Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Reverse (-)

21687265 .. 21693362

Gene Structure 6098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGGTAATGCTTTTCTTCTTCGGGGTGGTGACTGCACTAAGAGCTTGAAGGACCTAAACCCTAATAACATTAGGGACACCTTCAGAGTTATGCTTGAGATGGGTGTGGTTCTTATGTTCGGAGGACAAATGAATATTGTCAAGAAATTACCACGGAATAATAATAAGTTTGAGGGTGTTTGGGTTTACTGGGATTATGCTACCTTACATGTGAGAGCTTTACCTTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

77

Amino Acids

8.89

Weight (kDa)

9.58

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	2 - 48	1.4e-12	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	2 cut(s)	45, 218
AluI	AGCT	2 cut(s)	45, 218
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	52
BccI	CCATC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	2 cut(s)	45, 218
CviKI_1	RGCY	2 cut(s)	45, 218
DdeI	CTNAG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	52
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	92, 116, 198, 210
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	86, 122
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	43, 91
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	212
LpnPI	CCDG	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	8, 11
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	2 cut(s)	116, 166
MwoI	GCNNNNNNNGC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	212
PciI	ACATGT	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	52
PscI	ACATGT	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	52
SetI	ASST	6 cut(s)	47, 57, 83, 206, 220, 226
SgeI	CNNG	7 cut(s)	35, 58, 107, 154, 165, 202, 221
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	146
SspI	AATATT	1 cut(s)	136
TasI	AATT	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	52
XceI	RCATGY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.