Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005072

Physical Location & Seq

Genomic Coordinates Forward (+)

79458473 .. 79463172

Gene Structure 4700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGCTCGCCTCTTTCTTCTTCAAAGTCCGGAAACGCTTTCACGGTCTCTCGATCTTGTTATCTCACAGCCTTTCAATGCGCTTTGCGTCGGAATGGAGTCACCACCTTCATGGATGATCCGCTTGTTATTGCCGCACCGCTTCCTCCAAATGTTCTTCCGGATGCTAAGAACTTGAGGTGGACACTCGTGGTGGGTTCACATCTTCCCGAAGGTAGTCGTTCTCGAGATGGTGGTAAAACCACGGGGTCACCTAAGAGAGGTGTTGGGAGATTGACGAAATTATCGACACGGTCAACCATGGTCAATGCAAGTTTGAGAGCGAAACCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

111

Amino Acids

11.82

Weight (kDa)

10.92

Isoelectric Point (pI)

67.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05510 AT3G05510
fragaria_vesca	FvH4_6g06570
malus_domestica	MD04G1200600.v1.1 MD12G1213100.v1.1
prunus_persica	Prupe.2G037700_v2.0.a1 Prupe.6G320700_v2.0.a1 Prupe.6G320700_v2.0.a1
pyrus_communis	pycom04g17680 pycom12g19900
rosa_chinensis	RchiOBHm_Chr1g0322071 RchiOBHm_Chr1g0322081 RchiOBHm_Chr1g0322141 RchiOBHm_Chr3g0455731
rosa_laevigata	RLG00000025335
rosa_multiflora	Rmu_sc0002883.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141120 Rroxscaffold_5G00351290 Rroxscaffold_6G00423510 Rroxscaffold_6G00424010
rosa_rugosa	Rorug03G0009600
rosa_samantha	Rh1AG049300 Rh1AG049900 Rh3AG069200 Rh3BG071700 Rh3CG070000 Rh3DG072400
rosa_wichuraiana	Rw1G004550 Rw3G005590 Rw3G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	29, 160
AciI	CCGC	3 cut(s)	122, 135, 140
AclWI	GGATC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	24, 77
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	225
Aor13HI	TCCGGA	2 cut(s)	29, 160
AspLEI	GCGC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	94, 243
AvaI	CYCGRG	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	334
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	154
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	243, 300
BsaWI	WCCGGW	2 cut(s)	29, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseAI	TCCGGA	2 cut(s)	29, 160
BseDI	CCNNGG	2 cut(s)	243, 300
BseGI	GGATG	2 cut(s)	121, 169
BseLI	CCNNNNNNNGG	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	30, 161
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	2 cut(s)	29, 160
Bsp143I	GATC	2 cut(s)	53, 118
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	3 cut(s)	122, 135, 140
BspEI	TCCGGA	2 cut(s)	29, 160
BspPI	GGATC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	243, 300
BssMI	GATC	2 cut(s)	53, 118
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	46, 294
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	168, 255
BstDSI	CCRYGG	2 cut(s)	243, 300
BstEII	GGTNACC	1 cut(s)	249
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	121, 169
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	56, 121
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	53, 118
BstPI	GGTNACC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	112
BtgI	CCRYGG	2 cut(s)	243, 300
BtsCI	GGATG	2 cut(s)	121, 169
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	1 cut(s)	83
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	112, 301
CviJI	RGCY	2 cut(s)	6, 71
CviKI_1	RGCY	2 cut(s)	6, 71
DdeI	CTNAG	2 cut(s)	168, 255
DpnI	GATC	2 cut(s)	55, 120
DpnII	GATC	2 cut(s)	53, 118
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO65I	GGTNACC	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	115, 304
FaiI	YATR	2 cut(s)	113, 302
FatI	CATG	2 cut(s)	111, 300
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	128, 176
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	334
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	135
HapII	CCGG	2 cut(s)	30, 161
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	115, 304
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	2 cut(s)	30, 161
HphI	GGTGA	2 cut(s)	94, 243
Hpy166II	GTNNAC	3 cut(s)	183, 200, 297
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	6 cut(s)	30, 51, 161, 209, 225, 227
Hpy8I	GTNNAC	3 cut(s)	183, 200, 297
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	118, 206
HpyCH4III	ACNGT	2 cut(s)	46, 294
HpyCH4V	TGCA	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	168, 255
Hsp92II	CATG	2 cut(s)	115, 304
HspAI	GCGC	1 cut(s)	81
Kpn2I	TCCGGA	2 cut(s)	29, 160
Kzo9I	GATC	2 cut(s)	53, 118
LpnPI	CCDG	2 cut(s)	43, 174
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	334
MaeIII	GTNAC	2 cut(s)	100, 249
MalI	GATC	2 cut(s)	55, 120
MboI	GATC	2 cut(s)	53, 118
MboII	GAAGA	4 cut(s)	9, 12, 149, 197
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	21, 156, 171, 254
MroI	TCCGGA	2 cut(s)	29, 160
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	2 cut(s)	30, 161
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	53, 118
NlaIII	CATG	2 cut(s)	115, 304
NmuCI	GTSAC	2 cut(s)	100, 249
PaeR7I	CTCGAG	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	53, 118
SchI	GAGTC	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 110, 182, 217, 256, 265
SfaNI	GCATC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	175, 225
SmoI	CTYRAG	2 cut(s)	175, 225
Sse9I	AATT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	122, 135, 140
SspMI	CTAG	1 cut(s)	334
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	46, 294
TaqI	TCGA	3 cut(s)	52, 226, 287
TasI	AATT	1 cut(s)	281
TauI	GCSGC	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	100, 249
Tsp45I	GTSAC	2 cut(s)	100, 249
TspDTI	ATGAA	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	225
XspI	CTAG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.