pycom12g19900

cardiolipin acyl-chain remodeling

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
21579655 .. 21582552
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g19900.7

Sequence Viewer

Length: 1389 bp
ATGGCTGCTGCGAGGGTTGAGCGTGGCGATCTATGGAAGAGCAAGGCACTATCGGTACAGCTCCGGCTGAGGCAGCGGTTCAGGGTGGAGGTGGATCGCCGCCTCCGTCACCACCCCATTTTTTCCAACGAAGGTTACTTCTCCTCCACCTTCCAGCGCTTGCTCCAGCGCTTTCGCGACTTCCGCCGTGATTCCCTCCCTTCTTCCACCGCCTTCTATCTCAAACGAGTGGGTAAGGAATTCAATGCTGAAGAAGAATCAATCCTTCTTCGCATGCTTCAAGCTGTGGCTGTTCCGGTCATTGGCAATGTTTGTCATGTGTTTATGAATGGATTGAATCAGGTTCAGGTGTATGGTGTAGAAAAATTACATGATGCTGTGCTACGCAGACCCAAAGGAAAGCCTCTTATAACGGTGAGCAATCATGTTGCTTCTATGGATGATCCGCTTGTTCTCTCTGCGTTGCTTCCTCGACATGTTCTTCTGGATGCTCAGAACTTGAGGTGGACACTTTGCGCGTCTGATCGTTGCTTTGCAAACCCCGTAACTTCAGCATTTTTCCGATCTGTCAAAGTCCTGCCAGTTTCTCGTGGTGATGGGATTTATCAAAACGGAATGGACTTGGCTATTTCAAAGTTGAATCAAGGTGGTTGGGTTCACATCTTCCCAGAAGGTAGTCGTTCTCGAGATGGTGGAAAAACCATGGGGTCTTCCAAGAGAGGTGTTGGGAGGTTGGTCCTTGACGCGGACAATATTCCCATGGTTGTTCCATTTGTGCATAGTGGGATGCAGGACATCATGCCTATCGGTGCTAGCATCCCAAGGATTGGCAATACAGTGACGGTGGTTATTGGCGATCCAATCTACTTTGATGATTTGTTGAATTCTGAAGGAGCTAAGCATGTATCAAGAGGAAAGTTGTACGATGCTGTATCTTCAAGGATTGGTCATAGACTACGCGAACTGAAAGTTCAGGTCGACAAGTTGGCTCAAGTGACTCAGCCACAATATCTTCCTGCGCAGGACACAGACCGAGCTACAGTGATTCTGCAGCAGGTTGATTGGGAATCATTCGGAATGGGGAACCTTACATATTCCGAAGATGATGGTTCACCGGTGCAAGAAACTGAGATCCAACTAGCTGCTCCTCCCTGTACGGAAGAACCCCGGTCTGCTGATTGGAGTTACAGAGTGGGTTTCTCTCGTGAAGGTGGCATTGCATCACGGATGCGTAGTTTCATGGACCAGAGTGAGTTTATGGGTTTCGCGGCCAGAGGCATATTTATGAACCGTAGAGCCGAAGAACCCTCTCCGAGCCGTAGAGGGGTTGTTCCCTTGAAAGCGTGGAGACGATACTTGGAGGCCAATGTATTACCACAATGGAATTAG

Protein Analysis

463

Amino Acids

51.98

Weight (kDa)

9.62

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
Acc16I TGCGCA 1 cut(s) 1020
Acc36I ACCTGC 1 cut(s) 1045
AccB7I CCANNNNNTGG 1 cut(s) 827
AccI GTMKAC 1 cut(s) 978
AccII CGCG 5 cut(s) 177, 518, 746, 960, 1268
AciI CCGC 7 cut(s) 76, 100, 184, 210, 446, 746, 1268
AclWI GGATC 4 cut(s) 102, 437, 851, 1126
AcoI YGGCCR 1 cut(s) 1269
AcsI RAATTY 2 cut(s) 239, 883
AcuI CTGAAG 3 cut(s) 270, 534, 909
AfaI GTAC 3 cut(s) 57, 923, 1156
AfeI AGCGCT 2 cut(s) 158, 170
AfiI CCNNNNNNNGG 4 cut(s) 302, 745, 827, 1324
AflIII ACRYGT 1 cut(s) 475
AgeI ACCGGT 1 cut(s) 1114
AgsI TTSAA 8 cut(s) 244, 281, 337, 633, 640, 883, 939, 1339
AluBI AGCT 5 cut(s) 61, 284, 896, 1037, 1142
AluI AGCT 5 cut(s) 61, 284, 896, 1037, 1142
Alw26I GTCTC 1 cut(s) 1342
AlwI GGATC 4 cut(s) 102, 437, 851, 1126
Ama87I CYCGRG 1 cut(s) 684
Aor51HI AGCGCT 2 cut(s) 158, 170
AoxI GGCC 2 cut(s) 1269, 1362
ApeKI GCWGC 5 cut(s) 5, 8, 73, 1051, 1142
ApoI RAATTY 2 cut(s) 239, 883
AsiGI ACCGGT 1 cut(s) 1114
AspLEI GCGC 4 cut(s) 159, 171, 518, 1021
AspS9I GGNCC 2 cut(s) 736, 1243
AsuC2I CCSGG 1 cut(s) 1168
AsuHPI GGTGA 4 cut(s) 101, 427, 605, 1104
AsuNHI GCTAGC 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 684
AvaII GGWCC 2 cut(s) 736, 1243
BauI CACGAG 2 cut(s) 588, 1203
BbsI GAAGAC 1 cut(s) 702
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 85, 1063, 1129
BccI CCATC 3 cut(s) 590, 683, 1100
BceAI ACGGC 2 cut(s) 171, 1302
BcnI CCSGG 1 cut(s) 1168
BcoDI GTCTC 1 cut(s) 1342
BfaI CTAG 2 cut(s) 813, 1139
BfmI CTRYAG 2 cut(s) 1038, 1049
BfoI RGCGCY 2 cut(s) 160, 172
BfuAI ACCTGC 1 cut(s) 1045
BisI GCNGC 7 cut(s) 6, 9, 74, 100, 1052, 1143, 1269
BlpI GCTNAGC 1 cut(s) 897
BlsI GCNGC 7 cut(s) 7, 10, 75, 101, 1053, 1144, 1270
Bme1390I CCNGG 1 cut(s) 1168
Bme18I GGWCC 2 cut(s) 736, 1243
BmeT110I CYCGRG 1 cut(s) 684
BmgT120I GGNCC 2 cut(s) 736, 1243
BmiI GGNNCC 1 cut(s) 1085
BmrFI CCNGG 1 cut(s) 1168
BmsI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
BmtI GCTAGC 1 cut(s) 816
BpiI GAAGAC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 520, 975
BpuMI CCSGG 1 cut(s) 1168
BsaJI CCNNGG 4 cut(s) 702, 759, 821, 1166
BsaWI WCCGGW 2 cut(s) 295, 1114
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 745, 827, 1324
Bse118I RCCGGY 1 cut(s) 1114
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 2 cut(s) 313, 1215
BseDI CCNNGG 4 cut(s) 702, 759, 821, 1166
BseGI GGATG 5 cut(s) 445, 493, 792, 816, 1233
BseLI CCNNNNNNNGG 4 cut(s) 302, 745, 827, 1324
BseMI GCAATG 2 cut(s) 313, 1215
BseMII CTCAG 4 cut(s) 59, 506, 1013, 1119
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 2 cut(s) 133, 1137
BseXI GCAGC 3 cut(s) 85, 1063, 1129
Bsh1236I CGCG 5 cut(s) 177, 518, 746, 960, 1268
BshFI GGCC 2 cut(s) 1271, 1364
BshTI ACCGGT 1 cut(s) 1114
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 4 cut(s) 64, 296, 1115, 1168
BslI CCNNNNNNNGG 4 cut(s) 302, 745, 827, 1324
BsmAI GTCTC 1 cut(s) 1342
BsmBI CGTCTC 1 cut(s) 1342
BsnI GGCC 2 cut(s) 1271, 1364
BsoBI CYCGRG 1 cut(s) 684
Bsp143I GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
Bsp1720I GCTNAGC 1 cut(s) 897
Bsp19I CCATGG 2 cut(s) 702, 759
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 7 cut(s) 76, 100, 184, 210, 446, 746, 1268
BspANI GGCC 2 cut(s) 1271, 1364
BspCNI CTCAG 4 cut(s) 60, 505, 1012, 1120
BspFNI CGCG 5 cut(s) 177, 518, 746, 960, 1268
BspLI GGNNCC 1 cut(s) 1085
BspMAI CTGCAG 1 cut(s) 1053
BspMI ACCTGC 1 cut(s) 1045
BspOI GCTAGC 1 cut(s) 816
BspPI GGATC 4 cut(s) 102, 437, 851, 1126
BspQI GCTCTTC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 313, 1215
BsrFI RCCGGY 1 cut(s) 1114
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 1114
BssECI CCNNGG 4 cut(s) 702, 759, 821, 1166
BssMI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
BssSI CACGAG 2 cut(s) 588, 1203
BssT1I CCWWGG 3 cut(s) 702, 759, 821
Bst2BI CACGAG 2 cut(s) 588, 1203
Bst4CI ACNGT 5 cut(s) 415, 838, 844, 1042, 1292
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 161, 275, 814
BstDEI CTNAG 5 cut(s) 68, 492, 897, 999, 1128
BstDSI CCRYGG 2 cut(s) 702, 759
BstF5I GGATG 5 cut(s) 445, 493, 792, 816, 1233
BstFNI CGCG 5 cut(s) 177, 518, 746, 960, 1268
BstH2I RGCGCY 2 cut(s) 160, 172
BstHHI GCGC 4 cut(s) 159, 171, 518, 1021
BstKTI GATC 7 cut(s) 31, 97, 445, 526, 566, 859, 1134
BstMAI GTCTC 1 cut(s) 1342
BstMBI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
BstMWI GCNNNNNNNGC 2 cut(s) 73, 183
BstNSI RCATGY 3 cut(s) 277, 479, 905
BstSCI CCNGG 1 cut(s) 1166
BstSFI CTRYAG 2 cut(s) 1038, 1049
BstUI CGCG 5 cut(s) 177, 518, 746, 960, 1268
BstV1I GCAGC 3 cut(s) 85, 1063, 1129
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 1131
BstYI RGATCY 1 cut(s) 1131
BsuRI GGCC 2 cut(s) 1271, 1364
BtgI CCRYGG 2 cut(s) 702, 759
BtsCI GGATG 5 cut(s) 445, 493, 792, 816, 1233
BtsIMutI CAGTG 2 cut(s) 843, 1047
BtuMI TCGCGA 1 cut(s) 177
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 3 cut(s) 161, 275, 814
CfoI GCGC 4 cut(s) 159, 171, 518, 1021
Cfr10I RCCGGY 1 cut(s) 1114
Cfr13I GGNCC 2 cut(s) 736, 1243
CseI GACGC 2 cut(s) 507, 752
Csp6I GTAC 3 cut(s) 56, 922, 1155
CspAI ACCGGT 1 cut(s) 1114
CviQI GTAC 3 cut(s) 56, 922, 1155
DdeI CTNAG 5 cut(s) 68, 492, 897, 999, 1128
DpnI GATC 7 cut(s) 30, 96, 444, 525, 565, 858, 1133
DpnII GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
EaeI YGGCCR 1 cut(s) 1269
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 3 cut(s) 702, 759, 821
Eco47I GGWCC 2 cut(s) 736, 1243
Eco47III AGCGCT 2 cut(s) 158, 170
Eco57I CTGAAG 3 cut(s) 270, 534, 909
Eco88I CYCGRG 1 cut(s) 684
EcoRI GAATTC 2 cut(s) 239, 883
EcoT14I CCWWGG 3 cut(s) 702, 759, 821
ErhI CCWWGG 3 cut(s) 702, 759, 821
Esp3I CGTCTC 1 cut(s) 1342
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 7 cut(s) 6, 9, 74, 100, 1052, 1143, 1269
FokI GGATG 5 cut(s) 452, 500, 799, 803, 1240
Fsp4HI GCNGC 7 cut(s) 6, 9, 74, 100, 1052, 1143, 1269
FspBI CTAG 2 cut(s) 813, 1139
FspI TGCGCA 1 cut(s) 1020
GlaI GCGC 4 cut(s) 158, 170, 517, 1020
GluI GCNGC 7 cut(s) 6, 9, 74, 100, 1052, 1143, 1269
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 160, 172
HaeIII GGCC 2 cut(s) 1271, 1364
HapII CCGG 4 cut(s) 64, 296, 1115, 1168
HgaI GACGC 2 cut(s) 507, 752
HhaI GCGC 4 cut(s) 159, 171, 518, 1021
Hin6I GCGC 4 cut(s) 157, 169, 516, 1019
HinP1I GCGC 4 cut(s) 157, 169, 516, 1019
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HinfI GANTC 7 cut(s) 191, 257, 337, 640, 997, 1045, 1067
HpaII CCGG 4 cut(s) 64, 296, 1115, 1168
HphI GGTGA 4 cut(s) 101, 427, 605, 1104
Hpy166II GTNNAC 4 cut(s) 507, 658, 979, 1112
Hpy188I TCNGA 7 cut(s) 495, 523, 563, 889, 1076, 1099, 1314
Hpy188III TCNNGA 6 cut(s) 176, 485, 684, 686, 909, 1205
Hpy8I GTNNAC 4 cut(s) 507, 658, 979, 1112
HpyAV CCTTC 8 cut(s) 125, 160, 210, 223, 275, 665, 884, 1202
HpyCH4III ACNGT 5 cut(s) 415, 838, 844, 1042, 1292
HpyCH4V TGCA 6 cut(s) 536, 778, 790, 1051, 1120, 1220
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 183
HpyF3I CTNAG 5 cut(s) 68, 492, 897, 999, 1128
HspAI GCGC 4 cut(s) 157, 169, 516, 1019
Kzo9I GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 4 cut(s) 66, 168, 893, 1150
Lsp1109I GCAGC 3 cut(s) 85, 1063, 1129
LweI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
MaeI CTAG 2 cut(s) 813, 1139
MaeIII GTNAC 6 cut(s) 107, 134, 544, 838, 994, 1184
MalI GATC 7 cut(s) 30, 96, 444, 525, 565, 858, 1133
MboI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
MflI RGATCY 1 cut(s) 1131
MluCI AATT 4 cut(s) 239, 365, 883, 1384
MlyI GAGTC 1 cut(s) 991
MmeI TCCRAC 2 cut(s) 150, 1159
MslI CAYNNNNRTG 1 cut(s) 1283
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 4 cut(s) 64, 296, 1115, 1168
MspR9I CCNGG 1 cut(s) 1168
MvnI CGCG 5 cut(s) 177, 518, 746, 960, 1268
MwoI GCNNNNNNNGC 2 cut(s) 73, 183
NciI CCSGG 1 cut(s) 1168
NcoI CCATGG 2 cut(s) 702, 759
NdeII GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
NheI GCTAGC 1 cut(s) 812
NlaIV GGNNCC 1 cut(s) 1085
NmuCI GTSAC 3 cut(s) 107, 838, 994
NruI TCGCGA 1 cut(s) 177
NsbI TGCGCA 1 cut(s) 1020
NspI RCATGY 3 cut(s) 277, 479, 905
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 684
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 6 cut(s) 191, 257, 337, 640, 1045, 1067
PflMI CCANNNNNTGG 1 cut(s) 827
PinAI ACCGGT 1 cut(s) 1114
PkrI GCNGC 7 cut(s) 7, 10, 75, 101, 1053, 1144, 1270
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
PscI ACATGT 1 cut(s) 475
PsiI TTATAA 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 1085
PspPI GGNCC 2 cut(s) 736, 1243
PstI CTGCAG 1 cut(s) 1053
PsuI RGATCY 1 cut(s) 1131
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 3 cut(s) 57, 923, 1156
RsaNI GTAC 3 cut(s) 56, 922, 1155
RseI CAYNNNNRTG 1 cut(s) 1283
SalI GTCGAC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 32
SatI GCNGC 7 cut(s) 6, 9, 74, 100, 1052, 1143, 1269
Sau3AI GATC 7 cut(s) 28, 94, 442, 523, 563, 856, 1131
Sau96I GGNCC 2 cut(s) 736, 1243
SchI GAGTC 1 cut(s) 991
ScrFI CCNGG 1 cut(s) 1168
SfaNI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
SfcI CTRYAG 2 cut(s) 1038, 1049
Sfr274I CTCGAG 1 cut(s) 684
SgrAI CRCCGGYG 1 cut(s) 1114
SinI GGWCC 2 cut(s) 736, 1243
SlaI CTCGAG 1 cut(s) 684
SmiMI CAYNNNNRTG 1 cut(s) 1283
SmlI CTYRAG 3 cut(s) 499, 684, 990
SmoI CTYRAG 3 cut(s) 499, 684, 990
SphI GCATGC 1 cut(s) 277
Sse9I AATT 4 cut(s) 239, 365, 883, 1384
SsiI CCGC 7 cut(s) 76, 100, 184, 210, 446, 746, 1268
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 813, 1139
StyD4I CCNGG 1 cut(s) 1166
StyI CCWWGG 3 cut(s) 702, 759, 821
TaaI ACNGT 5 cut(s) 415, 838, 844, 1042, 1292
TaqI TCGA 3 cut(s) 472, 685, 978
TaqII GACCGA 1 cut(s) 1047
TasI AATT 4 cut(s) 239, 365, 883, 1384
TauI GCSGC 2 cut(s) 102, 1271
TfiI GAWTC 6 cut(s) 191, 257, 337, 640, 1045, 1067
TscAI CASTG 2 cut(s) 843, 1047
TseFI GTSAC 3 cut(s) 107, 838, 994
TseI GCWGC 5 cut(s) 5, 8, 73, 1051, 1142
Tsp45I GTSAC 3 cut(s) 107, 838, 994
TspDTI ATGAA 3 cut(s) 341, 1228, 1301
TspGWI ACGGA 4 cut(s) 95, 627, 1172, 1240
TspRI CASTG 2 cut(s) 843, 1047
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 736, 1243
XapI RAATTY 2 cut(s) 239, 883
XceI RCATGY 3 cut(s) 277, 479, 905
XhoI CTCGAG 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 2 cut(s) 813, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.