Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005072

Physical Location & Seq

Genomic Coordinates Reverse (-)

9557993 .. 9559096

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTGCTGCGAGGGTTGAGCGCGGAGATCTGTGGAAGAGCAACGCCCTCTCCGTACAGCGCTGGCTCAGGGAGCAATTCAGAGTCGAGGTGGACCGCCGATTCAGGCACCACCCGATTTTCTCCGACGGCTACTTCGCCTCCACCGTGCAGCGGTGGCTCCAGCGGTTCCGTGATTTCAAGAGAGACTCGCTTCCGTCTTCTATCGCAAACGAGGTCGTGGGCAAGGAAATCAACGCTGAAGAAGAGTCGGCCACTCTTCGCATGGTGCAAGCTGTTGCTGTGCCAGTCATTGGCAATGTTTGCCATGTGTTCATGAATGGATTAAATCATGTGGAGTTGTTAATGTCCCAAGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

120

Amino Acids

13.9

Weight (kDa)

8.0

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05510 AT3G05510
fragaria_vesca	FvH4_6g06570
malus_domestica	MD04G1200600.v1.1 MD12G1213100.v1.1
prunus_persica	Prupe.2G037700_v2.0.a1 Prupe.6G320700_v2.0.a1 Prupe.6G320700_v2.0.a1
pyrus_communis	pycom04g17680 pycom12g19900
rosa_chinensis	RchiOBHm_Chr1g0322071 RchiOBHm_Chr1g0322081 RchiOBHm_Chr1g0322141 RchiOBHm_Chr3g0455731
rosa_laevigata	RLG00000025335
rosa_multiflora	Rmu_sc0002883.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141120 Rroxscaffold_5G00351290 Rroxscaffold_6G00423510 Rroxscaffold_6G00424010
rosa_rugosa	Rorug03G0009600
rosa_samantha	Rh1AG049300 Rh1AG049900 Rh3AG069200 Rh3BG071700 Rh3CG070000 Rh3DG072400
rosa_wichuraiana	Rw1G004550 Rw3G005590 Rw3G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	24, 97, 154, 166
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	57
AfeI	AGCGCT	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	153, 293
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	62
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	3 cut(s)	5, 8, 151
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	2 cut(s)	24, 63
AspS9I	GGNCC	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	64
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	3 cut(s)	6, 9, 152
BlsI	GCNGC	3 cut(s)	7, 10, 153
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	110, 161, 170
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	68
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 293
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	153, 293
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	153, 293
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	4 cut(s)	24, 97, 154, 166
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	110, 161, 170
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	3 cut(s)	32, 240, 264
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	65, 273
BstDEI	CTNAG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	24, 63
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 157, 303
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	65, 273
CciI	TCATGA	1 cut(s)	315
CfoI	GCGC	2 cut(s)	24, 63
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	4 cut(s)	265, 308, 316, 332
CviJI	RGCY	6 cut(s)	5, 67, 132, 160, 254, 275
CviKI_1	RGCY	6 cut(s)	5, 67, 132, 160, 254, 275
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	3 cut(s)	32, 240, 264
EarI	CTCTTC	3 cut(s)	32, 240, 264
Eco47I	GGWCC	1 cut(s)	94
Eco47III	AGCGCT	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	261
FaeI	CATG	4 cut(s)	268, 311, 319, 335
FaiI	YATR	4 cut(s)	266, 309, 317, 333
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	4 cut(s)	264, 307, 315, 331
Fnu4HI	GCNGC	3 cut(s)	6, 9, 152
Fsp4HI	GCNGC	3 cut(s)	6, 9, 152
GlaI	GCGC	2 cut(s)	23, 62
GluI	GCNGC	3 cut(s)	6, 9, 152
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	254
HhaI	GCGC	2 cut(s)	24, 63
Hin1II	CATG	4 cut(s)	268, 311, 319, 335
Hin6I	GCGC	2 cut(s)	22, 61
HinP1I	GCGC	2 cut(s)	22, 61
HinfI	GANTC	4 cut(s)	84, 102, 188, 248
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	83, 127
Hpy188III	TCNNGA	2 cut(s)	181, 316
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	151, 271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 157, 303
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	268, 311, 319, 335
HspAI	GCGC	2 cut(s)	22, 61
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	73, 165
LpnPI	CCDG	5 cut(s)	49, 55, 91, 176, 300
Lsp1109I	GCAGC	1 cut(s)	163
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	5 cut(s)	49, 192, 251, 254, 257
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	3 cut(s)	93, 182, 257
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	6, 59, 82, 151, 208
MseI	TTAA	2 cut(s)	326, 344
MspA1I	CMGCKG	2 cut(s)	154, 166
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	73, 157, 303
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	268, 311, 319, 335
NlaIV	GGNNCC	3 cut(s)	110, 161, 170
PagI	TCATGA	1 cut(s)	315
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 144
PfeI	GAWTC	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	7, 10, 153
PleI	GAGTC	3 cut(s)	92, 182, 256
PpsI	GAGTC	3 cut(s)	92, 182, 256
PspN4I	GGNNCC	3 cut(s)	110, 161, 170
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	326, 344
SatI	GCNGC	3 cut(s)	6, 9, 152
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	3 cut(s)	93, 182, 257
SetI	ASST	3 cut(s)	93, 219, 277
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	24, 97, 154, 166
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	2 cut(s)	326, 344
Tru9I	TTAA	2 cut(s)	326, 344
TseI	GCWGC	3 cut(s)	5, 8, 151
TspDTI	ATGAA	2 cut(s)	304, 332
TspGWI	ACGGA	3 cut(s)	43, 161, 186
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.