Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005072

Physical Location & Seq

Genomic Coordinates Reverse (-)

27434323 .. 27437547

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGTGGAAGAGCAATGCCCTCTCCGTACAACGCCGGCTCGGAAGCGGTTCGAGTCGAGGTGGACCGCCGGTTCGAGCACCACCTGGTTTTCGCCGACGGTTACTTCGCCTCCACCGTGCAGCGTTGGCTCCGGCGGTTCCGTGATTTCAAGAGGGACTCGCTTCCGTCCTCCACCGTCTTCTATCGCAAACGAGTGGGCAAGGAAATCAACGCTAAAGAAGAGTCGGCCATTCTTCGCATGGTGCAAGCTGTTGCTTTGTGCCGCAATCATGTGGCTTCTATGGATGATCCGCTTGTTATTGCTGCACTGCTCCCTCCAAATGTTCTTCGGATGCTAAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

115

Amino Acids

13.26

Weight (kDa)

10.55

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05510 AT3G05510
fragaria_vesca	FvH4_6g06570
malus_domestica	MD04G1200600.v1.1 MD12G1213100.v1.1
prunus_persica	Prupe.2G037700_v2.0.a1 Prupe.6G320700_v2.0.a1 Prupe.6G320700_v2.0.a1
pyrus_communis	pycom04g17680 pycom12g19900
rosa_chinensis	RchiOBHm_Chr1g0322071 RchiOBHm_Chr1g0322081 RchiOBHm_Chr1g0322141 RchiOBHm_Chr3g0455731
rosa_laevigata	RLG00000025335
rosa_multiflora	Rmu_sc0002883.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141120 Rroxscaffold_5G00351290 Rroxscaffold_6G00423510 Rroxscaffold_6G00424010
rosa_rugosa	Rorug03G0009600
rosa_samantha	Rh1AG049300 Rh1AG049900 Rh3AG069200 Rh3BG071700 Rh3CG070000 Rh3DG072400
rosa_wichuraiana	Rw1G004550 Rw3G005590 Rw3G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	47, 67, 136, 265, 293
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	84
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	121, 305
ArsI	GACNNNNNNTTYG	4 cut(s)	56, 88, 89, 121
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	133, 292
BciT130I	CCWGG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	122, 265, 306
BlsI	GCNGC	3 cut(s)	123, 266, 307
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	131, 140
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse118I	RCCGGY	2 cut(s)	35, 69
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	292, 339
BseMI	GCAATG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	133, 292
BsgI	GTGCAG	2 cut(s)	140, 291
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	36, 70, 133
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	5 cut(s)	47, 67, 136, 265, 293
BspANI	GGCC	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	131, 140
BspPI	GGATC	1 cut(s)	284
BspQI	GCTCTTC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	2 cut(s)	35, 69
BssAI	RCCGGY	2 cut(s)	35, 69
BssMI	GATC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	101, 118, 178
Bst6I	CTCTTC	2 cut(s)	4, 216
BstC8I	GCNNGC	2 cut(s)	37, 249
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	292, 339
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	133, 292
BstV2I	GAAGAC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	292, 339
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	2 cut(s)	37, 249
Cfr10I	RCCGGY	2 cut(s)	35, 69
Cfr13I	GGNCC	1 cut(s)	64
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	241, 272
CviJI	RGCY	5 cut(s)	39, 130, 230, 251, 278
CviKI_1	RGCY	5 cut(s)	39, 130, 230, 251, 278
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	4, 216
EarI	CTCTTC	2 cut(s)	4, 216
Eco47I	GGWCC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	244, 275
FaiI	YATR	3 cut(s)	242, 273, 284
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	240, 271
Fnu4HI	GCNGC	3 cut(s)	122, 265, 306
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	122, 265, 306
GluI	GCNGC	3 cut(s)	122, 265, 306
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	3 cut(s)	36, 70, 133
Hin1II	CATG	2 cut(s)	244, 275
HinfI	GANTC	3 cut(s)	54, 158, 224
HpaII	CCGG	3 cut(s)	36, 70, 133
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	43, 333
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	3 cut(s)	101, 118, 178
HpyCH4V	TGCA	3 cut(s)	121, 247, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	244, 275
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	289
LguI	GCTCTTC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	135, 318
LpnPI	CCDG	5 cut(s)	49, 71, 83, 98, 146
Lsp1109I	GCAGC	2 cut(s)	133, 292
LweI	GCATC	1 cut(s)	324
MabI	ACCWGGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	5 cut(s)	21, 172, 227, 233, 320
MhlI	GDGCHC	1 cut(s)	81
MlyI	GAGTC	3 cut(s)	63, 152, 233
MnlI	CCTC	6 cut(s)	31, 52, 121, 147, 181, 327
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	48
MspI	CCGG	3 cut(s)	36, 70, 133
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	127
NaeI	GCCGGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	289
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	244, 275
NlaIV	GGNNCC	2 cut(s)	131, 140
PciSI	GCTCTTC	1 cut(s)	4
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	123, 266, 307
PleI	GAGTC	3 cut(s)	62, 152, 232
PpsI	GAGTC	3 cut(s)	62, 152, 232
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	131, 140
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	4
SatI	GCNGC	3 cut(s)	122, 265, 306
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	63, 152, 233
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	3 cut(s)	63, 87, 253
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	64
SsiI	CCGC	5 cut(s)	47, 67, 136, 265, 293
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	101, 118, 178
TaqI	TCGA	3 cut(s)	52, 57, 75
TauI	GCSGC	1 cut(s)	267
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	2 cut(s)	121, 305
TspGWI	ACGGA	3 cut(s)	15, 131, 156
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.