The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33510 |
| malus_domestica | MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1 |
| prunus_persica | Prupe.6G191200_v2.0.a1 |
| pyrus_communis | pycom08g16040 pycom15g28280 |
| rosa_chinensis | RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991 |
| rosa_laevigata | RLG00000001907 RLG00000019004 |
| rosa_multiflora | Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018 |
| rosa_roxburghii | Rroxscaffold_3G00234980 |
| rosa_samantha | Rh7AG367000 Rh7DG360900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 71 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AciI | CCGC | 1 cut(s) | 69 |
| AcuI | CTGAAG | 1 cut(s) | 354 |
| AcyI | GRCGYC | 3 cut(s) | 54, 72, 84 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 365 |
| AflIII | ACRYGT | 1 cut(s) | 400 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 289, 321 |
| AluBI | AGCT | 4 cut(s) | 187, 196, 343, 410 |
| AluI | AGCT | 4 cut(s) | 187, 196, 343, 410 |
| ApeKI | GCWGC | 4 cut(s) | 124, 193, 215, 325 |
| AspLEI | GCGC | 1 cut(s) | 86 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BbvI | GCAGC | 4 cut(s) | 111, 202, 205, 337 |
| BccI | CCATC | 1 cut(s) | 238 |
| BceAI | ACGGC | 1 cut(s) | 82 |
| BfaI | CTAG | 1 cut(s) | 188 |
| BfmI | CTRYAG | 1 cut(s) | 175 |
| BfoI | RGCGCY | 1 cut(s) | 87 |
| BisI | GCNGC | 5 cut(s) | 70, 125, 194, 216, 326 |
| BlsI | GCNGC | 5 cut(s) | 71, 126, 195, 217, 327 |
| BmiI | GGNNCC | 2 cut(s) | 40, 85 |
| BmrI | ACTGGG | 1 cut(s) | 391 |
| BmuI | ACTGGG | 1 cut(s) | 391 |
| BpuEI | CTTGAG | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 3 cut(s) | 54, 72, 84 |
| BsaJI | CCNNGG | 1 cut(s) | 79 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 365 |
| Bse1I | ACTGG | 1 cut(s) | 386 |
| BseDI | CCNNGG | 1 cut(s) | 79 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 365 |
| BseMII | CTCAG | 1 cut(s) | 148 |
| BseNI | ACTGG | 1 cut(s) | 386 |
| BseXI | GCAGC | 4 cut(s) | 111, 202, 205, 337 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 365 |
| BsmI | GAATGC | 1 cut(s) | 180 |
| Bsp143I | GATC | 1 cut(s) | 337 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspCNI | CTCAG | 1 cut(s) | 147 |
| BspLI | GGNNCC | 2 cut(s) | 40, 85 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BsrI | ACTGG | 1 cut(s) | 386 |
| BssECI | CCNNGG | 1 cut(s) | 79 |
| BssMI | GATC | 1 cut(s) | 337 |
| BssNI | GRCGYC | 3 cut(s) | 54, 72, 84 |
| Bst4CI | ACNGT | 1 cut(s) | 205 |
| BstACI | GRCGYC | 3 cut(s) | 54, 72, 84 |
| BstC8I | GCNNGC | 2 cut(s) | 122, 198 |
| BstDEI | CTNAG | 1 cut(s) | 134 |
| BstH2I | RGCGCY | 1 cut(s) | 87 |
| BstHHI | GCGC | 1 cut(s) | 86 |
| BstKTI | GATC | 1 cut(s) | 340 |
| BstMBI | GATC | 1 cut(s) | 337 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 193 |
| BstNSI | RCATGY | 1 cut(s) | 404 |
| BstSFI | CTRYAG | 1 cut(s) | 175 |
| BstV1I | GCAGC | 4 cut(s) | 111, 202, 205, 337 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 2 cut(s) | 122, 198 |
| CfoI | GCGC | 1 cut(s) | 86 |
| CseI | GACGC | 2 cut(s) | 43, 61 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 91, 126 |
| CviAII | CATG | 3 cut(s) | 34, 321, 401 |
| CviJI | RGCY | 6 cut(s) | 124, 187, 196, 328, 343, 410 |
| CviKI_1 | RGCY | 6 cut(s) | 124, 187, 196, 328, 343, 410 |
| DdeI | CTNAG | 1 cut(s) | 134 |
| DinI | GGCGCC | 1 cut(s) | 85 |
| DpnI | GATC | 1 cut(s) | 339 |
| DpnII | GATC | 1 cut(s) | 337 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 71 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 71 |
| Eco57I | CTGAAG | 1 cut(s) | 354 |
| EcoT22I | ATGCAT | 1 cut(s) | 153 |
| EgeI | GGCGCC | 1 cut(s) | 85 |
| EheI | GGCGCC | 1 cut(s) | 85 |
| FaeI | CATG | 3 cut(s) | 37, 324, 404 |
| FaiI | YATR | 9 cut(s) | 9, 11, 35, 177, 236, 260, 322, 390, 402 |
| FatI | CATG | 3 cut(s) | 33, 320, 400 |
| Fnu4HI | GCNGC | 5 cut(s) | 70, 125, 194, 216, 326 |
| Fsp4HI | GCNGC | 5 cut(s) | 70, 125, 194, 216, 326 |
| FspBI | CTAG | 1 cut(s) | 188 |
| GlaI | GCGC | 1 cut(s) | 85 |
| GluI | GCNGC | 5 cut(s) | 70, 125, 194, 216, 326 |
| HaeII | RGCGCY | 1 cut(s) | 87 |
| HgaI | GACGC | 2 cut(s) | 43, 61 |
| HhaI | GCGC | 1 cut(s) | 86 |
| Hin1I | GRCGYC | 3 cut(s) | 54, 72, 84 |
| Hin1II | CATG | 3 cut(s) | 37, 324, 404 |
| Hin6I | GCGC | 1 cut(s) | 84 |
| HinP1I | GCGC | 1 cut(s) | 84 |
| HinfI | GANTC | 2 cut(s) | 13, 89 |
| Hpy166II | GTNNAC | 1 cut(s) | 379 |
| Hpy188I | TCNGA | 3 cut(s) | 266, 314, 334 |
| Hpy8I | GTNNAC | 1 cut(s) | 379 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 77 |
| HpyCH4III | ACNGT | 1 cut(s) | 205 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 120, 151 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 193 |
| HpyF3I | CTNAG | 1 cut(s) | 134 |
| Hsp92I | GRCGYC | 3 cut(s) | 54, 72, 84 |
| Hsp92II | CATG | 3 cut(s) | 37, 324, 404 |
| HspAI | GCGC | 1 cut(s) | 84 |
| KasI | GGCGCC | 1 cut(s) | 83 |
| Kzo9I | GATC | 1 cut(s) | 337 |
| LpnPI | CCDG | 2 cut(s) | 106, 367 |
| Lsp1109I | GCAGC | 4 cut(s) | 111, 202, 205, 337 |
| MaeI | CTAG | 1 cut(s) | 188 |
| MaeIII | GTNAC | 2 cut(s) | 55, 352 |
| MalI | GATC | 1 cut(s) | 339 |
| MboI | GATC | 1 cut(s) | 337 |
| MboII | GAAGA | 2 cut(s) | 306, 347 |
| MluCI | AATT | 2 cut(s) | 114, 156 |
| Mly113I | GGCGCC | 1 cut(s) | 84 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| MmeI | TCCRAC | 1 cut(s) | 244 |
| MnlI | CCTC | 7 cut(s) | 36, 89, 109, 260, 295, 340, 358 |
| Mph1103I | ATGCAT | 1 cut(s) | 153 |
| MseI | TTAA | 2 cut(s) | 146, 155 |
| Mva1269I | GAATGC | 1 cut(s) | 180 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 193 |
| NarI | GGCGCC | 1 cut(s) | 84 |
| NdeII | GATC | 1 cut(s) | 337 |
| NlaIII | CATG | 3 cut(s) | 37, 324, 404 |
| NlaIV | GGNNCC | 2 cut(s) | 40, 85 |
| NmeAIII | GCCGAG | 1 cut(s) | 60 |
| NmuCI | GTSAC | 2 cut(s) | 55, 352 |
| NsiI | ATGCAT | 1 cut(s) | 153 |
| NspI | RCATGY | 1 cut(s) | 404 |
| PciI | ACATGT | 1 cut(s) | 400 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 69, 72 |
| PctI | GAATGC | 1 cut(s) | 180 |
| PfeI | GAWTC | 1 cut(s) | 13 |
| PkrI | GCNGC | 5 cut(s) | 71, 126, 195, 217, 327 |
| PleI | GAGTC | 1 cut(s) | 83 |
| PluTI | GGCGCC | 1 cut(s) | 87 |
| PpsI | GAGTC | 1 cut(s) | 83 |
| PscI | ACATGT | 1 cut(s) | 400 |
| PspN4I | GGNNCC | 2 cut(s) | 40, 85 |
| SaqAI | TTAA | 2 cut(s) | 146, 155 |
| SatI | GCNGC | 5 cut(s) | 70, 125, 194, 216, 326 |
| Sau3AI | GATC | 1 cut(s) | 337 |
| SchI | GAGTC | 1 cut(s) | 83 |
| SetI | ASST | 7 cut(s) | 101, 189, 198, 291, 345, 398, 412 |
| SfcI | CTRYAG | 1 cut(s) | 175 |
| SfoI | GGCGCC | 1 cut(s) | 85 |
| SmlI | CTYRAG | 1 cut(s) | 239 |
| SmoI | CTYRAG | 1 cut(s) | 239 |
| Sse9I | AATT | 2 cut(s) | 114, 156 |
| SsiI | CCGC | 1 cut(s) | 69 |
| SspDI | GGCGCC | 1 cut(s) | 83 |
| SspI | AATATT | 1 cut(s) | 280 |
| SspMI | CTAG | 1 cut(s) | 188 |
| TaaI | ACNGT | 1 cut(s) | 205 |
| TasI | AATT | 2 cut(s) | 114, 156 |
| TauI | GCSGC | 1 cut(s) | 72 |
| TfiI | GAWTC | 1 cut(s) | 13 |
| Tru1I | TTAA | 2 cut(s) | 146, 155 |
| Tru9I | TTAA | 2 cut(s) | 146, 155 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 2 cut(s) | 55, 352 |
| TseI | GCWGC | 4 cut(s) | 124, 193, 215, 325 |
| Tsp45I | GTSAC | 2 cut(s) | 55, 352 |
| TspDTI | ATGAA | 3 cut(s) | 22, 26, 290 |
| TspRI | CASTG | 1 cut(s) | 109 |
| XceI | RCATGY | 1 cut(s) | 404 |
| XspI | CTAG | 1 cut(s) | 188 |
| Zsp2I | ATGCAT | 1 cut(s) | 153 |