Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Forward (+)

29419371 .. 29420401

Gene Structure 1031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1151000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTCTCCGCTTCTTCAAAAATTGTGCTTGCACCATCCCTGTCCGAAACTCACCAACCCGCTCTGCCCATTAAGTTCGTCCGCCCAATCGTCGCAGTCCACGCCGCCGAGCCAGCCAAGAACCCAGTTGTCTCTGATAAGCCGTCGAAGCAGCAGGCTGTTCAGACGGCTTCTTCTTCTTCTTCTTTGGCGACGAATCACAATGCAGTTCCGGCGAAATGGAGCTTGGAGACATGGAAATCTAAGAAGGCGCTGCAATTGCCGGAGTACCCAAATCAGGAAGATCTCCATTCGGTGCTTCGGACCCTCGATTCGTTCCCGCCTATTGTGTTCGCCGGTGAAGCGAGGAACCTGGAGGAGCGTATCGGAGAGGCCGCCATGGGAAACGCGTTTCTTCTTCAAGGTGGGGACTGCGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATTCGTGACACCTTCAGAATTCTCCTCCAAATGGGCGTCGTTTTGATGATCGGAGGCCAAATGCCCGTCGTCAAGGTGGGAAGAATGGCGGGTCAGTTTGTGAAACCCAGATCGGATTCTTTTGAGGAGAAGAATGGTGTGAAGCTGCCTAGTTACAGAGGGGATAATGTGAACGGAGACGCCTTCGATTTACAGTCAAGGACTCCGGACCCCCAGAGACTGATTAGAGCCTATTGTCAATTTGCTGCTACTCTCAACCTTCTCAGGGCTTTCGCTACTGGAGGTTATGCAGTTATGCAGAGGGTCACACAGTGGAACTTGGATTTCACGGAGCACAGCGAGCAAGGTGATAGATATCGGGAGCTAGCTTCCAGGGTTGATGAGGCTCTCGGATTCATGACCGCTGCCGGTCTCACATTCTCTTCCCTCCCAGGCTCAAATTTGCTGTTTTTACTTGGAATGGAGCAACAATTGAGATGGATGGCAGTACTGAAAACCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

317

Amino Acids

34.79

Weight (kDa)

7.78

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	74 - 289	4.4e-85	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	652
AciI	CCGC	8 cut(s)	9, 60, 82, 105, 320, 375, 536, 849
AcsI	RAATTY	2 cut(s)	465, 886
AcuI	CTGAAG	1 cut(s)	445
AcyI	GRCGYC	2 cut(s)	483, 627
AdeI	CACNNNGTG	1 cut(s)	759
AfaI	GTAC	2 cut(s)	269, 936
AfiI	CCNNNNNNNGG	3 cut(s)	277, 478, 712
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	18, 401, 427, 436
AjnI	CCWGG	3 cut(s)	351, 818, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	5 cut(s)	225, 423, 592, 811, 815
AluI	AGCT	5 cut(s)	225, 423, 592, 811, 815
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	5 cut(s)	136, 224, 618, 658, 863
AlwNI	CAGNNNCTG	1 cut(s)	667
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	2 cut(s)	372, 502
ApeKI	GCWGC	5 cut(s)	151, 253, 592, 692, 851
ApoI	RAATTY	2 cut(s)	465, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AspLEI	GCGC	2 cut(s)	253, 416
AspS9I	GGNCC	2 cut(s)	303, 655
AsuHPI	GGTGA	3 cut(s)	44, 350, 806
AsuNHI	GCTAGC	1 cut(s)	811
AvaII	GGWCC	2 cut(s)	303, 655
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	5 cut(s)	163, 240, 579, 679, 838
BccI	CCATC	3 cut(s)	43, 918, 922
BceAI	ACGGC	2 cut(s)	127, 183
BciT130I	CCWGG	3 cut(s)	353, 820, 879
BcoDI	GTCTC	5 cut(s)	136, 224, 618, 658, 863
BfaI	CTAG	2 cut(s)	597, 812
BfoI	RGCGCY	1 cut(s)	254
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	7 cut(s)	105, 152, 254, 375, 593, 693, 852
BlsI	GCNGC	7 cut(s)	106, 153, 255, 376, 594, 694, 853
BmcAI	AGTACT	1 cut(s)	936
Bme1390I	CCNGG	3 cut(s)	353, 820, 879
Bme18I	GGWCC	2 cut(s)	303, 655
BmgT120I	GGNCC	2 cut(s)	303, 655
BmiI	GGNNCC	3 cut(s)	305, 350, 657
BmrFI	CCNGG	3 cut(s)	353, 820, 879
BmrI	ACTGGG	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	815
BmuI	ACTGGG	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	374, 747
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	2 cut(s)	483, 627
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	378, 819, 877
BsaWI	WCCGGW	1 cut(s)	652
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 478, 712
Bse118I	RCCGGY	2 cut(s)	335, 854
Bse1I	ACTGG	2 cut(s)	125, 730
Bse8I	GATNNNNATC	1 cut(s)	801
BseAI	TCCGGA	1 cut(s)	652
BseBI	CCWGG	3 cut(s)	353, 820, 879
BseDI	CCNNGG	3 cut(s)	378, 819, 877
BseGI	GGATG	2 cut(s)	35, 933
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	3 cut(s)	277, 478, 712
BseMII	CTCAG	2 cut(s)	408, 724
BseNI	ACTGG	2 cut(s)	125, 730
BseRI	GAGGAG	3 cut(s)	371, 461, 587
BseXI	GCAGC	5 cut(s)	163, 240, 579, 679, 838
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	374, 504
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	5 cut(s)	212, 263, 336, 653, 855
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	277, 478, 712
BsmAI	GTCTC	5 cut(s)	136, 224, 618, 658, 863
BsmBI	CGTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	374, 504
Bso31I	GGTCTC	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp13I	TCCGGA	1 cut(s)	652
Bsp143I	GATC	3 cut(s)	283, 495, 557
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	8 cut(s)	9, 60, 82, 105, 320, 375, 536, 849
BspANI	GGCC	2 cut(s)	374, 504
BspCNI	CTCAG	2 cut(s)	409, 723
BspEI	TCCGGA	1 cut(s)	652
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	843
BspLI	GGNNCC	3 cut(s)	305, 350, 657
BspOI	GCTAGC	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	863
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	335, 854
BsrI	ACTGG	2 cut(s)	125, 730
BssAI	RCCGGY	2 cut(s)	335, 854
BssECI	CCNNGG	3 cut(s)	378, 819, 877
BssMI	GATC	3 cut(s)	283, 495, 557
BssNI	GRCGYC	2 cut(s)	483, 627
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	3 cut(s)	353, 820, 879
Bst4CI	ACNGT	2 cut(s)	642, 759
Bst6I	CTCTTC	1 cut(s)	874
BstACI	GRCGYC	2 cut(s)	483, 627
BstC8I	GCNNGC	5 cut(s)	30, 114, 156, 788, 813
BstDEI	CTNAG	3 cut(s)	243, 417, 710
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	35, 933
BstFNI	CGCG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 416
BstKTI	GATC	3 cut(s)	286, 498, 560
BstMAI	GTCTC	5 cut(s)	136, 224, 618, 658, 863
BstMBI	GATC	3 cut(s)	283, 495, 557
BstMWI	GCNNNNNNNGC	8 cut(s)	101, 113, 148, 212, 259, 341, 420, 787
BstNI	CCWGG	3 cut(s)	353, 820, 879
BstSCI	CCNGG	3 cut(s)	351, 818, 877
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	5 cut(s)	163, 240, 579, 679, 838
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	374, 504
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	35, 933
BtsIMutI	CAGTG	1 cut(s)	764
Cac8I	GCNNGC	5 cut(s)	30, 114, 156, 788, 813
CaiI	CAGNNNCTG	1 cut(s)	667
CciI	TCATGA	1 cut(s)	843
CfoI	GCGC	2 cut(s)	253, 416
Cfr10I	RCCGGY	2 cut(s)	335, 854
Cfr13I	GGNCC	2 cut(s)	303, 655
CseI	GACGC	2 cut(s)	472, 635
Csp6I	GTAC	2 cut(s)	268, 935
CviAII	CATG	3 cut(s)	234, 379, 844
CviQI	GTAC	2 cut(s)	268, 935
DdeI	CTNAG	3 cut(s)	243, 417, 710
DpnI	GATC	3 cut(s)	285, 497, 559
DpnII	GATC	3 cut(s)	283, 495, 557
DraIII	CACNNNGTG	1 cut(s)	759
Eam1104I	CTCTTC	1 cut(s)	874
EarI	CTCTTC	1 cut(s)	874
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	803
Eco47I	GGWCC	2 cut(s)	303, 655
Eco57I	CTGAAG	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	3 cut(s)	351, 818, 877
EcoRV	GATATC	1 cut(s)	803
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	618
FaeI	CATG	3 cut(s)	237, 382, 847
FaiI	YATR	5 cut(s)	235, 380, 735, 743, 845
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	3 cut(s)	233, 378, 843
FauI	CCCGC	3 cut(s)	67, 327, 529
Fnu4HI	GCNGC	7 cut(s)	105, 152, 254, 375, 593, 693, 852
FokI	GGATG	2 cut(s)	22, 940
Fsp4HI	GCNGC	7 cut(s)	105, 152, 254, 375, 593, 693, 852
FspBI	CTAG	2 cut(s)	597, 812
GlaI	GCGC	2 cut(s)	252, 415
GluI	GCNGC	7 cut(s)	105, 152, 254, 375, 593, 693, 852
GsuI	CTGGAG	2 cut(s)	374, 747
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	374, 504
HapII	CCGG	5 cut(s)	212, 263, 336, 653, 855
HgaI	GACGC	2 cut(s)	472, 635
HhaI	GCGC	2 cut(s)	253, 416
Hin1I	GRCGYC	2 cut(s)	483, 627
Hin1II	CATG	3 cut(s)	237, 382, 847
Hin6I	GCGC	2 cut(s)	251, 414
HinP1I	GCGC	2 cut(s)	251, 414
HinfI	GANTC	5 cut(s)	196, 311, 563, 649, 840
HpaII	CCGG	5 cut(s)	212, 263, 336, 653, 855
HphI	GGTGA	3 cut(s)	44, 350, 806
Hpy166II	GTNNAC	2 cut(s)	100, 619
Hpy188I	TCNGA	9 cut(s)	46, 136, 165, 303, 368, 464, 500, 562, 839
Hpy188III	TCNNGA	5 cut(s)	278, 452, 653, 806, 844
Hpy8I	GTNNAC	2 cut(s)	100, 619
Hpy99I	CGWCG	5 cut(s)	95, 148, 196, 488, 518
HpyAV	CCTTC	4 cut(s)	241, 469, 640, 716
HpyCH4III	ACNGT	2 cut(s)	642, 759
HpyCH4V	TGCA	5 cut(s)	32, 206, 256, 737, 745
HpyF10VI	GCNNNNNNNGC	8 cut(s)	101, 113, 148, 212, 259, 341, 420, 787
HpyF3I	CTNAG	3 cut(s)	243, 417, 710
Hsp92I	GRCGYC	2 cut(s)	483, 627
Hsp92II	CATG	3 cut(s)	237, 382, 847
HspAI	GCGC	2 cut(s)	251, 414
Kpn2I	TCCGGA	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	283, 495, 557
LmnI	GCTCC	5 cut(s)	222, 358, 778, 808, 910
Lsp1109I	GCAGC	5 cut(s)	163, 240, 579, 679, 838
MaeI	CTAG	2 cut(s)	597, 812
MaeIII	GTNAC	3 cut(s)	452, 599, 751
MalI	GATC	3 cut(s)	285, 497, 559
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	3 cut(s)	283, 495, 557
MfeI	CAATTG	2 cut(s)	257, 917
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	6 cut(s)	21, 257, 465, 686, 886, 917
MluI	ACGCGT	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	643
MroI	TCCGGA	1 cut(s)	652
MseI	TTAA	2 cut(s)	72, 949
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	5 cut(s)	212, 263, 336, 653, 855
MspR9I	CCNGG	3 cut(s)	353, 820, 879
MunI	CAATTG	2 cut(s)	257, 917
MvaI	CCWGG	3 cut(s)	353, 820, 879
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	8 cut(s)	101, 113, 148, 212, 259, 341, 420, 787
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	3 cut(s)	283, 495, 557
NheI	GCTAGC	1 cut(s)	811
NlaIII	CATG	3 cut(s)	237, 382, 847
NlaIV	GGNNCC	3 cut(s)	305, 350, 657
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	452, 751
PagI	TCATGA	1 cut(s)	843
PfeI	GAWTC	4 cut(s)	196, 311, 563, 840
PkrI	GCNGC	7 cut(s)	106, 153, 255, 376, 594, 694, 853
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	351, 818, 877
PspGI	CCWGG	3 cut(s)	351, 818, 877
PspN4I	GGNNCC	3 cut(s)	305, 350, 657
PspPI	GGNCC	2 cut(s)	303, 655
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	2 cut(s)	269, 936
RsaNI	GTAC	2 cut(s)	268, 935
SaqAI	TTAA	2 cut(s)	72, 949
SatI	GCNGC	7 cut(s)	105, 152, 254, 375, 593, 693, 852
Sau3AI	GATC	3 cut(s)	283, 495, 557
Sau96I	GGNCC	2 cut(s)	303, 655
ScaI	AGTACT	1 cut(s)	936
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	3 cut(s)	353, 820, 879
SduI	GDGCHC	1 cut(s)	783
SgrAI	CRCCGGYG	1 cut(s)	335
SinI	GGWCC	2 cut(s)	303, 655
Sse9I	AATT	6 cut(s)	21, 257, 465, 686, 886, 917
SsiI	CCGC	8 cut(s)	9, 60, 82, 105, 320, 375, 536, 849
SspMI	CTAG	2 cut(s)	597, 812
StyD4I	CCNGG	3 cut(s)	351, 818, 877
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	642, 759
TaqI	TCGA	3 cut(s)	146, 309, 633
TasI	AATT	6 cut(s)	21, 257, 465, 686, 886, 917
TatI	WGTACW	1 cut(s)	934
TauI	GCSGC	2 cut(s)	107, 377
TfiI	GAWTC	4 cut(s)	196, 311, 563, 840
Tru1I	TTAA	2 cut(s)	72, 949
Tru9I	TTAA	2 cut(s)	72, 949
TscAI	CASTG	1 cut(s)	764
TseFI	GTSAC	2 cut(s)	452, 751
TseI	GCWGC	5 cut(s)	151, 253, 592, 692, 851
Tsp45I	GTSAC	2 cut(s)	452, 751
TspDTI	ATGAA	1 cut(s)	832
TspGWI	ACGGA	2 cut(s)	636, 791
TspRI	CASTG	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	303, 655
XapI	RAATTY	2 cut(s)	465, 886
XspI	CTAG	2 cut(s)	597, 812
ZrmI	AGTACT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.