MD04G1200600.v1.1

cardiolipin acyl-chain remodeling

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
28711331 .. 28715380
4050 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1200600.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGGCTGCTGCGAGGGTTGAGCGTGGCGATCTATGGAAGAGCAAGGCCCTGTCGGTGCAGCTCCGGCTCAGGCAGCGGTTCAGGGTGGAGGTGGATCGCCGCCTCCGGCACCACCCCATTTTTTCCAACGACGGTTACTTCTCCTCCACATTGCAGCGTTGGCTCGAGCGATTTCGCGACTTCCGCCGTGATTCCCTCCCTTCCTCCACCGCCTTCTACCGCAAACGAGTGGGTAAGGATTTCAATGCTGAAGAAGAATCAATCCTTCTACGCATGCTTCAAGCTGTGGCTGTTCCGGTCATTGGCAATGTTTGTCATGTGTTTATGAATGGATTGAATCAGGTTCAGGTGTATGGTGTAGAAAAATTACATGATGCCGTGCTACGCAGACCCAAAGGCAAGCCTCTTATAACGGTCAGCAATCATGTTGCTTCTATGGATGATCCGCTTGTTCTCTCTGCGTTGCTTCCTCGACATGTTCTTCTGGATGCTCAGAACTTGAGGTGGACACTTTGCGCGTCTGATCGTTGTTTTGCAAATCCTGTAACTTCAGCATTTTTTCGATCTGTCAAAGTCCTGCCAGTTTCTCGTGGTGATGGGATTTATCAAAAGGGAATGGATGAGGCTATTTCAAAATTGAATCAAGGTGGTTGGGTTCACATCTTCCCAGAAGGTAGTCGTTCTCGAGATGGTGGAAAAACCATGGGGTCTTCCAAGAGAGGTGTCGGGAGGTTGGTCCTTGACGCCGACAATATTCCCATGGTTGTTCCATTTGTGCATAGCGGGATGCAGGACATTATGCCTATTGGTGCTAGCATCCCAAGGATAGGCAATACGGTAACGGTGGTTATTGGCGATCCAATCTACTTCGATGATTTGTTGAATTCTGAAGGAGCTAAGCATGTATCAAGAGGAAAGCTGTACGATGCTGTATCTTCAAGGATTGGTCATAGACTAAGCGAACTGAAAGTTCAGGTCGACAAATTAGCTCAAGTAACTCGGTCACAAAATCTTCCTGCGCAGAACACAGACCGAGCTGCAGTGATTTTGCAGCATGTTGATTGGGAATCATTCGGAATGGGGAACCTTACATCTTCCGAAGATGATGGTTCACCGGTGCAAGAAACTGAGATCCAACTAGCTGCTCCTCCCCATACGCAAGAACCCCGGTCTGCTGATTGGAGTTACAGAGTGGGTTTCTCCCGTGAAGGTGGCTTTGCATCACGGATGCGTAGTTTCATGGACCAGAGTGAGTTTATGGGTTTCGCAGCCAGAGGCATATTTATGAACCGTAGAGTCCAAGAAACCTCTCCGAGCGGCCGAGGGGTTGGTCCGTTGAAAGCATGGAGACGATACTTGGAGGCCAATGTATTACCACAATGGAATTAG

Protein Analysis

463

Amino Acids

51.83

Weight (kDa)

9.83

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 115 - 259 1.1e-18 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
Acc16I TGCGCA 1 cut(s) 1020
AccB1I GGYRCC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 1317
AccI GTMKAC 1 cut(s) 978
AccII CGCG 2 cut(s) 177, 518
AciI CCGC 8 cut(s) 76, 100, 184, 210, 220, 446, 783, 1317
AclWI GGATC 4 cut(s) 102, 437, 851, 1126
AcoI YGGCCR 1 cut(s) 1318
AcsI RAATTY 1 cut(s) 883
AcuI CTGAAG 3 cut(s) 270, 534, 909
AcyI GRCGYC 1 cut(s) 744
AfaI GTAC 1 cut(s) 923
AfiI CCNNNNNNNGG 2 cut(s) 302, 827
AflIII ACRYGT 1 cut(s) 475
AgeI ACCGGT 1 cut(s) 1114
AgsI TTSAA 8 cut(s) 244, 281, 337, 633, 640, 883, 939, 1339
AluBI AGCT 7 cut(s) 61, 284, 896, 919, 989, 1037, 1142
AluI AGCT 7 cut(s) 61, 284, 896, 919, 989, 1037, 1142
Alw26I GTCTC 1 cut(s) 1342
AlwI GGATC 4 cut(s) 102, 437, 851, 1126
Ama87I CYCGRG 2 cut(s) 164, 684
AoxI GGCC 3 cut(s) 45, 1318, 1362
ApeKI GCWGC 9 cut(s) 5, 8, 58, 73, 154, 1037, 1051, 1142, 1268
ApoI RAATTY 1 cut(s) 883
AsiGI ACCGGT 1 cut(s) 1114
AspLEI GCGC 2 cut(s) 518, 1021
AspS9I GGNCC 4 cut(s) 46, 736, 1243, 1331
AsuC2I CCSGG 1 cut(s) 1168
AsuHPI GGTGA 2 cut(s) 605, 1104
AsuNHI GCTAGC 1 cut(s) 812
AvaI CYCGRG 2 cut(s) 164, 684
AvaII GGWCC 3 cut(s) 736, 1243, 1331
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 7 cut(s) 70, 85, 166, 1024, 1063, 1129, 1280
BccI CCATC 3 cut(s) 590, 683, 1100
BceAI ACGGC 2 cut(s) 171, 362
BcnI CCSGG 1 cut(s) 1168
BcoDI GTCTC 1 cut(s) 1342
BfaI CTAG 2 cut(s) 813, 1139
BfmI CTRYAG 1 cut(s) 1038
BlpI GCTNAGC 1 cut(s) 897
Bme1390I CCNGG 1 cut(s) 1168
Bme18I GGWCC 3 cut(s) 736, 1243, 1331
BmeT110I CYCGRG 2 cut(s) 164, 684
BmgT120I GGNCC 4 cut(s) 46, 736, 1243, 1331
BmiI GGNNCC 2 cut(s) 110, 1085
BmrFI CCNGG 1 cut(s) 1168
BmsI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
BmtI GCTAGC 1 cut(s) 816
BpiI GAAGAC 1 cut(s) 702
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 520, 975
BpuMI CCSGG 1 cut(s) 1168
BsaHI GRCGYC 1 cut(s) 744
BsaJI CCNNGG 5 cut(s) 702, 759, 821, 1166, 1321
BsaWI WCCGGW 2 cut(s) 295, 1114
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 827
Bse118I RCCGGY 1 cut(s) 1114
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 2 cut(s) 149, 313
BseDI CCNNGG 5 cut(s) 702, 759, 821, 1166, 1321
BseGI GGATG 6 cut(s) 445, 493, 625, 792, 816, 1233
BseLI CCNNNNNNNGG 2 cut(s) 302, 827
BseMI GCAATG 2 cut(s) 149, 313
BseMII CTCAG 3 cut(s) 82, 506, 1119
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 2 cut(s) 133, 1137
BseX3I CGGCCG 1 cut(s) 1318
BseXI GCAGC 7 cut(s) 70, 85, 166, 1024, 1063, 1129, 1280
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 2 cut(s) 177, 518
Bsh1285I CGRYCG 1 cut(s) 1321
BshFI GGCC 3 cut(s) 47, 1320, 1364
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 1114
BsiEI CGRYCG 1 cut(s) 1321
BsiHKCI CYCGRG 2 cut(s) 164, 684
BsiSI CCGG 5 cut(s) 64, 106, 296, 1115, 1168
BslI CCNNNNNNNGG 2 cut(s) 302, 827
BsmAI GTCTC 1 cut(s) 1342
BsmBI CGTCTC 1 cut(s) 1342
BsnI GGCC 3 cut(s) 47, 1320, 1364
BsoBI CYCGRG 2 cut(s) 164, 684
Bsp143I GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
Bsp1720I GCTNAGC 1 cut(s) 897
Bsp19I CCATGG 2 cut(s) 702, 759
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 8 cut(s) 76, 100, 184, 210, 220, 446, 783, 1317
BspANI GGCC 3 cut(s) 47, 1320, 1364
BspCNI CTCAG 3 cut(s) 81, 505, 1120
BspFNI CGCG 2 cut(s) 177, 518
BspLI GGNNCC 2 cut(s) 110, 1085
BspMAI CTGCAG 1 cut(s) 1042
BspOI GCTAGC 1 cut(s) 816
BspPI GGATC 4 cut(s) 102, 437, 851, 1126
BspQI GCTCTTC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 1317
BsrDI GCAATG 2 cut(s) 149, 313
BsrFI RCCGGY 1 cut(s) 1114
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 1114
BssECI CCNNGG 5 cut(s) 702, 759, 821, 1166, 1321
BssMI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
BssNI GRCGYC 1 cut(s) 744
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 3 cut(s) 702, 759, 821
Bst2BI CACGAG 1 cut(s) 588
Bst4CI ACNGT 5 cut(s) 134, 415, 838, 844, 1292
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 744
BstC8I GCNNGC 3 cut(s) 275, 401, 814
BstDEI CTNAG 5 cut(s) 68, 492, 897, 956, 1128
BstDSI CCRYGG 2 cut(s) 702, 759
BstF5I GGATG 6 cut(s) 445, 493, 625, 792, 816, 1233
BstFNI CGCG 2 cut(s) 177, 518
BstHHI GCGC 2 cut(s) 518, 1021
BstKTI GATC 7 cut(s) 31, 97, 445, 526, 566, 859, 1134
BstMAI GTCTC 1 cut(s) 1342
BstMBI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
BstMCI CGRYCG 1 cut(s) 1321
BstMWI GCNNNNNNNGC 4 cut(s) 64, 73, 160, 183
BstNSI RCATGY 4 cut(s) 277, 479, 905, 1058
BstSCI CCNGG 1 cut(s) 1166
BstSFI CTRYAG 1 cut(s) 1038
BstUI CGCG 2 cut(s) 177, 518
BstV1I GCAGC 7 cut(s) 70, 85, 166, 1024, 1063, 1129, 1280
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 1131
BstYI RGATCY 1 cut(s) 1131
BstZI CGGCCG 1 cut(s) 1318
BsuRI GGCC 3 cut(s) 47, 1320, 1364
BtgI CCRYGG 2 cut(s) 702, 759
BtsCI GGATG 6 cut(s) 445, 493, 625, 792, 816, 1233
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 1 cut(s) 1047
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 275, 401, 814
CfoI GCGC 2 cut(s) 518, 1021
Cfr10I RCCGGY 1 cut(s) 1114
Cfr13I GGNCC 4 cut(s) 46, 736, 1243, 1331
CseI GACGC 2 cut(s) 507, 752
Csp6I GTAC 1 cut(s) 922
CspAI ACCGGT 1 cut(s) 1114
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 5 cut(s) 68, 492, 897, 956, 1128
DpnI GATC 7 cut(s) 30, 96, 444, 525, 565, 858, 1133
DpnII GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
EaeI YGGCCR 1 cut(s) 1318
EagI CGGCCG 1 cut(s) 1318
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 173
EclXI CGGCCG 1 cut(s) 1318
Eco130I CCWWGG 3 cut(s) 702, 759, 821
Eco47I GGWCC 3 cut(s) 736, 1243, 1331
Eco52I CGGCCG 1 cut(s) 1318
Eco57I CTGAAG 3 cut(s) 270, 534, 909
Eco88I CYCGRG 2 cut(s) 164, 684
EcoO109I RGGNCCY 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 883
EcoT14I CCWWGG 3 cut(s) 702, 759, 821
ErhI CCWWGG 3 cut(s) 702, 759, 821
Esp3I CGTCTC 1 cut(s) 1342
FauI CCCGC 1 cut(s) 776
FblI GTMKAC 1 cut(s) 978
FokI GGATG 6 cut(s) 452, 500, 632, 799, 803, 1240
FspBI CTAG 2 cut(s) 813, 1139
FspI TGCGCA 1 cut(s) 1020
GlaI GCGC 2 cut(s) 517, 1020
HaeIII GGCC 3 cut(s) 47, 1320, 1364
HapII CCGG 5 cut(s) 64, 106, 296, 1115, 1168
HgaI GACGC 2 cut(s) 507, 752
HhaI GCGC 2 cut(s) 518, 1021
Hin1I GRCGYC 1 cut(s) 744
Hin6I GCGC 2 cut(s) 516, 1019
HinP1I GCGC 2 cut(s) 516, 1019
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HinfI GANTC 6 cut(s) 191, 257, 337, 640, 1067, 1296
HpaII CCGG 5 cut(s) 64, 106, 296, 1115, 1168
HphI GGTGA 2 cut(s) 605, 1104
Hpy166II GTNNAC 4 cut(s) 507, 658, 979, 1112
Hpy188I TCNGA 6 cut(s) 495, 523, 889, 1076, 1099, 1314
Hpy188III TCNNGA 6 cut(s) 176, 485, 684, 686, 727, 909
Hpy8I GTNNAC 4 cut(s) 507, 658, 979, 1112
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 6 cut(s) 210, 223, 275, 665, 884, 1202
HpyCH4III ACNGT 5 cut(s) 134, 415, 838, 844, 1292
HpyCH4V TGCA 9 cut(s) 58, 154, 536, 778, 790, 1040, 1051, 1120, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 73, 160, 183
HpyF3I CTNAG 5 cut(s) 68, 492, 897, 956, 1128
Hsp92I GRCGYC 1 cut(s) 744
HspAI GCGC 2 cut(s) 516, 1019
Kzo9I GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 3 cut(s) 66, 893, 1150
Lsp1109I GCAGC 7 cut(s) 70, 85, 166, 1024, 1063, 1129, 1280
LweI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
MaeI CTAG 2 cut(s) 813, 1139
MaeIII GTNAC 6 cut(s) 134, 544, 838, 994, 1002, 1184
MalI GATC 7 cut(s) 30, 96, 444, 525, 565, 858, 1133
MbiI CCGCTC 1 cut(s) 1317
MboI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
MflI RGATCY 1 cut(s) 1131
MluCI AATT 5 cut(s) 365, 635, 883, 983, 1384
MlyI GAGTC 1 cut(s) 1305
MmeI TCCRAC 2 cut(s) 150, 1159
MslI CAYNNNNRTG 1 cut(s) 1283
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 5 cut(s) 64, 106, 296, 1115, 1168
MspR9I CCNGG 1 cut(s) 1168
MvnI CGCG 2 cut(s) 177, 518
MwoI GCNNNNNNNGC 4 cut(s) 64, 73, 160, 183
NciI CCSGG 1 cut(s) 1168
NcoI CCATGG 2 cut(s) 702, 759
NdeII GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
NheI GCTAGC 1 cut(s) 812
NlaIV GGNNCC 2 cut(s) 110, 1085
NmeAIII GCCGAG 1 cut(s) 1346
NmuCI GTSAC 1 cut(s) 1002
NruI TCGCGA 1 cut(s) 177
NsbI TGCGCA 1 cut(s) 1020
NspI RCATGY 4 cut(s) 277, 479, 905, 1058
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 2 cut(s) 164, 684
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 32
PfeI GAWTC 5 cut(s) 191, 257, 337, 640, 1067
PinAI ACCGGT 1 cut(s) 1114
PleI GAGTC 1 cut(s) 1304
PpsI GAGTC 1 cut(s) 1304
PscI ACATGT 1 cut(s) 475
PsiI TTATAA 1 cut(s) 410
PspN4I GGNNCC 2 cut(s) 110, 1085
PspPI GGNCC 4 cut(s) 46, 736, 1243, 1331
PspXI VCTCGAGB 1 cut(s) 164
PstI CTGCAG 1 cut(s) 1042
PsuI RGATCY 1 cut(s) 1131
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
RseI CAYNNNNRTG 1 cut(s) 1283
SalI GTCGAC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 32
Sau3AI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
Sau96I GGNCC 4 cut(s) 46, 736, 1243, 1331
SchI GAGTC 1 cut(s) 1305
ScrFI CCNGG 1 cut(s) 1168
SfaNI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
SfcI CTRYAG 1 cut(s) 1038
Sfr274I CTCGAG 2 cut(s) 164, 684
SgrAI CRCCGGYG 1 cut(s) 1114
SinI GGWCC 3 cut(s) 736, 1243, 1331
SlaI CTCGAG 2 cut(s) 164, 684
SmiMI CAYNNNNRTG 1 cut(s) 1283
SmlI CTYRAG 4 cut(s) 164, 499, 684, 990
SmoI CTYRAG 4 cut(s) 164, 499, 684, 990
SphI GCATGC 1 cut(s) 277
Sse9I AATT 5 cut(s) 365, 635, 883, 983, 1384
SsiI CCGC 8 cut(s) 76, 100, 184, 210, 220, 446, 783, 1317
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 813, 1139
StyD4I CCNGG 1 cut(s) 1166
StyI CCWWGG 3 cut(s) 702, 759, 821
TaaI ACNGT 5 cut(s) 134, 415, 838, 844, 1292
TaqI TCGA 6 cut(s) 165, 472, 562, 685, 870, 978
TaqII GACCGA 2 cut(s) 990, 1047
TasI AATT 5 cut(s) 365, 635, 883, 983, 1384
TauI GCSGC 2 cut(s) 102, 1320
TfiI GAWTC 5 cut(s) 191, 257, 337, 640, 1067
TscAI CASTG 1 cut(s) 1047
TseFI GTSAC 1 cut(s) 1002
TseI GCWGC 9 cut(s) 5, 8, 58, 73, 154, 1037, 1051, 1142, 1268
Tsp45I GTSAC 1 cut(s) 1002
TspDTI ATGAA 3 cut(s) 341, 1228, 1301
TspGWI ACGGA 2 cut(s) 1240, 1323
TspRI CASTG 1 cut(s) 1047
VpaK11BI GGWCC 3 cut(s) 736, 1243, 1331
XapI RAATTY 1 cut(s) 883
XceI RCATGY 4 cut(s) 277, 479, 905, 1058
XhoI CTCGAG 2 cut(s) 164, 684
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 2 cut(s) 813, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.