Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007109.1

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Reverse (-)

46658 .. 50557

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007109.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgggtactccttttcttcttcagggtggtgactacgctgagagcttgaaggagttcagtgccaataacattagggacaccttcaaagttatgcttgagatgggtgtggttcttatgttcggaggacaaatgaatattgtcaaggttagatctcttgacgggcatggcagccctctgaagatcagttcttgtctgtcataccagtttggatgttgtggtcttcatgtgcactttcatcttcaggttagtaatggaagcactagtagtgttaaaagggaggaagagaaagtagaagaagtacctgaaataacccatagagtatacctggatattgatattgaggaacagcgcttaggtagaattgtgattggattatatggtcaggttgtaccaaaaattgttggacggatcacaaggtttcatgagctcattggagctatgaatgtcgctgaaaagcatgacaacatccttgtgaagaactataattcgagatccttagaaatagtgcatattccggaatccaattatagtcgcgcccctaagagaatgcgccaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

186

Amino Acids

21.03

Weight (kDa)

7.1

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	514
AclWI	GGATC	2 cut(s)	416, 486
AcuI	CTGAAG	3 cut(s)	5, 197, 224
AfaI	GTAC	3 cut(s)	7, 300, 390
AfeI	AGCGCT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	49, 85
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	45, 427, 437
AluI	AGCT	3 cut(s)	45, 427, 437
Alw21I	GWGCWC	2 cut(s)	231, 429
Alw44I	GTGCAC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	416, 486
Aor13HI	TCCGGA	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	350
ApaLI	GTGCAC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	3 cut(s)	351, 536, 552
AsuHPI	GGTGA	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	231, 429
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	326
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	352
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	202
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	215, 465
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	534
BsiHKAI	GWGCWC	2 cut(s)	231, 429
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	231, 429
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	149, 180, 408, 491
BspCNI	CTCAG	1 cut(s)	31
BspEI	TCCGGA	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	421
BspPI	GGATC	2 cut(s)	416, 486
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	4 cut(s)	149, 180, 408, 491
BssNAI	GTATAC	1 cut(s)	322
Bst1107I	GTATAC	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	39, 352, 496, 540
BstF5I	GGATG	2 cut(s)	215, 465
BstFNI	CGCG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	3 cut(s)	351, 536, 552
BstKTI	GATC	4 cut(s)	152, 183, 411, 494
BstMBI	GATC	4 cut(s)	149, 180, 408, 491
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	231
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	149, 491
BstYI	RGATCY	2 cut(s)	149, 491
BstZ17I	GTATAC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	215, 465
BtsIMutI	CAGTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	3 cut(s)	351, 536, 552
Csp6I	GTAC	3 cut(s)	6, 299, 389
CviAII	CATG	4 cut(s)	164, 224, 422, 458
CviJI	RGCY	4 cut(s)	45, 171, 427, 437
CviKI_1	RGCY	4 cut(s)	45, 171, 427, 437
CviQI	GTAC	3 cut(s)	6, 299, 389
DdeI	CTNAG	4 cut(s)	39, 352, 496, 540
DpnI	GATC	4 cut(s)	151, 182, 410, 493
DpnII	GATC	4 cut(s)	149, 180, 408, 491
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	429
Eco47III	AGCGCT	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	3 cut(s)	5, 197, 224
EcoICRI	GAGCTC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	4 cut(s)	167, 227, 425, 461
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	163, 223, 421, 457
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	222, 452
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	3 cut(s)	350, 535, 551
GluI	GCNGC	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	352
HapII	CCGG	1 cut(s)	515
HhaI	GCGC	3 cut(s)	351, 536, 552
Hin1II	CATG	4 cut(s)	167, 227, 425, 461
Hin6I	GCGC	3 cut(s)	349, 534, 550
HinP1I	GCGC	3 cut(s)	349, 534, 550
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	229, 322
Hpy188I	TCNGA	2 cut(s)	122, 177
Hpy188III	TCNNGA	4 cut(s)	155, 422, 489, 515
Hpy8I	GTNNAC	2 cut(s)	229, 322
HpyAV	CCTTC	2 cut(s)	43, 91
HpyCH4V	TGCA	2 cut(s)	229, 508
HpyF3I	CTNAG	4 cut(s)	39, 352, 496, 540
Hsp92II	CATG	4 cut(s)	167, 227, 425, 461
HspAI	GCGC	3 cut(s)	349, 534, 550
Kpn2I	TCCGGA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	149, 180, 408, 491
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	8 cut(s)	8, 215, 227, 311, 315, 338, 368, 528
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	4 cut(s)	151, 182, 410, 493
MboI	GATC	4 cut(s)	149, 180, 408, 491
MboII	GAAGA	8 cut(s)	8, 11, 190, 212, 230, 293, 305, 487
MflI	RGATCY	2 cut(s)	149, 491
MhlI	GDGCHC	2 cut(s)	231, 429
MluCI	AATT	4 cut(s)	360, 396, 484, 523
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	4 cut(s)	116, 183, 271, 334
MroI	TCCGGA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	534
NdeII	GATC	4 cut(s)	149, 180, 408, 491
NlaIII	CATG	4 cut(s)	167, 227, 425, 461
NmuCI	GTSAC	1 cut(s)	29
PagI	TCATGA	1 cut(s)	421
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PsuI	RGATCY	2 cut(s)	149, 491
RsaI	GTAC	3 cut(s)	7, 300, 390
RsaNI	GTAC	3 cut(s)	6, 299, 389
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	149, 180, 408, 491
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	231, 429
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	4 cut(s)	360, 396, 484, 523
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	324
TaqI	TCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	360, 396, 484, 523
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	5 cut(s)	146, 212, 224, 410, 455
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.