Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005072

Physical Location & Seq

Genomic Coordinates Reverse (-)

8323005 .. 8324235

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG049300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTGCTGCGAGGGTTGAGCGCGGAGATCTGTGGAAGAGCAACGCCCTCTCCGTACAGCGCTGGCTCAGGGAGCAATTCAGAGTCGAGGTGGACCGCCGATTCAGGCACCACCCGATTTTCTCCGACGGCTACTTCGCCTCCACCGTGCAGCGGTGGCTCCAGCGGTTCCGTGATTTCAAGAGAGACTCGCTTCCGTCTTCTATCGCAAACGAGGTCTATGGTTCAGAAAAATTACATGACGCATTGCTACGCAGACCCAAAGACATGCCTCTTATAACGGTTAGCAATCATGTGGCTTCTATGGATGATCCGCTTGTTATTGCTGCACTGATTCCTCCAAATGTTCTTCTGGATGCTAAGAACTTGAGGTGGACACTGTGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

129

Amino Acids

15.06

Weight (kDa)

9.88

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05510 AT3G05510
fragaria_vesca	FvH4_6g06570
malus_domestica	MD04G1200600.v1.1 MD12G1213100.v1.1
prunus_persica	Prupe.2G037700_v2.0.a1 Prupe.6G320700_v2.0.a1 Prupe.6G320700_v2.0.a1
pyrus_communis	pycom04g17680 pycom12g19900
rosa_chinensis	RchiOBHm_Chr1g0322071 RchiOBHm_Chr1g0322081 RchiOBHm_Chr1g0322141 RchiOBHm_Chr3g0455731
rosa_laevigata	RLG00000025335
rosa_multiflora	Rmu_sc0002883.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141120 Rroxscaffold_5G00351290 Rroxscaffold_6G00423510 Rroxscaffold_6G00424010
rosa_rugosa	Rorug03G0009600
rosa_samantha	Rh1AG049300 Rh1AG049900 Rh3AG069200 Rh3BG071700 Rh3CG070000 Rh3DG072400
rosa_wichuraiana	Rw1G004550 Rw3G005590 Rw3G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	108
AccII	CGCG	1 cut(s)	24
AciI	CCGC	5 cut(s)	24, 97, 154, 166, 314
AclWI	GGATC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	57
AfeI	AGCGCT	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	305
Aor51HI	AGCGCT	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	5, 8, 151, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	2 cut(s)	24, 63
AspS9I	GGNCC	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	163, 313
BceAI	ACGGC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	64
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	4 cut(s)	6, 9, 152, 327
BlsI	GCNGC	4 cut(s)	7, 10, 153, 328
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	3 cut(s)	110, 161, 170
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	313, 361
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	163, 313
BsgI	GTGCAG	2 cut(s)	170, 312
Bsh1236I	CGCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	28, 310
BspACI	CCGC	5 cut(s)	24, 97, 154, 166, 314
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	110, 161, 170
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	245
BssMI	GATC	2 cut(s)	28, 310
Bst4CI	ACNGT	3 cut(s)	148, 283, 381
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	68, 360
BstF5I	GGATG	2 cut(s)	313, 361
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	24, 63
BstKTI	GATC	2 cut(s)	31, 313
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	28, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 157
BstNSI	RCATGY	1 cut(s)	271
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	163, 313
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	313, 361
BtsIMutI	CAGTG	2 cut(s)	329, 377
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	2 cut(s)	24, 63
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	3 cut(s)	239, 268, 293
CviJI	RGCY	5 cut(s)	5, 67, 132, 160, 299
CviKI_1	RGCY	5 cut(s)	5, 67, 132, 160, 299
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	68, 360
DpnI	GATC	2 cut(s)	30, 312
DpnII	GATC	2 cut(s)	28, 310
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	94
Eco47III	AGCGCT	1 cut(s)	62
FaeI	CATG	3 cut(s)	242, 271, 296
FaiI	YATR	6 cut(s)	222, 240, 269, 278, 294, 305
FatI	CATG	3 cut(s)	238, 267, 292
Fnu4HI	GCNGC	4 cut(s)	6, 9, 152, 327
FokI	GGATG	2 cut(s)	320, 368
Fsp4HI	GCNGC	4 cut(s)	6, 9, 152, 327
GlaI	GCGC	2 cut(s)	23, 62
GluI	GCNGC	4 cut(s)	6, 9, 152, 327
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	64
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	24, 63
Hin1II	CATG	3 cut(s)	242, 271, 296
Hin6I	GCGC	2 cut(s)	22, 61
HinP1I	GCGC	2 cut(s)	22, 61
HinfI	GANTC	4 cut(s)	84, 102, 188, 334
Hpy166II	GTNNAC	2 cut(s)	94, 375
Hpy188I	TCNGA	4 cut(s)	83, 127, 229, 389
Hpy188III	TCNNGA	2 cut(s)	181, 353
Hpy8I	GTNNAC	2 cut(s)	94, 375
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	3 cut(s)	148, 283, 381
HpyCH4V	TGCA	3 cut(s)	151, 329, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 157
HpyF3I	CTNAG	2 cut(s)	68, 360
Hsp92II	CATG	3 cut(s)	242, 271, 296
HspAI	GCGC	2 cut(s)	22, 61
Kzo9I	GATC	2 cut(s)	28, 310
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	73, 165
LpnPI	CCDG	5 cut(s)	49, 55, 91, 176, 338
Lsp1109I	GCAGC	2 cut(s)	163, 313
LweI	GCATC	1 cut(s)	346
MalI	GATC	2 cut(s)	30, 312
MboI	GATC	2 cut(s)	28, 310
MboII	GAAGA	3 cut(s)	49, 192, 341
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	2 cut(s)	77, 233
MlyI	GAGTC	2 cut(s)	93, 182
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	6, 59, 82, 151, 208, 282, 348, 363
MspA1I	CMGCKG	2 cut(s)	154, 166
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	73, 157
NdeII	GATC	2 cut(s)	28, 310
NlaIII	CATG	3 cut(s)	242, 271, 296
NlaIV	GGNNCC	3 cut(s)	110, 161, 170
NspI	RCATGY	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 144
PfeI	GAWTC	2 cut(s)	102, 334
PkrI	GCNGC	4 cut(s)	7, 10, 153, 328
PleI	GAGTC	2 cut(s)	92, 182
PpsI	GAGTC	2 cut(s)	92, 182
PsiI	TTATAA	1 cut(s)	278
PspN4I	GGNNCC	3 cut(s)	110, 161, 170
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	32
SatI	GCNGC	4 cut(s)	6, 9, 152, 327
Sau3AI	GATC	2 cut(s)	28, 310
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	2 cut(s)	93, 182
SetI	ASST	3 cut(s)	93, 219, 374
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	2 cut(s)	77, 233
SsiI	CCGC	5 cut(s)	24, 97, 154, 166, 314
TaaI	ACNGT	3 cut(s)	148, 283, 381
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	77, 233
TfiI	GAWTC	2 cut(s)	102, 334
TscAI	CASTG	2 cut(s)	336, 384
TseI	GCWGC	4 cut(s)	5, 8, 151, 326
TspGWI	ACGGA	3 cut(s)	43, 161, 186
TspRI	CASTG	2 cut(s)	336, 384
VpaK11BI	GGWCC	1 cut(s)	94
XceI	RCATGY	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.