pycom04g17680

cardiolipin acyl-chain remodeling

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
19977485 .. 19981261
3777 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17680.7

Sequence Viewer

Length: 1389 bp
ATGGCTGCTGCGAGGGTTGAGCGTGGCGATCTATGGAAGAGCAAGGCCCTGTCGGTGCAGCTGCGGCTCAGGCAGCGGTTCAGGGTGGAGGTGGATCGCCGCCTCCGGCACCACCCCATTTTTTCCAACGACGGTTACTTCTCCTCCACATTGCAGCGCTGGCTCGAGCGCTTTCGCGACTTCCGCCGTGATTCCCTCCCTTCTTCCACCGCCTTCTACCGCAAACGAGTGGGTAAGGAATTCAATGCTGAAGAAGAATCAATCCTTCTACGCATGCTTCAAGCTGTGGCTGTTCCGGTCATTGGCAGTGTTTGTCATGTGTTTATGAATGGATTGAATCAGGTTCAGGTGTATGGTGTAGAAAAATTACATGATGCTGTACTACGCAGACCCAAAGGCAAGCCTCTTATAACGGTCAGCAATCATGTTGCTTCTATGGATGATCCGCTTGTTCTCTCTGCGTTGCTTCCTCGACATGTTCTTCTCGATGCTCAGAACTTGAGGTGGACACTTTGTGCGTCTGATCGTTGTTTTGCAAATCCTGTAACTTCAGCATTTTTTCAATCTGTCAAAGTCCTGCCAGTTTCTCGTGGTGATGGGATTTATCAAAAGGGAATGGACGCGGCTATTTCAAAATTGAATCAAGGTGGTTGGGTTCACATCTTCCCAGAAGGTAGTCGTTCTCGAGATGGTGGAAAAACCATGGGGTCTTCCAAGAGAGGTGTCGGGAGGTTGGTCCTTGACGCCGACAATATTCCCATGGTTGTTCCATTTGTGCATAGCGGGATGCAGGACATTATGCCTATTGGTGCTAGCATCCCAAGGATAGGCAATATGGTGACGGTGGTTATTGGCGATCCAATCTACTTTGATGATTTGTTGAATTCTGAAGGAGCTAAGCATGTATCAAGAGGAAAGCTGTACGATGCTGTATCTTCAAGGATTGGTCATAGACTAAGCGAACTGAAAGTTCAGGTCGACAAATTAGCTCAAGTAACTCGGTCACAAAATCTTCCTGCGCAGAACACAGACCGAGCTGCAGTGATTTTGCAGCATGTTGATTGGGAATTATTCGGAATGGGGATCCTTACACCTTCCGAAGATGATGGTTCACCGCTGCAAGAAACTGAGATCCAACTAGCTGCTCCTCCCCATACACAAGAACCCCGGCCTGCTGATTGGAGTTACAGAGTGGATTTCTCTCGTGAAGGTGGCTTTGCATCACGGATGCGTAGTTTCATGGACCAGAGTGAGTTTATGGGTTTCGCAGCTAGAGGCATATTTATGAACCGTAGAGTCCAAGAAACCTCTCCGAGCGGTAGCGGGGTTGGTCCGTTGAAAGCATGGAGACGATACTTGGAGGCCAATGTATTACCACAATGGAATTAG

Protein Analysis

463

Amino Acids

51.8

Weight (kDa)

9.7

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
Acc16I TGCGCA 1 cut(s) 1020
AccB1I GGYRCC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 1317
AccI GTMKAC 1 cut(s) 978
AccII CGCG 2 cut(s) 177, 623
AclWI GGATC 6 cut(s) 102, 437, 851, 1078, 1091, 1126
AcsI RAATTY 2 cut(s) 239, 883
AcuI CTGAAG 3 cut(s) 270, 534, 909
AcyI GRCGYC 1 cut(s) 744
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 2 cut(s) 381, 923
AfeI AGCGCT 2 cut(s) 158, 170
AfiI CCNNNNNNNGG 2 cut(s) 302, 827
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 9 cut(s) 244, 281, 337, 563, 633, 640, 883, 939, 1339
AluBI AGCT 8 cut(s) 61, 284, 896, 919, 989, 1037, 1142, 1271
AluI AGCT 8 cut(s) 61, 284, 896, 919, 989, 1037, 1142, 1271
Alw26I GTCTC 1 cut(s) 1342
AlwI GGATC 6 cut(s) 102, 437, 851, 1078, 1091, 1126
Ama87I CYCGRG 2 cut(s) 164, 684
Aor51HI AGCGCT 2 cut(s) 158, 170
AoxI GGCC 3 cut(s) 45, 1169, 1362
ApoI RAATTY 2 cut(s) 239, 883
AspLEI GCGC 3 cut(s) 159, 171, 1021
AspS9I GGNCC 4 cut(s) 46, 736, 1243, 1331
AsuC2I CCSGG 1 cut(s) 1168
AsuHPI GGTGA 3 cut(s) 605, 850, 1104
AsuNHI GCTAGC 1 cut(s) 812
AvaI CYCGRG 2 cut(s) 164, 684
AvaII GGWCC 3 cut(s) 736, 1243, 1331
BamHI GGATCC 1 cut(s) 1083
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 2 cut(s) 588, 1203
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 9 cut(s) 48, 70, 85, 166, 1024, 1063, 1104, 1129, 1280
BccI CCATC 3 cut(s) 590, 683, 1100
BceAI ACGGC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 1168
BcoDI GTCTC 1 cut(s) 1342
BfaI CTAG 3 cut(s) 813, 1139, 1272
BfmI CTRYAG 1 cut(s) 1038
BfoI RGCGCY 2 cut(s) 160, 172
BlpI GCTNAGC 1 cut(s) 897
Bme1390I CCNGG 1 cut(s) 1168
Bme18I GGWCC 3 cut(s) 736, 1243, 1331
BmeT110I CYCGRG 2 cut(s) 164, 684
BmgT120I GGNCC 4 cut(s) 46, 736, 1243, 1331
BmiI GGNNCC 2 cut(s) 110, 1085
BmrFI CCNGG 1 cut(s) 1168
BmsI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
BmtI GCTAGC 1 cut(s) 816
BpiI GAAGAC 1 cut(s) 702
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 520, 975
BpuMI CCSGG 1 cut(s) 1168
BsaHI GRCGYC 1 cut(s) 744
BsaJI CCNNGG 4 cut(s) 702, 759, 821, 1166
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 827
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 4 cut(s) 702, 759, 821, 1166
BseGI GGATG 4 cut(s) 445, 792, 816, 1233
BseLI CCNNNNNNNGG 2 cut(s) 302, 827
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 3 cut(s) 82, 506, 1119
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 2 cut(s) 133, 1137
BseXI GCAGC 9 cut(s) 48, 70, 85, 166, 1024, 1063, 1104, 1129, 1280
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 2 cut(s) 177, 623
BshFI GGCC 3 cut(s) 47, 1171, 1364
BshNI GGYRCC 1 cut(s) 108
BsiHKCI CYCGRG 2 cut(s) 164, 684
BsiSI CCGG 3 cut(s) 106, 296, 1168
BslI CCNNNNNNNGG 2 cut(s) 302, 827
BsmAI GTCTC 1 cut(s) 1342
BsmBI CGTCTC 1 cut(s) 1342
BsnI GGCC 3 cut(s) 47, 1171, 1364
BsoBI CYCGRG 2 cut(s) 164, 684
Bsp143I GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
Bsp1720I GCTNAGC 1 cut(s) 897
Bsp19I CCATGG 2 cut(s) 702, 759
Bsp68I TCGCGA 1 cut(s) 177
BspANI GGCC 3 cut(s) 47, 1171, 1364
BspCNI CTCAG 3 cut(s) 81, 505, 1120
BspFNI CGCG 2 cut(s) 177, 623
BspLI GGNNCC 2 cut(s) 110, 1085
BspMAI CTGCAG 1 cut(s) 1042
BspOI GCTAGC 1 cut(s) 816
BspPI GGATC 6 cut(s) 102, 437, 851, 1078, 1091, 1126
BspQI GCTCTTC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 1317
BsrDI GCAATG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 4 cut(s) 702, 759, 821, 1166
BssMI GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
BssNI GRCGYC 1 cut(s) 744
BssSI CACGAG 2 cut(s) 588, 1203
BssT1I CCWWGG 3 cut(s) 702, 759, 821
Bst2BI CACGAG 2 cut(s) 588, 1203
Bst4CI ACNGT 4 cut(s) 134, 415, 844, 1292
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 744
BstC8I GCNNGC 5 cut(s) 161, 275, 401, 814, 1173
BstDEI CTNAG 5 cut(s) 68, 492, 897, 956, 1128
BstDSI CCRYGG 2 cut(s) 702, 759
BstF5I GGATG 4 cut(s) 445, 792, 816, 1233
BstFNI CGCG 2 cut(s) 177, 623
BstH2I RGCGCY 2 cut(s) 160, 172
BstHHI GCGC 3 cut(s) 159, 171, 1021
BstKTI GATC 7 cut(s) 31, 97, 445, 526, 859, 1086, 1134
BstMAI GTCTC 1 cut(s) 1342
BstMBI GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
BstMWI GCNNNNNNNGC 5 cut(s) 64, 70, 73, 160, 183
BstNSI RCATGY 4 cut(s) 277, 479, 905, 1058
BstSCI CCNGG 1 cut(s) 1166
BstSFI CTRYAG 1 cut(s) 1038
BstUI CGCG 2 cut(s) 177, 623
BstV1I GCAGC 9 cut(s) 48, 70, 85, 166, 1024, 1063, 1104, 1129, 1280
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 2 cut(s) 1083, 1131
BstYI RGATCY 2 cut(s) 1083, 1131
BsuRI GGCC 3 cut(s) 47, 1171, 1364
BtgI CCRYGG 2 cut(s) 702, 759
BtsCI GGATG 4 cut(s) 445, 792, 816, 1233
BtsI GCAGTG 2 cut(s) 313, 1047
BtsIMutI CAGTG 2 cut(s) 313, 1047
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 5 cut(s) 161, 275, 401, 814, 1173
CfoI GCGC 3 cut(s) 159, 171, 1021
Cfr13I GGNCC 4 cut(s) 46, 736, 1243, 1331
CseI GACGC 3 cut(s) 507, 629, 752
Csp6I GTAC 2 cut(s) 380, 922
CviQI GTAC 2 cut(s) 380, 922
DdeI CTNAG 5 cut(s) 68, 492, 897, 956, 1128
DpnI GATC 7 cut(s) 30, 96, 444, 525, 858, 1085, 1133
DpnII GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
DraIII CACNNNGTG 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 3 cut(s) 702, 759, 821
Eco47I GGWCC 3 cut(s) 736, 1243, 1331
Eco47III AGCGCT 2 cut(s) 158, 170
Eco57I CTGAAG 3 cut(s) 270, 534, 909
Eco88I CYCGRG 2 cut(s) 164, 684
EcoO109I RGGNCCY 1 cut(s) 46
EcoRI GAATTC 2 cut(s) 239, 883
EcoT14I CCWWGG 3 cut(s) 702, 759, 821
ErhI CCWWGG 3 cut(s) 702, 759, 821
Esp3I CGTCTC 1 cut(s) 1342
FauI CCCGC 2 cut(s) 776, 1316
FblI GTMKAC 1 cut(s) 978
FokI GGATG 4 cut(s) 452, 799, 803, 1240
FspBI CTAG 3 cut(s) 813, 1139, 1272
FspI TGCGCA 1 cut(s) 1020
GlaI GCGC 3 cut(s) 158, 170, 1020
HaeII RGCGCY 2 cut(s) 160, 172
HaeIII GGCC 3 cut(s) 47, 1171, 1364
HapII CCGG 3 cut(s) 106, 296, 1168
HgaI GACGC 3 cut(s) 507, 629, 752
HhaI GCGC 3 cut(s) 159, 171, 1021
Hin1I GRCGYC 1 cut(s) 744
Hin6I GCGC 3 cut(s) 157, 169, 1019
HinP1I GCGC 3 cut(s) 157, 169, 1019
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HinfI GANTC 5 cut(s) 191, 257, 337, 640, 1296
HpaII CCGG 3 cut(s) 106, 296, 1168
HphI GGTGA 3 cut(s) 605, 850, 1104
Hpy166II GTNNAC 4 cut(s) 507, 658, 979, 1112
Hpy188I TCNGA 6 cut(s) 495, 523, 889, 1076, 1099, 1314
Hpy188III TCNNGA 7 cut(s) 176, 485, 684, 686, 727, 909, 1205
Hpy8I GTNNAC 4 cut(s) 507, 658, 979, 1112
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 7 cut(s) 210, 223, 275, 665, 884, 1104, 1202
HpyCH4III ACNGT 4 cut(s) 134, 415, 844, 1292
HpyCH4V TGCA 9 cut(s) 58, 154, 536, 778, 790, 1040, 1051, 1120, 1220
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 70, 73, 160, 183
HpyF3I CTNAG 5 cut(s) 68, 492, 897, 956, 1128
Hsp92I GRCGYC 1 cut(s) 744
HspAI GCGC 3 cut(s) 157, 169, 1019
Kzo9I GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 2 cut(s) 893, 1150
Lsp1109I GCAGC 9 cut(s) 48, 70, 85, 166, 1024, 1063, 1104, 1129, 1280
LweI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
MaeI CTAG 3 cut(s) 813, 1139, 1272
MaeIII GTNAC 6 cut(s) 134, 544, 838, 994, 1002, 1184
MalI GATC 7 cut(s) 30, 96, 444, 525, 858, 1085, 1133
MbiI CCGCTC 1 cut(s) 1317
MboI GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
MflI RGATCY 2 cut(s) 1083, 1131
MluCI AATT 7 cut(s) 239, 365, 635, 883, 983, 1067, 1384
MlyI GAGTC 1 cut(s) 1305
MmeI TCCRAC 2 cut(s) 150, 1159
MslI CAYNNNNRTG 1 cut(s) 1283
MspA1I CMGCKG 3 cut(s) 61, 76, 1117
MspI CCGG 3 cut(s) 106, 296, 1168
MspR9I CCNGG 1 cut(s) 1168
MvnI CGCG 2 cut(s) 177, 623
MwoI GCNNNNNNNGC 5 cut(s) 64, 70, 73, 160, 183
NciI CCSGG 1 cut(s) 1168
NcoI CCATGG 2 cut(s) 702, 759
NdeII GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
NheI GCTAGC 1 cut(s) 812
NlaIV GGNNCC 2 cut(s) 110, 1085
NmuCI GTSAC 2 cut(s) 838, 1002
NruI TCGCGA 1 cut(s) 177
NsbI TGCGCA 1 cut(s) 1020
NspI RCATGY 4 cut(s) 277, 479, 905, 1058
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 2 cut(s) 164, 684
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 32
PfeI GAWTC 4 cut(s) 191, 257, 337, 640
PleI GAGTC 1 cut(s) 1304
PpsI GAGTC 1 cut(s) 1304
PscI ACATGT 1 cut(s) 475
PsiI TTATAA 1 cut(s) 410
PspN4I GGNNCC 2 cut(s) 110, 1085
PspPI GGNCC 4 cut(s) 46, 736, 1243, 1331
PspXI VCTCGAGB 1 cut(s) 164
PstI CTGCAG 1 cut(s) 1042
PsuI RGATCY 2 cut(s) 1083, 1131
PvuII CAGCTG 1 cut(s) 61
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 2 cut(s) 381, 923
RsaNI GTAC 2 cut(s) 380, 922
RseI CAYNNNNRTG 1 cut(s) 1283
SalI GTCGAC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 32
Sau3AI GATC 7 cut(s) 28, 94, 442, 523, 856, 1083, 1131
Sau96I GGNCC 4 cut(s) 46, 736, 1243, 1331
SchI GAGTC 1 cut(s) 1305
ScrFI CCNGG 1 cut(s) 1168
SfaNI GCATC 7 cut(s) 364, 478, 777, 825, 916, 1218, 1229
SfcI CTRYAG 1 cut(s) 1038
Sfr274I CTCGAG 2 cut(s) 164, 684
SinI GGWCC 3 cut(s) 736, 1243, 1331
SlaI CTCGAG 2 cut(s) 164, 684
SmiMI CAYNNNNRTG 1 cut(s) 1283
SmlI CTYRAG 4 cut(s) 164, 499, 684, 990
SmoI CTYRAG 4 cut(s) 164, 499, 684, 990
SphI GCATGC 1 cut(s) 277
Sse9I AATT 7 cut(s) 239, 365, 635, 883, 983, 1067, 1384
SspI AATATT 1 cut(s) 754
SspMI CTAG 3 cut(s) 813, 1139, 1272
StyD4I CCNGG 1 cut(s) 1166
StyI CCWWGG 3 cut(s) 702, 759, 821
TaaI ACNGT 4 cut(s) 134, 415, 844, 1292
TaqI TCGA 5 cut(s) 165, 472, 486, 685, 978
TaqII GACCGA 2 cut(s) 990, 1047
TasI AATT 7 cut(s) 239, 365, 635, 883, 983, 1067, 1384
TatI WGTACW 1 cut(s) 379
TauI GCSGC 3 cut(s) 67, 102, 626
TfiI GAWTC 4 cut(s) 191, 257, 337, 640
TscAI CASTG 2 cut(s) 313, 1047
TseFI GTSAC 2 cut(s) 838, 1002
Tsp45I GTSAC 2 cut(s) 838, 1002
TspDTI ATGAA 3 cut(s) 341, 1228, 1301
TspGWI ACGGA 2 cut(s) 1240, 1323
TspRI CASTG 2 cut(s) 313, 1047
VpaK11BI GGWCC 3 cut(s) 736, 1243, 1331
XapI RAATTY 2 cut(s) 239, 883
XceI RCATGY 4 cut(s) 277, 479, 905, 1058
XhoI CTCGAG 2 cut(s) 164, 684
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 3 cut(s) 813, 1139, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.