MD12G1213100.v1.1

cardiolipin acyl-chain remodeling

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
29160804 .. 29163981
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1213100.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGGCTGCTGCGAGGGTTGAGCGTGGCGATCTATGGAAGAGCAAGGCATTATCGGTACAGCTCCGGCTCAGGCAGCGGTTCAGGGTGGAGGTGGATCGCCGCCTCCGTCACCACCCCATTTTTTCCAACGATGGTTACTTCTCCTCCACGTTCCAGCGCTGGCTCCAGCGCTTTCGCGACTTCCGCCGTGACTCCCTCCCTTCTTCCACCACCTTCTATCTCAAACGAGTGGGTAAGGAATTCAATGCTGAAGAAGAATCAATCATTCTACGCATGCTTCAAGCTGTGGCTGTTCCGGTCATTGGCAATGTTTGTCATGTGTTTATGAATGGATTGAATCAGGTTCAGGTGTATGGTGTAGAAAAATTACATGATGCCGTGCTACGCAGACCCAAGGGAAAGCCTCTTATAACGGTGAGCAATCATGTTGCTTCTATGGATGACCCGCTTGTCCTCTCCACATTACTTCCTCGACATGTTCTTCTGGATGTTCAGAACTTGAGGTGGACACTTTGCGCGTCTGATCGTTGTTTTTCAAATCCTGTAACTTCAGCATTTTTCCGATCTGTCAAAGTGCTGCCAGTTTCTCGTGGTGATGGGATTTATCAAAAGGGAATGGACTTGGCTATTTCAAAGTTGAATCAAGGTGGTTGGGTTCACATCTTCCCAGAAGGTAGTCGTTCTCGAGATGGTGGAAAAACCATTGGGTCTTCCAAGAGAGGTGTTGGGAGGTTGGTCCTTGACGCTGACAATATTCCCATGGTTGTTCCATTTGTGCATAGTGGGATGCAGGACATCATGCCTATCGGTGCTAGCATCCCAAGGATTGGTAATACAGTGACGGTAGTTATTGGCGATCCAATCTACTTTGATGATTTGTTGAATTCTGAAGGAGCTAAGCATGTATCAAGAGGAAAGTTGTACGATGCAGTATCTTCAAGGATTGGTCATAGACTACGCGAACTGAAAGTTCAGGTCGACAAGTTGGCTCAAGTGACTCAGCCACAAAATCTTCCTGTGCAGGACACAGACCGAGCTACAGTGATTCTGCAGCAGGTTGATTGGGAATCATTCGGAATGGGGAACCTTACATATTCCGAAGATGATGGTTCAGCGGTGCAAGAAACTGAGATCCAACTAGCTGCTCCTCCCTATACAGAAGAACCCCAGTCTGCTGATTGGAGTTACAGAGTGGGTTTCTCTCGTGAAGGTGGCATTGCATCACGGATGCGTTGTTTCATGGACCAGAGTGAGTTTATGGGTTTCGCAGCCAGAGGCATATTTATGAACCGTAGAGCCGAAGAACCCTCTCCGAGCGGTAGAGGGGTTGCCCCCTTGAAGGCGTGGAGACGATACTTGGAGGCCAATGTATTACCACAATGGAATTAG

Protein Analysis

463

Amino Acids

52.01

Weight (kDa)

9.53

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 115 - 259 6e-18 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AasI GACNNNNNNGTC 1 cut(s) 449
Acc36I ACCTGC 1 cut(s) 1045
AccB7I CCANNNNNTGG 1 cut(s) 827
AccBSI CCGCTC 1 cut(s) 1317
AccI GTMKAC 1 cut(s) 978
AccII CGCG 3 cut(s) 177, 518, 960
AciI CCGC 6 cut(s) 76, 100, 184, 446, 1115, 1317
AclWI GGATC 3 cut(s) 102, 851, 1126
AcsI RAATTY 2 cut(s) 239, 883
AcuI CTGAAG 3 cut(s) 270, 534, 909
AfaI GTAC 2 cut(s) 57, 923
AfeI AGCGCT 2 cut(s) 158, 170
AfiI CCNNNNNNNGG 3 cut(s) 302, 827, 1339
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 9 cut(s) 244, 281, 337, 537, 633, 640, 883, 939, 1339
AluBI AGCT 5 cut(s) 61, 284, 896, 1037, 1142
AluI AGCT 5 cut(s) 61, 284, 896, 1037, 1142
Alw26I GTCTC 1 cut(s) 1342
AlwI GGATC 3 cut(s) 102, 851, 1126
Ama87I CYCGRG 1 cut(s) 684
Aor51HI AGCGCT 2 cut(s) 158, 170
AoxI GGCC 1 cut(s) 1362
ApeKI GCWGC 7 cut(s) 5, 8, 73, 577, 1051, 1142, 1268
ApoI RAATTY 2 cut(s) 239, 883
AspLEI GCGC 3 cut(s) 159, 171, 518
AspS9I GGNCC 2 cut(s) 736, 1243
AsuHPI GGTGA 3 cut(s) 101, 427, 605
AsuNHI GCTAGC 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 684
AvaII GGWCC 2 cut(s) 736, 1243
BauI CACGAG 2 cut(s) 588, 1203
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 5 cut(s) 85, 564, 1063, 1129, 1280
BccI CCATC 4 cut(s) 125, 590, 683, 1100
BceAI ACGGC 2 cut(s) 171, 362
BcoDI GTCTC 1 cut(s) 1342
BfaI CTAG 2 cut(s) 813, 1139
BfmI CTRYAG 2 cut(s) 1038, 1049
BfoI RGCGCY 2 cut(s) 160, 172
BfuAI ACCTGC 1 cut(s) 1045
BisI GCNGC 8 cut(s) 6, 9, 74, 100, 578, 1052, 1143, 1269
BlpI GCTNAGC 1 cut(s) 897
BlsI GCNGC 8 cut(s) 7, 10, 75, 101, 579, 1053, 1144, 1270
Bme18I GGWCC 2 cut(s) 736, 1243
BmeT110I CYCGRG 1 cut(s) 684
BmgT120I GGNCC 2 cut(s) 736, 1243
BmiI GGNNCC 2 cut(s) 164, 1085
BmrI ACTGGG 1 cut(s) 1162
BmsI GCATC 6 cut(s) 364, 777, 825, 916, 1218, 1229
BmtI GCTAGC 1 cut(s) 816
BmuI ACTGGG 1 cut(s) 1162
BpiI GAAGAC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 520, 975
BsaJI CCNNGG 3 cut(s) 393, 759, 821
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 827, 1339
Bse1I ACTGG 2 cut(s) 581, 1168
Bse3DI GCAATG 2 cut(s) 313, 1215
BseDI CCNNGG 3 cut(s) 393, 759, 821
BseGI GGATG 5 cut(s) 445, 493, 792, 816, 1233
BseLI CCNNNNNNNGG 3 cut(s) 302, 827, 1339
BseMI GCAATG 2 cut(s) 313, 1215
BseMII CTCAG 3 cut(s) 82, 1013, 1119
BseNI ACTGG 2 cut(s) 581, 1168
BseRI GAGGAG 2 cut(s) 133, 1137
BseXI GCAGC 5 cut(s) 85, 564, 1063, 1129, 1280
BsgI GTGCAG 1 cut(s) 1040
Bsh1236I CGCG 3 cut(s) 177, 518, 960
BshFI GGCC 1 cut(s) 1364
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 2 cut(s) 64, 296
BslI CCNNNNNNNGG 3 cut(s) 302, 827, 1339
BsmAI GTCTC 1 cut(s) 1342
BsmBI CGTCTC 1 cut(s) 1342
BsnI GGCC 1 cut(s) 1364
BsoBI CYCGRG 1 cut(s) 684
Bsp143I GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
Bsp1720I GCTNAGC 1 cut(s) 897
Bsp19I CCATGG 1 cut(s) 759
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 6 cut(s) 76, 100, 184, 446, 1115, 1317
BspANI GGCC 1 cut(s) 1364
BspCNI CTCAG 3 cut(s) 81, 1012, 1120
BspFNI CGCG 3 cut(s) 177, 518, 960
BspLI GGNNCC 2 cut(s) 164, 1085
BspMAI CTGCAG 1 cut(s) 1053
BspMI ACCTGC 1 cut(s) 1045
BspOI GCTAGC 1 cut(s) 816
BspPI GGATC 3 cut(s) 102, 851, 1126
BspQI GCTCTTC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 1317
BsrDI GCAATG 2 cut(s) 313, 1215
BsrI ACTGG 2 cut(s) 581, 1168
BssECI CCNNGG 3 cut(s) 393, 759, 821
BssMI GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
BssSI CACGAG 2 cut(s) 588, 1203
BssT1I CCWWGG 3 cut(s) 393, 759, 821
Bst2BI CACGAG 2 cut(s) 588, 1203
Bst4CI ACNGT 5 cut(s) 415, 838, 844, 1042, 1292
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 161, 275, 814
BstDEI CTNAG 4 cut(s) 68, 897, 999, 1128
BstDSI CCRYGG 1 cut(s) 759
BstF5I GGATG 5 cut(s) 445, 493, 792, 816, 1233
BstFNI CGCG 3 cut(s) 177, 518, 960
BstH2I RGCGCY 2 cut(s) 160, 172
BstHHI GCGC 3 cut(s) 159, 171, 518
BstKTI GATC 6 cut(s) 31, 97, 526, 566, 859, 1134
BstMAI GTCTC 1 cut(s) 1342
BstMBI GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
BstMWI GCNNNNNNNGC 2 cut(s) 73, 183
BstNSI RCATGY 3 cut(s) 277, 479, 905
BstSFI CTRYAG 2 cut(s) 1038, 1049
BstUI CGCG 3 cut(s) 177, 518, 960
BstV1I GCAGC 5 cut(s) 85, 564, 1063, 1129, 1280
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 1131
BstYI RGATCY 1 cut(s) 1131
BsuRI GGCC 1 cut(s) 1364
BtgI CCRYGG 1 cut(s) 759
BtsCI GGATG 5 cut(s) 445, 493, 792, 816, 1233
BtsIMutI CAGTG 2 cut(s) 843, 1047
BtuMI TCGCGA 1 cut(s) 177
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 3 cut(s) 161, 275, 814
CfoI GCGC 3 cut(s) 159, 171, 518
Cfr13I GGNCC 2 cut(s) 736, 1243
CseI GACGC 2 cut(s) 507, 752
Csp6I GTAC 2 cut(s) 56, 922
CviAII CATG 9 cut(s) 274, 317, 371, 425, 476, 760, 799, 902, 1240
CviQI GTAC 2 cut(s) 56, 922
DdeI CTNAG 4 cut(s) 68, 897, 999, 1128
DpnI GATC 6 cut(s) 30, 96, 525, 565, 858, 1133
DpnII GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 3 cut(s) 393, 759, 821
Eco47I GGWCC 2 cut(s) 736, 1243
Eco47III AGCGCT 2 cut(s) 158, 170
Eco57I CTGAAG 3 cut(s) 270, 534, 909
Eco88I CYCGRG 1 cut(s) 684
EcoRI GAATTC 2 cut(s) 239, 883
EcoT14I CCWWGG 3 cut(s) 393, 759, 821
ErhI CCWWGG 3 cut(s) 393, 759, 821
Esp3I CGTCTC 1 cut(s) 1342
FaeI CATG 9 cut(s) 277, 320, 374, 428, 479, 763, 802, 905, 1243
FatI CATG 9 cut(s) 273, 316, 370, 424, 475, 759, 798, 901, 1239
FauI CCCGC 1 cut(s) 453
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 8 cut(s) 6, 9, 74, 100, 578, 1052, 1143, 1269
FokI GGATG 5 cut(s) 452, 500, 799, 803, 1240
Fsp4HI GCNGC 8 cut(s) 6, 9, 74, 100, 578, 1052, 1143, 1269
FspBI CTAG 2 cut(s) 813, 1139
GlaI GCGC 3 cut(s) 158, 170, 517
GluI GCNGC 8 cut(s) 6, 9, 74, 100, 578, 1052, 1143, 1269
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 160, 172
HaeIII GGCC 1 cut(s) 1364
HapII CCGG 2 cut(s) 64, 296
HgaI GACGC 2 cut(s) 507, 752
HhaI GCGC 3 cut(s) 159, 171, 518
Hin1II CATG 9 cut(s) 277, 320, 374, 428, 479, 763, 802, 905, 1243
Hin6I GCGC 3 cut(s) 157, 169, 516
HinP1I GCGC 3 cut(s) 157, 169, 516
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HinfI GANTC 7 cut(s) 191, 257, 337, 640, 997, 1045, 1067
HpaII CCGG 2 cut(s) 64, 296
HphI GGTGA 3 cut(s) 101, 427, 605
Hpy166II GTNNAC 3 cut(s) 507, 658, 979
Hpy188I TCNGA 7 cut(s) 495, 523, 563, 889, 1076, 1099, 1314
Hpy188III TCNNGA 6 cut(s) 176, 485, 684, 686, 909, 1205
Hpy8I GTNNAC 3 cut(s) 507, 658, 979
HpyAV CCTTC 6 cut(s) 210, 223, 665, 884, 1202, 1333
HpyCH4III ACNGT 5 cut(s) 415, 838, 844, 1042, 1292
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 7 cut(s) 778, 790, 929, 1021, 1051, 1120, 1220
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 183
HpyF3I CTNAG 4 cut(s) 68, 897, 999, 1128
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 9 cut(s) 277, 320, 374, 428, 479, 763, 802, 905, 1243
HspAI GCGC 3 cut(s) 157, 169, 516
Kzo9I GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 4 cut(s) 66, 168, 893, 1150
Lsp1109I GCAGC 5 cut(s) 85, 564, 1063, 1129, 1280
LweI GCATC 6 cut(s) 364, 777, 825, 916, 1218, 1229
MaeI CTAG 2 cut(s) 813, 1139
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 7 cut(s) 107, 134, 188, 544, 838, 994, 1184
MalI GATC 6 cut(s) 30, 96, 525, 565, 858, 1133
MbiI CCGCTC 1 cut(s) 1317
MboI GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
MflI RGATCY 1 cut(s) 1131
MluCI AATT 4 cut(s) 239, 365, 883, 1384
MlyI GAGTC 2 cut(s) 185, 991
MmeI TCCRAC 2 cut(s) 150, 1159
MslI CAYNNNNRTG 1 cut(s) 1283
MspA1I CMGCKG 2 cut(s) 76, 1115
MspI CCGG 2 cut(s) 64, 296
MvnI CGCG 3 cut(s) 177, 518, 960
MwoI GCNNNNNNNGC 2 cut(s) 73, 183
NcoI CCATGG 1 cut(s) 759
NdeII GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
NheI GCTAGC 1 cut(s) 812
NlaIII CATG 9 cut(s) 277, 320, 374, 428, 479, 763, 802, 905, 1243
NlaIV GGNNCC 2 cut(s) 164, 1085
NmuCI GTSAC 4 cut(s) 107, 188, 838, 994
NruI TCGCGA 1 cut(s) 177
NspI RCATGY 3 cut(s) 277, 479, 905
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 684
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 5 cut(s) 257, 337, 640, 1045, 1067
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 8 cut(s) 7, 10, 75, 101, 579, 1053, 1144, 1270
PleI GAGTC 2 cut(s) 185, 991
PpsI GAGTC 2 cut(s) 185, 991
PscI ACATGT 1 cut(s) 475
PsiI TTATAA 1 cut(s) 410
PspN4I GGNNCC 2 cut(s) 164, 1085
PspPI GGNCC 2 cut(s) 736, 1243
PstI CTGCAG 1 cut(s) 1053
PsuI RGATCY 1 cut(s) 1131
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 2 cut(s) 57, 923
RsaNI GTAC 2 cut(s) 56, 922
RseI CAYNNNNRTG 1 cut(s) 1283
SalI GTCGAC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 32
SatI GCNGC 8 cut(s) 6, 9, 74, 100, 578, 1052, 1143, 1269
Sau3AI GATC 6 cut(s) 28, 94, 523, 563, 856, 1131
Sau96I GGNCC 2 cut(s) 736, 1243
SchI GAGTC 2 cut(s) 185, 991
SfaNI GCATC 6 cut(s) 364, 777, 825, 916, 1218, 1229
SfcI CTRYAG 2 cut(s) 1038, 1049
Sfr274I CTCGAG 1 cut(s) 684
SinI GGWCC 2 cut(s) 736, 1243
SlaI CTCGAG 1 cut(s) 684
SmiMI CAYNNNNRTG 1 cut(s) 1283
SmlI CTYRAG 3 cut(s) 499, 684, 990
SmoI CTYRAG 3 cut(s) 499, 684, 990
SphI GCATGC 1 cut(s) 277
Sse9I AATT 4 cut(s) 239, 365, 883, 1384
SsiI CCGC 6 cut(s) 76, 100, 184, 446, 1115, 1317
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 813, 1139
StyI CCWWGG 3 cut(s) 393, 759, 821
TaaI ACNGT 5 cut(s) 415, 838, 844, 1042, 1292
TaiI ACGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 472, 685, 978
TaqII GACCGA 1 cut(s) 1047
TasI AATT 4 cut(s) 239, 365, 883, 1384
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 5 cut(s) 257, 337, 640, 1045, 1067
TscAI CASTG 2 cut(s) 843, 1047
TseFI GTSAC 4 cut(s) 107, 188, 838, 994
TseI GCWGC 7 cut(s) 5, 8, 73, 577, 1051, 1142, 1268
Tsp45I GTSAC 4 cut(s) 107, 188, 838, 994
TspDTI ATGAA 3 cut(s) 341, 1228, 1301
TspGWI ACGGA 2 cut(s) 95, 1240
TspRI CASTG 2 cut(s) 843, 1047
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 736, 1243
XapI RAATTY 2 cut(s) 239, 883
XceI RCATGY 3 cut(s) 277, 479, 905
XhoI CTCGAG 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 2 cut(s) 813, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.