Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Forward (+)

28609849 .. 28610141

Gene Structure 293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37807

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGGCAATGCTTTTTTTCTCCAGGGCGGTGACTGCGCTAAGAACGTGAAGGAGCTCAGTGCCAATAACATTAGGGACAAATTCAGAGTTATGCTTGAGATGGGTGTGGTTCTTATGTTTGGAGGACATATGAATATTGTCAAGGTGGGAAGAATGGCGGGTTGGGTTAGACGGGCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

60

Amino Acids

6.76

Weight (kDa)

10.42

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	2 - 54	7.5e-19	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	27, 158
AcsI	RAATTY	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	27, 158
BspCNI	CTCAG	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	39, 56
BstHHI	GCGC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	38
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	1 cut(s)	55
CviKI_1	RGCY	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	39, 56
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	180
FaiI	YATR	5 cut(s)	92, 116, 129, 131, 178
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	176
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	37
GsuI	CTGGAG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	39, 56
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	180
HspAI	GCGC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	2 cut(s)	8, 35
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	29
MboII	GAAGA	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeI	CATATG	1 cut(s)	129
NlaIII	CATG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	3 cut(s)	48, 57, 147
SgeI	CNNG	6 cut(s)	34, 35, 58, 107, 154, 171
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	2 cut(s)	27, 158
SspI	AATATT	1 cut(s)	136
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	48
TasI	AATT	1 cut(s)	80
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.