAGTCGGTGCGTCGGACCCTCGATTCGTTCCCGCCTATTGTGTTCGCCGGTGAAGCGAGGAACCTGGAGGAGCGTATCGGAGAGGCCGCCATGGGAAACGCGTTTCTTCTTCAAGGTGGGGACTGCGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATTCGTGACACCTTCAGAATTCTCCTCCAAATGGGCGTCGTTTTGATGATCGGAGGCCAAATGCCCGTCGTCAAGGTGGGAAGAATGGCGGGTCAGTTTGTGAAACCCAGATCGGATTCTTTTGAGGAGAAGAATGGTGTGAAGCTGCCTAGTTACAGAGGGGATAATGTGAACGGAGACGCCTTCGATTTACAGTCGAGGACTCCGGACCCCCAGAGACTGATTAGAGCCTATTGTCAATCTGCTGCTACTCTCAACCTTCTCAGGGCTTTCGCTACTGGAGGTTATGCAGTTATGCAGAGGGTCACACAGTGGAACTTGGATTTCACGGAGCACAGCGAGCAAGGTGATAGATATCGGGAGCTAGCTTCCAGGGTTGATGAGGCTCTCGGATTCATGACCGCTGCCGGTCTCACATTCTCTTCCCTCCCAGGCTCAAATTTGCTATTTTTACTTGGAATGGAGCAACAATTGAGATGGATGGCAGTACTAAAAACCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

293

Amino Acids

32.3

Weight (kDa)

7.76

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	50 - 265	1.5e-86	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	317
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	7 cut(s)	10, 33, 71, 248, 303, 464, 777
AcsI	RAATTY	2 cut(s)	393, 814
AcuI	CTGAAG	1 cut(s)	373
AcyI	GRCGYC	2 cut(s)	411, 555
AdeI	CACNNNGTG	1 cut(s)	687
AfaI	GTAC	2 cut(s)	197, 864
AfiI	CCNNNNNNNGG	3 cut(s)	205, 406, 640
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	329, 355, 364
AjnI	CCWGG	3 cut(s)	279, 746, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	153, 351, 520, 739, 743
AluI	AGCT	5 cut(s)	153, 351, 520, 739, 743
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	5 cut(s)	64, 152, 546, 586, 791
AlwNI	CAGNNNCTG	1 cut(s)	595
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	2 cut(s)	300, 430
ApeKI	GCWGC	5 cut(s)	79, 181, 520, 620, 779
ApoI	RAATTY	2 cut(s)	393, 814
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AspLEI	GCGC	2 cut(s)	181, 344
AspS9I	GGNCC	2 cut(s)	231, 583
AsuHPI	GGTGA	2 cut(s)	278, 734
AsuNHI	GCTAGC	1 cut(s)	739
AvaII	GGWCC	2 cut(s)	231, 583
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	5 cut(s)	91, 168, 507, 607, 766
BccI	CCATC	2 cut(s)	846, 850
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	3 cut(s)	281, 748, 807
BcoDI	GTCTC	5 cut(s)	64, 152, 546, 586, 791
BfaI	CTAG	2 cut(s)	525, 740
BfoI	RGCGCY	1 cut(s)	182
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	8 cut(s)	33, 71, 80, 182, 303, 521, 621, 780
BlsI	GCNGC	8 cut(s)	34, 72, 81, 183, 304, 522, 622, 781
BmcAI	AGTACT	1 cut(s)	864
Bme1390I	CCNGG	3 cut(s)	281, 748, 807
Bme18I	GGWCC	2 cut(s)	231, 583
BmgT120I	GGNCC	2 cut(s)	231, 583
BmiI	GGNNCC	3 cut(s)	233, 278, 585
BmrFI	CCNGG	3 cut(s)	281, 748, 807
BmrI	ACTGGG	1 cut(s)	47
BmtI	GCTAGC	1 cut(s)	743
BmuI	ACTGGG	1 cut(s)	47
BpmI	CTGGAG	3 cut(s)	200, 302, 675
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	2 cut(s)	411, 555
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	3 cut(s)	306, 747, 805
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 406, 640
Bse118I	RCCGGY	2 cut(s)	263, 782
Bse1I	ACTGG	3 cut(s)	53, 217, 658
Bse8I	GATNNNNATC	1 cut(s)	729
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	3 cut(s)	281, 748, 807
BseDI	CCNNGG	3 cut(s)	306, 747, 805
BseGI	GGATG	1 cut(s)	861
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	3 cut(s)	205, 406, 640
BseMII	CTCAG	2 cut(s)	336, 652
BseNI	ACTGG	3 cut(s)	53, 217, 658
BseRI	GAGGAG	3 cut(s)	299, 389, 515
BseXI	GCAGC	5 cut(s)	91, 168, 507, 607, 766
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	302, 432
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	5 cut(s)	140, 191, 264, 581, 783
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	205, 406, 640
BsmAI	GTCTC	5 cut(s)	64, 152, 546, 586, 791
BsmBI	CGTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	302, 432
Bso31I	GGTCTC	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	211, 423, 485
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	7 cut(s)	10, 33, 71, 248, 303, 464, 777
BspANI	GGCC	2 cut(s)	302, 432
BspCNI	CTCAG	2 cut(s)	337, 651
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	233, 278, 585
BspOI	GCTAGC	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	791
BsrFI	RCCGGY	2 cut(s)	263, 782
BsrI	ACTGG	3 cut(s)	53, 217, 658
BssAI	RCCGGY	2 cut(s)	263, 782
BssECI	CCNNGG	3 cut(s)	306, 747, 805
BssMI	GATC	3 cut(s)	211, 423, 485
BssNI	GRCGYC	2 cut(s)	411, 555
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	3 cut(s)	281, 748, 807
Bst4CI	ACNGT	2 cut(s)	570, 687
Bst6I	CTCTTC	1 cut(s)	802
BstACI	GRCGYC	2 cut(s)	411, 555
BstC8I	GCNNGC	4 cut(s)	42, 84, 716, 741
BstDEI	CTNAG	3 cut(s)	171, 345, 638
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	861
BstFNI	CGCG	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	2 cut(s)	181, 344
BstKTI	GATC	3 cut(s)	214, 426, 488
BstMAI	GTCTC	5 cut(s)	64, 152, 546, 586, 791
BstMBI	GATC	3 cut(s)	211, 423, 485
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 41, 76, 79, 140, 187, 269, 348, 715
BstNI	CCWGG	3 cut(s)	281, 748, 807
BstSCI	CCNGG	3 cut(s)	279, 746, 805
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	5 cut(s)	91, 168, 507, 607, 766
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	302, 432
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	861
BtsIMutI	CAGTG	1 cut(s)	692
Cac8I	GCNNGC	4 cut(s)	42, 84, 716, 741
CaiI	CAGNNNCTG	1 cut(s)	595
CciI	TCATGA	1 cut(s)	771
CfoI	GCGC	2 cut(s)	181, 344
Cfr10I	RCCGGY	2 cut(s)	263, 782
Cfr13I	GGNCC	2 cut(s)	231, 583
CseI	GACGC	3 cut(s)	215, 400, 563
Csp6I	GTAC	2 cut(s)	196, 863
CviAII	CATG	3 cut(s)	162, 307, 772
CviQI	GTAC	2 cut(s)	196, 863
DdeI	CTNAG	3 cut(s)	171, 345, 638
DpnI	GATC	3 cut(s)	213, 425, 487
DpnII	GATC	3 cut(s)	211, 423, 485
DraIII	CACNNNGTG	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	802
Eco130I	CCWWGG	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	731
Eco47I	GGWCC	2 cut(s)	231, 583
Eco57I	CTGAAG	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	3 cut(s)	279, 746, 805
EcoRV	GATATC	1 cut(s)	731
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	3 cut(s)	165, 310, 775
FaiI	YATR	5 cut(s)	163, 308, 663, 671, 773
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	3 cut(s)	161, 306, 771
FauI	CCCGC	2 cut(s)	255, 457
Fnu4HI	GCNGC	8 cut(s)	33, 71, 80, 182, 303, 521, 621, 780
FokI	GGATG	1 cut(s)	868
Fsp4HI	GCNGC	8 cut(s)	33, 71, 80, 182, 303, 521, 621, 780
FspBI	CTAG	2 cut(s)	525, 740
GlaI	GCGC	2 cut(s)	180, 343
GluI	GCNGC	8 cut(s)	33, 71, 80, 182, 303, 521, 621, 780
GsuI	CTGGAG	3 cut(s)	200, 302, 675
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	302, 432
HapII	CCGG	5 cut(s)	140, 191, 264, 581, 783
HgaI	GACGC	3 cut(s)	215, 400, 563
HhaI	GCGC	2 cut(s)	181, 344
Hin1I	GRCGYC	2 cut(s)	411, 555
Hin1II	CATG	3 cut(s)	165, 310, 775
Hin6I	GCGC	2 cut(s)	179, 342
HinP1I	GCGC	2 cut(s)	179, 342
HinfI	GANTC	5 cut(s)	124, 239, 491, 577, 768
HpaII	CCGG	5 cut(s)	140, 191, 264, 581, 783
HphI	GGTGA	2 cut(s)	278, 734
Hpy166II	GTNNAC	2 cut(s)	28, 547
Hpy188I	TCNGA	8 cut(s)	64, 93, 231, 296, 392, 428, 490, 767
Hpy188III	TCNNGA	5 cut(s)	206, 380, 581, 734, 772
Hpy8I	GTNNAC	2 cut(s)	28, 547
Hpy99I	CGWCG	5 cut(s)	23, 124, 231, 416, 446
HpyAV	CCTTC	4 cut(s)	169, 397, 568, 644
HpyCH4III	ACNGT	2 cut(s)	570, 687
HpyCH4V	TGCA	4 cut(s)	134, 184, 665, 673
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 41, 76, 79, 140, 187, 269, 348, 715
HpyF3I	CTNAG	3 cut(s)	171, 345, 638
Hsp92I	GRCGYC	2 cut(s)	411, 555
Hsp92II	CATG	3 cut(s)	165, 310, 775
HspAI	GCGC	2 cut(s)	179, 342
Kpn2I	TCCGGA	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	211, 423, 485
LmnI	GCTCC	5 cut(s)	150, 286, 706, 736, 838
Lsp1109I	GCAGC	5 cut(s)	91, 168, 507, 607, 766
MaeI	CTAG	2 cut(s)	525, 740
MaeIII	GTNAC	3 cut(s)	380, 527, 679
MalI	GATC	3 cut(s)	213, 425, 487
MboI	GATC	3 cut(s)	211, 423, 485
MfeI	CAATTG	2 cut(s)	185, 845
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	4 cut(s)	185, 393, 814, 845
MluI	ACGCGT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	580
MseI	TTAA	1 cut(s)	877
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	5 cut(s)	140, 191, 264, 581, 783
MspR9I	CCNGG	3 cut(s)	281, 748, 807
MunI	CAATTG	2 cut(s)	185, 845
MvaI	CCWGG	3 cut(s)	281, 748, 807
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	9 cut(s)	29, 41, 76, 79, 140, 187, 269, 348, 715
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	3 cut(s)	211, 423, 485
NheI	GCTAGC	1 cut(s)	739
NlaIII	CATG	3 cut(s)	165, 310, 775
NlaIV	GGNNCC	3 cut(s)	233, 278, 585
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	380, 679
PagI	TCATGA	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	124, 239, 491, 768
PkrI	GCNGC	8 cut(s)	34, 72, 81, 183, 304, 522, 622, 781
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Psp6I	CCWGG	3 cut(s)	279, 746, 805
PspGI	CCWGG	3 cut(s)	279, 746, 805
PspN4I	GGNNCC	3 cut(s)	233, 278, 585
PspPI	GGNCC	2 cut(s)	231, 583
PstNI	CAGNNNCTG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	197, 864
RsaNI	GTAC	2 cut(s)	196, 863
SaqAI	TTAA	1 cut(s)	877
SatI	GCNGC	8 cut(s)	33, 71, 80, 182, 303, 521, 621, 780
Sau3AI	GATC	3 cut(s)	211, 423, 485
Sau96I	GGNCC	2 cut(s)	231, 583
ScaI	AGTACT	1 cut(s)	864
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	281, 748, 807
SduI	GDGCHC	1 cut(s)	711
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	231, 583
Sse9I	AATT	4 cut(s)	185, 393, 814, 845
SsiI	CCGC	7 cut(s)	10, 33, 71, 248, 303, 464, 777
SspMI	CTAG	2 cut(s)	525, 740
StyD4I	CCNGG	3 cut(s)	279, 746, 805
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	570, 687
TaqI	TCGA	3 cut(s)	237, 561, 572
TasI	AATT	4 cut(s)	185, 393, 814, 845
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	3 cut(s)	35, 73, 305
TfiI	GAWTC	4 cut(s)	124, 239, 491, 768
Tru1I	TTAA	1 cut(s)	877
Tru9I	TTAA	1 cut(s)	877
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	2 cut(s)	380, 679
TseI	GCWGC	5 cut(s)	79, 181, 520, 620, 779
Tsp45I	GTSAC	2 cut(s)	380, 679
TspDTI	ATGAA	1 cut(s)	760
TspGWI	ACGGA	2 cut(s)	564, 719
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	231, 583
XapI	RAATTY	2 cut(s)	393, 814
XspI	CTAG	2 cut(s)	525, 740
ZrmI	AGTACT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.