Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008008.1

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Forward (+)

66141 .. 67040

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008008.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtctccctcatcaatggactatacgaatctcaacgcccctcacttcatgcgaaccaccatcatcggcgtcacctacgacggtggcatcgtcctcggcgtcgactcccaaacctccactgggtttccaaattctaatactgaaatcaaaatcagaaattgggttttttttttggcagaaggcggctggggtggtgactgcgctgagagtttgaaggagttcagtgctaataacattagggacaccttcagagttatgcttgagattggtgtggttcttatgttcggaggacaaatgaatattgtcaaggttagatctctcggtcggaagaatggtggattgggtcagacgggcatggcagccctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

122

Amino Acids

13.18

Weight (kDa)

6.55

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	232
AcyI	GRCGYC	2 cut(s)	69, 99
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
Alw26I	GTCTC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	64, 206
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BcoDI	GTCTC	1 cut(s)	9
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	2 cut(s)	184, 360
BlsI	GCNGC	2 cut(s)	185, 361
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	281
BsaHI	GRCGYC	2 cut(s)	69, 99
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	314
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	314
BssNI	GRCGYC	2 cut(s)	69, 99
Bst4CI	ACNGT	1 cut(s)	83
BstACI	GRCGYC	2 cut(s)	69, 99
BstDEI	CTNAG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	317
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	314
BstMCI	CGRYCG	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	117, 229
CfoI	GCGC	1 cut(s)	203
CseI	GACGC	2 cut(s)	58, 88
CviAII	CATG	2 cut(s)	49, 355
CviJI	RGCY	2 cut(s)	186, 362
CviKI_1	RGCY	2 cut(s)	186, 362
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	232
FaeI	CATG	2 cut(s)	52, 358
FaiI	YATR	5 cut(s)	24, 50, 257, 281, 356
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	48, 354
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	184, 360
Fsp4HI	GCNGC	2 cut(s)	184, 360
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	184, 360
GsaI	CCCAGC	1 cut(s)	190
HgaI	GACGC	2 cut(s)	58, 88
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	2 cut(s)	69, 99
Hin1II	CATG	2 cut(s)	52, 358
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	28, 104
HphI	GGTGA	2 cut(s)	64, 206
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	155, 251, 287, 327, 348, 368
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	83, 104
HpyAV	CCTTC	3 cut(s)	173, 208, 256
HpyCH4III	ACNGT	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	2 cut(s)	69, 99
Hsp92II	CATG	2 cut(s)	52, 358
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	314
LpnPI	CCDG	2 cut(s)	105, 172
LweI	GCATC	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	70, 194
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	2 cut(s)	130, 157
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	19, 51, 104, 124, 281
MroXI	GAANNNNTTC	1 cut(s)	218
NdeII	GATC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	52, 358
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	70, 194
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 96
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	185, 361
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	101
SatI	GCNGC	2 cut(s)	184, 360
Sau3AI	GATC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	98
SetI	ASST	4 cut(s)	77, 116, 248, 312
SfaNI	GCATC	1 cut(s)	96
SgeI	CNNG	8 cut(s)	61, 107, 132, 199, 272, 319, 332, 363
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	130, 157
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	130, 157
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	2 cut(s)	124, 229
TseFI	GTSAC	2 cut(s)	70, 194
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	2 cut(s)	70, 194
TspDTI	ATGAA	2 cut(s)	37, 311
TspRI	CASTG	2 cut(s)	124, 229
XapI	RAATTY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.