Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005072

Physical Location & Seq

Genomic Coordinates Forward (+)

4818001 .. 4821234

Gene Structure 3234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG070000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGCAAGCTGTTGCTGTGCCGGTCATTGGCAATGTTTGCCATGTGTTCATGAATGGATTAAATCGTGTTCAGGTCTATGGTTTAGAAAAGTTACACGACGCCTTGCTACGCAGACCCAAAGACAGGCCTCTTATAACGGTTAGCAATCATGTGGCTTCTATGGATGATCCACTTGTTATTGCTGCACTGCTTCCTCCAAATGTTCTTCTGGATGCTAAGAACTTGAGGTGGACACTCTGTGCATCTGATAGGTGTTTTTCGAATCCTGTAACTTCAGCATTTTTCCGATCTGTCAAAGTCTTGCCAGTTGCTCGTGGTGATGGGATTTATCAAAAGGGTATGGACATTGCTATTTCAAAATTAAATCAAGGTGGCTGGGTTCACATCTTTCCAGAAGGTAGTCGTTCTCGAGATGGTGGTAAAACCCTGGGGTCACCCAAGAGAGGTGTTGGGAGGTTGGTCCTTGACGCTGACAATATTCCCATGGTTATTCCATTTGTACATAGCGGGATGCAGGACATCATGCCTATTGGTGCCAGCTTCCCGAGGATTGGCAAGACGGTGACGGTGGTTATTGGTGATCCAATCTACTTTGATGATTTGCTAAATAATGAAGGAGCAAAGCATTTATCAAGAGGAAAGTTATATGATGCAGTATCCTCAAGAATCGGTCATCGACTACGTCAACTGAAAGTTCAGGTTGACAAACTGACTCAAGGGACACAATTACTAAATGATGGTTCACTGATGGAAGAAACTCCAGAACAACTAGTTGTTGCCGGTACACAAGAGCCCAGGTCTTTTGATCGGTTCCGAGTGGGTTTCTCAAAAGATGGTTGGATTGCATCAAGGATGCGTAATTTTATGGAACCTACTGAGCTGATGGGATTTGCAGCCAGGGGCTTATTTATGAACCGTAGAGCAGTTGAAACCTCTGAAAGTGGTAGTAGAAGGGTTGGCCCGTTGAAAGCATGGAACCAATTTCTTGAAGCCGATGTACTACCAAGATGGAACTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

341

Amino Acids

37.73

Weight (kDa)

9.63

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	23 - 168	3.3e-18	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05510 AT3G05510
fragaria_vesca	FvH4_6g06570
malus_domestica	MD04G1200600.v1.1 MD12G1213100.v1.1
prunus_persica	Prupe.2G037700_v2.0.a1 Prupe.6G320700_v2.0.a1 Prupe.6G320700_v2.0.a1
pyrus_communis	pycom04g17680 pycom12g19900
rosa_chinensis	RchiOBHm_Chr1g0322071 RchiOBHm_Chr1g0322081 RchiOBHm_Chr1g0322141 RchiOBHm_Chr3g0455731
rosa_laevigata	RLG00000025335
rosa_multiflora	Rmu_sc0002883.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141120 Rroxscaffold_5G00351290 Rroxscaffold_6G00423510 Rroxscaffold_6G00424010
rosa_rugosa	Rorug03G0009600
rosa_samantha	Rh1AG049300 Rh1AG049900 Rh3AG069200 Rh3BG071700 Rh3CG070000 Rh3DG072400
rosa_wichuraiana	Rw1G004550 Rw3G005590 Rw3G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	536
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	164, 578
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	3 cut(s)	504, 787, 1002
AfiI	CCNNNNNNNGG	4 cut(s)	29, 126, 446, 554
AgsI	TTSAA	4 cut(s)	360, 932, 970, 992
AhlI	ACTAGT	1 cut(s)	772
AjnI	CCWGG	3 cut(s)	429, 797, 899
AluBI	AGCT	3 cut(s)	11, 543, 883
AluI	AGCT	3 cut(s)	11, 543, 883
AlwI	GGATC	2 cut(s)	164, 578
Ama87I	CYCGRG	2 cut(s)	411, 547
AoxI	GGCC	2 cut(s)	128, 961
ApeKI	GCWGC	2 cut(s)	185, 896
AspS9I	GGNCC	2 cut(s)	463, 962
AsuHPI	GGTGA	4 cut(s)	332, 429, 577, 593
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	2 cut(s)	411, 547
AvaII	GGWCC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	798
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BauI	CACGAG	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	172, 908
BccI	CCATC	7 cut(s)	317, 410, 734, 745, 830, 880, 1005
BciT130I	CCWGG	3 cut(s)	431, 799, 901
BciVI	GTATCC	1 cut(s)	670
BcuI	ACTAGT	1 cut(s)	772
BfaI	CTAG	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	2 cut(s)	186, 897
BlsI	GCNGC	2 cut(s)	187, 898
Bme1390I	CCNGG	3 cut(s)	431, 799, 901
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	2 cut(s)	411, 547
BmgT120I	GGNCC	2 cut(s)	463, 962
BmiI	GGNNCC	4 cut(s)	538, 815, 873, 980
BmrFI	CCNGG	3 cut(s)	431, 799, 901
BmsI	GCATC	6 cut(s)	205, 254, 504, 643, 846, 857
BpmI	CTGGAG	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	3 cut(s)	247, 649, 702
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	6 cut(s)	429, 430, 486, 548, 797, 900
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 126, 446, 554
Bse118I	RCCGGY	2 cut(s)	22, 782
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	40, 348
BseBI	CCWGG	3 cut(s)	431, 799, 901
BseDI	CCNNGG	6 cut(s)	429, 430, 486, 548, 797, 900
BseGI	GGATG	4 cut(s)	172, 220, 519, 861
BseLI	CCNNNNNNNGG	4 cut(s)	29, 126, 446, 554
BseMI	GCAATG	2 cut(s)	40, 348
BseMII	CTCAG	1 cut(s)	870
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	172, 908
BseYI	CCCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	130, 963
BshNI	GGYRCC	1 cut(s)	536
BsiHKCI	CYCGRG	2 cut(s)	411, 547
BsiSI	CCGG	2 cut(s)	23, 783
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	4 cut(s)	29, 126, 446, 554
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	2 cut(s)	130, 963
BsoBI	CYCGRG	2 cut(s)	411, 547
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp1407I	TGTACA	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	169, 290, 583, 808
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	130, 963
BspCNI	CTCAG	1 cut(s)	871
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	4 cut(s)	538, 815, 873, 980
BspPI	GGATC	2 cut(s)	164, 578
BspT104I	TTCGAA	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	536
BsrDI	GCAATG	2 cut(s)	40, 348
BsrFI	RCCGGY	2 cut(s)	22, 782
BsrGI	TGTACA	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	308
BssAI	RCCGGY	2 cut(s)	22, 782
BssECI	CCNNGG	6 cut(s)	429, 430, 486, 548, 797, 900
BssMI	GATC	4 cut(s)	169, 290, 583, 808
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	431, 799, 901
Bst4CI	ACNGT	5 cut(s)	142, 565, 571, 920, 1019
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	9, 541
BstDEI	CTNAG	2 cut(s)	219, 879
BstDSI	CCRYGG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	435
BstF5I	GGATG	4 cut(s)	172, 220, 519, 861
BstKTI	GATC	4 cut(s)	172, 293, 586, 811
BstMBI	GATC	4 cut(s)	169, 290, 583, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	3 cut(s)	431, 799, 901
BstPI	GGTNACC	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	429, 797, 899
BstV1I	GCAGC	2 cut(s)	172, 908
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	2 cut(s)	130, 963
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	4 cut(s)	172, 220, 519, 861
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	188, 746
Cac8I	GCNNGC	2 cut(s)	9, 541
CciI	TCATGA	1 cut(s)	51
Cfr10I	RCCGGY	2 cut(s)	22, 782
Cfr13I	GGNCC	2 cut(s)	463, 962
CseI	GACGC	2 cut(s)	110, 479
Csp6I	GTAC	3 cut(s)	503, 786, 1001
CviAII	CATG	6 cut(s)	44, 52, 152, 487, 526, 975
CviQI	GTAC	3 cut(s)	503, 786, 1001
DdeI	CTNAG	2 cut(s)	219, 879
DpnI	GATC	4 cut(s)	171, 292, 585, 810
DpnII	GATC	4 cut(s)	169, 290, 583, 808
DraIII	CACNNNGTG	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	411, 547
Eco91I	GGTNACC	1 cut(s)	435
EcoO65I	GGTNACC	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	429, 797, 899
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	6 cut(s)	47, 55, 155, 490, 529, 978
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	6 cut(s)	43, 51, 151, 486, 525, 974
FauI	CCCGC	1 cut(s)	503
Fnu4HI	GCNGC	2 cut(s)	186, 897
FokI	GGATG	4 cut(s)	179, 227, 526, 868
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	2 cut(s)	186, 897
FspBI	CTAG	1 cut(s)	773
GluI	GCNGC	2 cut(s)	186, 897
GsaI	CCCAGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	130, 963
HapII	CCGG	2 cut(s)	23, 783
HgaI	GACGC	2 cut(s)	110, 479
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	47, 55, 155, 490, 529, 978
HincII	GTYRAC	2 cut(s)	689, 706
HindII	GTYRAC	2 cut(s)	689, 706
HinfI	GANTC	3 cut(s)	265, 669, 715
HpaII	CCGG	2 cut(s)	23, 783
HphI	GGTGA	4 cut(s)	332, 429, 577, 593
Hpy166II	GTNNAC	6 cut(s)	234, 385, 689, 706, 746, 788
Hpy188I	TCNGA	4 cut(s)	250, 290, 818, 940
Hpy8I	GTNNAC	6 cut(s)	234, 385, 689, 706, 746, 788
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	392, 611, 948
HpyCH4III	ACNGT	5 cut(s)	142, 565, 571, 920, 1019
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	7 cut(s)	7, 188, 245, 517, 656, 848, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	2 cut(s)	219, 879
HpySE526I	ACGT	1 cut(s)	685
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	47, 55, 155, 490, 529, 978
Kzo9I	GATC	4 cut(s)	169, 290, 583, 808
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	2 cut(s)	172, 908
LweI	GCATC	6 cut(s)	205, 254, 504, 643, 846, 857
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	4 cut(s)	93, 271, 435, 565
MalI	GATC	4 cut(s)	171, 292, 585, 810
MboI	GATC	4 cut(s)	169, 290, 583, 808
MboII	GAAGA	2 cut(s)	200, 767
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	4 cut(s)	362, 728, 862, 983
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	9 cut(s)	141, 207, 222, 440, 450, 543, 632, 673, 946
MseI	TTAA	2 cut(s)	62, 365
MspI	CCGG	2 cut(s)	23, 783
MspR9I	CCNGG	3 cut(s)	431, 799, 901
MvaI	CCWGG	3 cut(s)	431, 799, 901
MwoI	GCNNNNNNNGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	4 cut(s)	169, 290, 583, 808
NlaIII	CATG	6 cut(s)	47, 55, 155, 490, 529, 978
NlaIV	GGNNCC	4 cut(s)	538, 815, 873, 980
NmuCI	GTSAC	2 cut(s)	435, 565
NspV	TTCGAA	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	411
PagI	TCATGA	1 cut(s)	51
PasI	CCCWGGG	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	265, 669
PflFI	GACNNNGTC	1 cut(s)	684
PkrI	GCNGC	2 cut(s)	187, 898
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	3 cut(s)	429, 797, 899
PspEI	GGTNACC	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	3 cut(s)	429, 797, 899
PspN4I	GGNNCC	4 cut(s)	538, 815, 873, 980
PspPI	GGNCC	2 cut(s)	463, 962
PsyI	GACNNNGTC	1 cut(s)	684
RsaI	GTAC	3 cut(s)	504, 787, 1002
RsaNI	GTAC	3 cut(s)	503, 786, 1001
SaqAI	TTAA	2 cut(s)	62, 365
SatI	GCNGC	2 cut(s)	186, 897
Sau3AI	GATC	4 cut(s)	169, 290, 583, 808
Sau96I	GGNCC	2 cut(s)	463, 962
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	3 cut(s)	431, 799, 901
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	6 cut(s)	205, 254, 504, 643, 846, 857
Sfr274I	CTCGAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	4 cut(s)	226, 411, 664, 717
SmoI	CTYRAG	4 cut(s)	226, 411, 664, 717
SpeI	ACTAGT	1 cut(s)	772
Sse9I	AATT	4 cut(s)	362, 728, 862, 983
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	510
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	773
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	3 cut(s)	429, 797, 899
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	5 cut(s)	142, 565, 571, 920, 1019
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	3 cut(s)	263, 412, 679
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	4 cut(s)	362, 728, 862, 983
TatI	WGTACW	2 cut(s)	502, 1000
TfiI	GAWTC	2 cut(s)	265, 669
Tru1I	TTAA	2 cut(s)	62, 365
Tru9I	TTAA	2 cut(s)	62, 365
TscAI	CASTG	2 cut(s)	195, 753
TseFI	GTSAC	2 cut(s)	435, 565
TseI	GCWGC	2 cut(s)	185, 896
Tsp45I	GTSAC	2 cut(s)	435, 565
TspDTI	ATGAA	4 cut(s)	40, 68, 630, 929
TspRI	CASTG	2 cut(s)	195, 753
Tth111I	GACNNNGTC	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	411
XspI	CTAG	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.