Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Reverse (-)

31802479 .. 31802996

Gene Structure 518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49217

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCTTGCCAAGCTATATGAGGAGGGTGGTGTCTACGCTAAGGGCTTGAAGGAGTTCAATGCCAATAACATTAGGGACACCTTCAGAGTTATGCTTGAGATGGGTGTGGTTCTTATGTTCGGAGGACAAATGAATATTTTCAAGGTGGGAAGAATGGTGGATTGGGTCAAACAGGCATGGCAACCCTCTGAACATCAGTTCTTGTCTGTCACACCAGTTTGGATGTTGTGGTCTTTATGCGCACTTTCATCTTCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

86

Amino Acids

9.81

Weight (kDa)

7.89

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	9 - 52	2.8e-08	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	33
AcuI	CTGAAG	2 cut(s)	67, 237
AgsI	TTSAA	3 cut(s)	49, 58, 142
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Asp700I	GAANNNNTTC	2 cut(s)	53, 137
AspLEI	GCGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	242
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	2 cut(s)	13, 45
CviKI_1	RGCY	2 cut(s)	13, 45
DdeI	CTNAG	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	67, 237
FaeI	CATG	1 cut(s)	180
FaiI	YATR	6 cut(s)	16, 18, 92, 116, 178, 238
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	1 cut(s)	235
FspAI	RTGCGCAY	1 cut(s)	241
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	86, 122, 190
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	43, 91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	180
HspAI	GCGC	1 cut(s)	240
LpnPI	CCDG	3 cut(s)	158, 228, 240
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	162, 243
MnlI	CCTC	4 cut(s)	13, 16, 116, 196
MroXI	GAANNNNTTC	2 cut(s)	53, 137
MwoI	GCNNNNNNNGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	208
NsbI	TGCGCA	1 cut(s)	241
PdmI	GAANNNNTTC	2 cut(s)	53, 137
SetI	ASST	4 cut(s)	15, 83, 147, 259
SgeI	CNNG	9 cut(s)	17, 22, 58, 107, 154, 185, 189, 214, 227
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SspI	AATATT	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	146, 237
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	2 cut(s)	53, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.