Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005072

Physical Location & Seq

Genomic Coordinates Forward (+)

5362640 .. 5365115

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGCTGCGAGGGTTGAGCGCGGAGATCTATGGAAGAGCAATGCCCTCTCCGTACAACGCCGGCTCAGGGAGCGGTTCAGAGTCGAGGTGGACCGCCGGTTCAGGCACCACCCGGTTTTCGCTGACGGTTACTTCGCCTCCACAGTGCAGCGTTGGCTCCAGCGGTTCCGTGATTTCAAGAGGGACTCTCTTCCGTCCTCCACCGTCTTCTATCGCAAACGAGTGGGCAAGGAAATCAACGCTGAAGAAGAGTCGGCCATTCTTCGCATGGTGCAAGCTGTTGCTGTGCCGGTCATTGGCAATGTTTGCCATGTGTTCATGAATGGATTAAATCGTGTTCAGGTCTATGGTTTAGAAAAGTTACACGACGCCTTGCTACGCAGACCCAAAGATAGGCCTCTTATAACGGTTAGCAATCATGTGGCTTCTATGGATGATCCACTTGTTATTGCTGCACTGCTTCCTCCAAATGTTCTTCTGGATGCTAAGAACTTGAGGTGGACACTCTGTGCATCTGATAGGTGTTTTTCGAATCCTGTAACTTCAGCATTTTTCCGATCTGTCAAAGTCTTGCCAGTTGCTCGTGGTGATGGGATTTATCAAAAGGGTATGGACATTGCTATTTCAAAATTAAATCAAGGTGGCTGGGTTCACATCTTCCCAGAAGGTAGTCGTTCTCGAGATGGTGGTAAAACCCTGGGGTCACCCAAGAGAGGTGTTGGGAGCGGGATGCAGGACATCATGCCTATTGGTGCCAGCTTCCCGAGGATTGGCAAGACGGTAGGTAGTCTAATGCTTGTAACCATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

271

Amino Acids

30.38

Weight (kDa)

10.53

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	113 - 245	3.6e-16	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05510 AT3G05510
fragaria_vesca	FvH4_6g06570
malus_domestica	MD04G1200600.v1.1 MD12G1213100.v1.1
prunus_persica	Prupe.2G037700_v2.0.a1 Prupe.6G320700_v2.0.a1 Prupe.6G320700_v2.0.a1
pyrus_communis	pycom04g17680 pycom12g19900
rosa_chinensis	RchiOBHm_Chr1g0322071 RchiOBHm_Chr1g0322081 RchiOBHm_Chr1g0322141 RchiOBHm_Chr3g0455731
rosa_laevigata	RLG00000025335
rosa_multiflora	Rmu_sc0002883.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141120 Rroxscaffold_5G00351290 Rroxscaffold_6G00423510 Rroxscaffold_6G00424010
rosa_rugosa	Rorug03G0009600
rosa_samantha	Rh1AG049300 Rh1AG049900 Rh3AG069200 Rh3BG071700 Rh3CG070000 Rh3DG072400
rosa_wichuraiana	Rw1G004550 Rw3G005590 Rw3G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AccB1I	GGYRCC	2 cut(s)	108, 755
AccBSI	CCGCTC	2 cut(s)	76, 729
AccII	CGCG	1 cut(s)	24
AciI	CCGC	5 cut(s)	24, 76, 97, 166, 729
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	267, 531
AcyI	GRCGYC	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	5 cut(s)	70, 299, 396, 716, 773
AgsI	TTSAA	2 cut(s)	181, 630
AjnI	CCWGG	1 cut(s)	699
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	281, 762
AluI	AGCT	2 cut(s)	281, 762
AlwI	GGATC	1 cut(s)	434
Ama87I	CYCGRG	2 cut(s)	681, 766
AoxI	GGCC	2 cut(s)	258, 398
ApeKI	GCWGC	4 cut(s)	5, 8, 151, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	602, 699
AsuII	TTCGAA	1 cut(s)	533
AvaI	CYCGRG	2 cut(s)	681, 766
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	2 cut(s)	108, 755
BauI	CACGAG	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	163, 442
BccI	CCATC	2 cut(s)	587, 680
BciT130I	CCWGG	1 cut(s)	701
BcnI	CCSGG	1 cut(s)	116
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	4 cut(s)	6, 9, 152, 456
BlsI	GCNGC	4 cut(s)	7, 10, 153, 457
Bme1390I	CCNGG	2 cut(s)	116, 701
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	2 cut(s)	681, 766
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	4 cut(s)	110, 161, 170, 757
BmrFI	CCNGG	2 cut(s)	116, 701
BmsI	GCATC	3 cut(s)	475, 524, 723
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	699, 700, 767
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 299, 396, 716, 773
Bse118I	RCCGGY	3 cut(s)	63, 99, 292
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	3 cut(s)	49, 310, 618
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	3 cut(s)	699, 700, 767
BseGI	GGATG	3 cut(s)	442, 490, 738
BseLI	CCNNNNNNNGG	5 cut(s)	70, 299, 396, 716, 773
BseMI	GCAATG	3 cut(s)	49, 310, 618
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	163, 442
BseYI	CCCAGC	1 cut(s)	648
BsgI	GTGCAG	2 cut(s)	170, 441
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	260, 400
BshNI	GGYRCC	2 cut(s)	108, 755
BsiHKCI	CYCGRG	2 cut(s)	681, 766
BsiSI	CCGG	4 cut(s)	64, 100, 116, 293
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	5 cut(s)	70, 299, 396, 716, 773
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	260, 400
BsoBI	CYCGRG	2 cut(s)	681, 766
Bsp119I	TTCGAA	1 cut(s)	533
Bsp143I	GATC	3 cut(s)	28, 439, 560
BspACI	CCGC	5 cut(s)	24, 76, 97, 166, 729
BspANI	GGCC	2 cut(s)	260, 400
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	4 cut(s)	110, 161, 170, 757
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	533
BspT107I	GGYRCC	2 cut(s)	108, 755
BsrBI	CCGCTC	2 cut(s)	76, 729
BsrDI	GCAATG	3 cut(s)	49, 310, 618
BsrFI	RCCGGY	3 cut(s)	63, 99, 292
BsrI	ACTGG	1 cut(s)	578
BssAI	RCCGGY	3 cut(s)	63, 99, 292
BssECI	CCNNGG	3 cut(s)	699, 700, 767
BssMI	GATC	3 cut(s)	28, 439, 560
BssNI	GRCGYC	1 cut(s)	372
BssSI	CACGAG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	5 cut(s)	131, 148, 208, 412, 784
Bst6I	CTCTTC	3 cut(s)	32, 198, 246
BstACI	GRCGYC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	65, 279, 760
BstDEI	CTNAG	2 cut(s)	68, 489
BstEII	GGTNACC	1 cut(s)	705
BstF5I	GGATG	3 cut(s)	442, 490, 738
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	31, 442, 563
BstMBI	GATC	3 cut(s)	28, 439, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 157, 309
BstNI	CCWGG	1 cut(s)	701
BstPI	GGTNACC	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	114, 699
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	163, 442
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	260, 400
BtsCI	GGATG	3 cut(s)	442, 490, 738
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	153, 458
Cac8I	GCNNGC	3 cut(s)	65, 279, 760
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	24
Cfr10I	RCCGGY	3 cut(s)	63, 99, 292
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	6 cut(s)	271, 314, 322, 422, 745, 808
CviJI	RGCY	9 cut(s)	5, 67, 160, 260, 281, 400, 428, 648, 762
CviKI_1	RGCY	9 cut(s)	5, 67, 160, 260, 281, 400, 428, 648, 762
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	68, 489
DpnI	GATC	3 cut(s)	30, 441, 562
DpnII	GATC	3 cut(s)	28, 439, 560
DraIII	CACNNNGTG	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	3 cut(s)	32, 198, 246
EarI	CTCTTC	3 cut(s)	32, 198, 246
Eco147I	AGGCCT	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	267, 531
Eco88I	CYCGRG	2 cut(s)	681, 766
Eco91I	GGTNACC	1 cut(s)	705
EcoO65I	GGTNACC	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	699
FaeI	CATG	6 cut(s)	274, 317, 325, 425, 748, 811
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	6 cut(s)	270, 313, 321, 421, 744, 807
FauI	CCCGC	1 cut(s)	722
Fnu4HI	GCNGC	4 cut(s)	6, 9, 152, 456
FokI	GGATG	3 cut(s)	449, 497, 745
Fsp4HI	GCNGC	4 cut(s)	6, 9, 152, 456
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	4 cut(s)	6, 9, 152, 456
GsaI	CCCAGC	1 cut(s)	652
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	260, 400
HapII	CCGG	4 cut(s)	64, 100, 116, 293
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	6 cut(s)	274, 317, 325, 425, 748, 811
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	4 cut(s)	84, 188, 254, 535
HpaII	CCGG	4 cut(s)	64, 100, 116, 293
HphI	GGTGA	2 cut(s)	602, 699
Hpy166II	GTNNAC	3 cut(s)	94, 504, 655
Hpy188I	TCNGA	3 cut(s)	83, 520, 560
Hpy188III	TCNNGA	6 cut(s)	181, 322, 482, 681, 683, 766
Hpy8I	GTNNAC	3 cut(s)	94, 504, 655
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	5 cut(s)	131, 148, 208, 412, 784
HpyCH4V	TGCA	5 cut(s)	151, 277, 458, 515, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 157, 309
HpyF3I	CTNAG	2 cut(s)	68, 489
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	6 cut(s)	274, 317, 325, 425, 748, 811
HspAI	GCGC	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	63
KroNI	GCCGGC	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	28, 439, 560
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	3 cut(s)	73, 165, 726
Lsp1109I	GCAGC	2 cut(s)	163, 442
LweI	GCATC	3 cut(s)	475, 524, 723
MaeIII	GTNAC	5 cut(s)	131, 363, 541, 705, 802
MalI	GATC	3 cut(s)	30, 441, 562
MbiI	CCGCTC	2 cut(s)	76, 729
MboI	GATC	3 cut(s)	28, 439, 560
MboII	GAAGA	8 cut(s)	49, 185, 202, 257, 260, 263, 470, 652
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	632
MlyI	GAGTC	3 cut(s)	93, 182, 263
MroNI	GCCGGC	1 cut(s)	63
MseI	TTAA	2 cut(s)	332, 635
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	4 cut(s)	64, 100, 116, 293
MspR9I	CCNGG	2 cut(s)	116, 701
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	73, 157, 309
NaeI	GCCGGC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	3 cut(s)	28, 439, 560
NgoMIV	GCCGGC	1 cut(s)	63
NlaIII	CATG	6 cut(s)	274, 317, 325, 425, 748, 811
NlaIV	GGNNCC	4 cut(s)	110, 161, 170, 757
NmuCI	GTSAC	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	533
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	1 cut(s)	321
PasI	CCCWGGG	1 cut(s)	700
PceI	AGGCCT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	4 cut(s)	7, 10, 153, 457
PleI	GAGTC	3 cut(s)	92, 182, 262
PpsI	GAGTC	3 cut(s)	92, 182, 262
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	699
PspEI	GGTNACC	1 cut(s)	705
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	4 cut(s)	110, 161, 170, 757
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	332, 635
SatI	GCNGC	4 cut(s)	6, 9, 152, 456
Sau3AI	GATC	3 cut(s)	28, 439, 560
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	3 cut(s)	93, 182, 263
ScrFI	CCNGG	2 cut(s)	116, 701
SfaNI	GCATC	3 cut(s)	475, 524, 723
Sfr274I	CTCGAG	1 cut(s)	681
SfuI	TTCGAA	1 cut(s)	533
SinI	GGWCC	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	681
SmlI	CTYRAG	2 cut(s)	496, 681
SmoI	CTYRAG	2 cut(s)	496, 681
Sse9I	AATT	1 cut(s)	632
SseBI	AGGCCT	1 cut(s)	400
SsiI	CCGC	5 cut(s)	24, 76, 97, 166, 729
StuI	AGGCCT	1 cut(s)	400
StyD4I	CCNGG	2 cut(s)	114, 699
TaaI	ACNGT	5 cut(s)	131, 148, 208, 412, 784
TaqI	TCGA	3 cut(s)	87, 533, 682
TasI	AATT	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	332, 635
Tru9I	TTAA	2 cut(s)	332, 635
TscAI	CASTG	2 cut(s)	153, 465
TseFI	GTSAC	1 cut(s)	705
TseI	GCWGC	4 cut(s)	5, 8, 151, 455
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	2 cut(s)	310, 338
TspGWI	ACGGA	3 cut(s)	43, 161, 186
TspRI	CASTG	2 cut(s)	153, 465
VpaK11BI	GGWCC	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.