RLG00000025335

cardiolipin acyl-chain remodeling

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
45110570 .. 45113423
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025335

Sequence Viewer

Length: 1305 bp
ATGGCCGCTGCGAGGGTTGAGCGCGGAGATCTGTGGAAGAGCAACGCCCTCTCCGTACAGCGCCGGCTCAGGGAGCGGTTCAGAGTCGAGGTGGACCGCCGGTTCAGGCACCACCCGGTTTTCGCCGACGGTTACTTCGCCTCCACCGTGCAGCGGTGGCTCCAGCGGTTCCGTGATTTCAAGAGGGACTCGCTTCCGTCCTCCACCGGCTTCTATCGCAAACGAGTGGGTGTAGTGGGCAAGGAAATCAACGCTGAAGAAGAGTCGGCCATTCTTCGCATGGTGCAAGCTGTTGCTGTGCCGGTCATTGGCAATGTTTGCCATGTGTTCATGAATGGATTAAATCGTGTTCAGGTCTATGGTTTAGAAAAATTACATGGCGCATTGCTACGCAGACCCAAAGACAGGCCTCTTATAACGGTTAGCAATCATGTGGCTTCTATGGATGATCCGCTTGTTATTGCTGCACTGCTTCCTCCAAATGTTCTTCTGGATGCTAAGAACTTGAGGTGGACACTGTGTGCATCTGATAGGTGTTTTTCGAATCCTGTAACTTCAGCATTTTTCCGATCTGTCAAAGTCTTGCCAGTTGCTCGTGGTGATGGGATTTATCAAAAGGGTATGGACATTGCTATTTCAAAATTAAATCAAGGTGGCTGGGTTCACATCTTCCCAGAAGGTAGTCGTTCTCGAGATGGTGGTAAAACCCTGGGGTCACCCAAGAGAGGTGTTGGGAGGTTGGTCCTTGATGCTGACACTATTCCCATGGTTATTCCATTTGTACATAGTGGGATGCAGGACATCATGCCTATTGGTGCCAGCTTCCCGAGGATTGGCAAGACGGTGACGGTGATTATTGGTGATCCAATCTACTTTGATGATTTGCTAAATAATGAAGGAGCAAAGCATTTATCAAGAGGAAAATTATATGATGCAGTATCCTCAAGAATCGGTCATCGACTACGTCAACTGAAAGTTCAGGTTGACAAACTGACTCAAGGGACACAATTACTAAATGATGGTTCACTGATGGAAGAAACTCCGGAACAACTAGTTGTTGCCGGTACACAAGAGGCCAGGTCTTGTGATCGGTTCCGAGTGGGTTTCTCGAAAGATGGCTGGATTGCGTCAAGGATGCGTAGTTTTATGGAACCTACCGAGCTGATGGGATTTGCAGCCAGAGGCTTATTTATGAACCGTAGAGCGGTTGAAACCTCTGAAAGTGGTAGTAGAAGGGTAGGCCCGTTGACAGCATGGAACCAATTTCTTGAAGCCAATGTACCACCAAGATGGAACTGTGCCTGA

Protein Analysis

435

Amino Acids

48.58

Weight (kDa)

10.13

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 117 - 260 1e-17 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AccB1I GGYRCC 2 cut(s) 108, 815
AccBSI CCGCTC 2 cut(s) 76, 1205
AccII CGCG 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 1042
AciI CCGC 8 cut(s) 6, 24, 76, 97, 154, 166, 452, 1205
AclWI GGATC 2 cut(s) 443, 857
AcoI YGGCCR 2 cut(s) 3, 267
AcuI CTGAAG 2 cut(s) 276, 540
AdeI CACNNNGTG 1 cut(s) 521
AfaI GTAC 4 cut(s) 57, 783, 1066, 1281
AfiI CCNNNNNNNGG 8 cut(s) 12, 70, 153, 308, 405, 725, 833, 1204
AgsI TTSAA 4 cut(s) 181, 639, 1211, 1271
AhlI ACTAGT 1 cut(s) 1051
AjnI CCWGG 2 cut(s) 708, 1076
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 290, 822, 1162
AluI AGCT 3 cut(s) 290, 822, 1162
AlwI GGATC 2 cut(s) 443, 857
Ama87I CYCGRG 2 cut(s) 690, 826
Aor13HI TCCGGA 1 cut(s) 1042
AoxI GGCC 5 cut(s) 3, 267, 407, 1074, 1240
ApeKI GCWGC 4 cut(s) 8, 151, 464, 1175
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 3 cut(s) 24, 63, 383
AspS9I GGNCC 3 cut(s) 94, 742, 1241
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 5 cut(s) 611, 708, 856, 862, 872
AsuII TTCGAA 1 cut(s) 542
AvaI CYCGRG 2 cut(s) 690, 826
AvaII GGWCC 2 cut(s) 94, 742
BanI GGYRCC 2 cut(s) 108, 815
BarI GAAGNNNNNNTAC 2 cut(s) 1263, 1295
BauI CACGAG 1 cut(s) 594
BbvI GCAGC 3 cut(s) 163, 451, 1187
BccI CCATC 7 cut(s) 596, 689, 1013, 1024, 1109, 1159, 1284
BciT130I CCWGG 2 cut(s) 710, 1078
BciVI GTATCC 1 cut(s) 949
BcnI CCSGG 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 1051
BfaI CTAG 1 cut(s) 1052
BfoI RGCGCY 1 cut(s) 64
BfuI GTATCC 1 cut(s) 949
BglII AGATCT 1 cut(s) 28
BisI GCNGC 5 cut(s) 6, 9, 152, 465, 1176
BlsI GCNGC 5 cut(s) 7, 10, 153, 466, 1177
Bme1390I CCNGG 3 cut(s) 116, 710, 1078
Bme18I GGWCC 2 cut(s) 94, 742
BmeT110I CYCGRG 2 cut(s) 690, 826
BmgT120I GGNCC 3 cut(s) 94, 742, 1241
BmiI GGNNCC 7 cut(s) 110, 161, 170, 817, 1094, 1152, 1259
BmrFI CCNGG 3 cut(s) 116, 710, 1078
BmsI GCATC 6 cut(s) 484, 533, 739, 783, 922, 1125
BpmI CTGGAG 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 3 cut(s) 526, 928, 981
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 708, 709, 765, 827
BsaWI WCCGGW 1 cut(s) 1042
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 125, 155
Bsc4I CCNNNNNNNGG 8 cut(s) 12, 70, 153, 308, 405, 725, 833, 1204
Bse118I RCCGGY 5 cut(s) 63, 99, 206, 301, 1061
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 3 cut(s) 319, 383, 627
BseAI TCCGGA 1 cut(s) 1042
BseBI CCWGG 2 cut(s) 710, 1078
BseDI CCNNGG 4 cut(s) 708, 709, 765, 827
BseGI GGATG 4 cut(s) 451, 499, 798, 1140
BseLI CCNNNNNNNGG 8 cut(s) 12, 70, 153, 308, 405, 725, 833, 1204
BseMI GCAATG 3 cut(s) 319, 383, 627
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 587
BseXI GCAGC 3 cut(s) 163, 451, 1187
BseYI CCCAGC 1 cut(s) 657
BsgI GTGCAG 2 cut(s) 170, 450
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 5 cut(s) 5, 269, 409, 1076, 1242
BshNI GGYRCC 2 cut(s) 108, 815
BsiHKCI CYCGRG 2 cut(s) 690, 826
BsiSI CCGG 7 cut(s) 64, 100, 116, 207, 302, 1043, 1062
BslFI GGGAC 2 cut(s) 200, 1015
BslI CCNNNNNNNGG 8 cut(s) 12, 70, 153, 308, 405, 725, 833, 1204
BsmFI GGGAC 2 cut(s) 200, 1015
BsnI GGCC 5 cut(s) 5, 269, 409, 1076, 1242
BsoBI CYCGRG 2 cut(s) 690, 826
Bsp119I TTCGAA 1 cut(s) 542
Bsp13I TCCGGA 1 cut(s) 1042
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 5 cut(s) 28, 448, 569, 862, 1087
Bsp19I CCATGG 1 cut(s) 765
BspACI CCGC 8 cut(s) 6, 24, 76, 97, 154, 166, 452, 1205
BspANI GGCC 5 cut(s) 5, 269, 409, 1076, 1242
BspCNI CTCAG 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 1042
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 7 cut(s) 110, 161, 170, 817, 1094, 1152, 1259
BspPI GGATC 2 cut(s) 443, 857
BspQI GCTCTTC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 542
BspT107I GGYRCC 2 cut(s) 108, 815
BsrBI CCGCTC 2 cut(s) 76, 1205
BsrDI GCAATG 3 cut(s) 319, 383, 627
BsrFI RCCGGY 5 cut(s) 63, 99, 206, 301, 1061
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 1 cut(s) 587
BssAI RCCGGY 5 cut(s) 63, 99, 206, 301, 1061
BssECI CCNNGG 4 cut(s) 708, 709, 765, 827
BssMI GATC 5 cut(s) 28, 448, 569, 862, 1087
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 765
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 2 cut(s) 710, 1078
Bst4CI ACNGT 8 cut(s) 131, 148, 421, 519, 844, 850, 1199, 1298
Bst6I CTCTTC 2 cut(s) 32, 255
BstAPI GCANNNNNTGC 1 cut(s) 318
BstAUI TGTACA 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 65, 288, 820
BstDEI CTNAG 2 cut(s) 68, 498
BstDSI CCRYGG 1 cut(s) 765
BstEII GGTNACC 1 cut(s) 714
BstF5I GGATG 4 cut(s) 451, 499, 798, 1140
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 3 cut(s) 24, 63, 383
BstKTI GATC 5 cut(s) 31, 451, 572, 865, 1090
BstMBI GATC 5 cut(s) 28, 448, 569, 862, 1087
BstMWI GCNNNNNNNGC 4 cut(s) 73, 157, 216, 318
BstNI CCWGG 2 cut(s) 710, 1078
BstPI GGTNACC 1 cut(s) 714
BstSCI CCNGG 3 cut(s) 114, 708, 1076
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 163, 451, 1187
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 1290
BstYI RGATCY 1 cut(s) 28
BsuI GTATCC 1 cut(s) 949
BsuRI GGCC 5 cut(s) 5, 269, 409, 1076, 1242
BtgI CCRYGG 1 cut(s) 765
BtsCI GGATG 4 cut(s) 451, 499, 798, 1140
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 3 cut(s) 467, 515, 1025
Cac8I GCNNGC 3 cut(s) 65, 288, 820
CciI TCATGA 1 cut(s) 330
CfoI GCGC 3 cut(s) 24, 63, 383
Cfr10I RCCGGY 5 cut(s) 63, 99, 206, 301, 1061
Cfr13I GGNCC 3 cut(s) 94, 742, 1241
CseI GACGC 1 cut(s) 1116
Csp6I GTAC 4 cut(s) 56, 782, 1065, 1280
CviAII CATG 8 cut(s) 280, 323, 331, 377, 431, 766, 805, 1254
CviQI GTAC 4 cut(s) 56, 782, 1065, 1280
DdeI CTNAG 2 cut(s) 68, 498
DpnI GATC 5 cut(s) 30, 450, 571, 864, 1089
DpnII GATC 5 cut(s) 28, 448, 569, 862, 1087
DraIII CACNNNGTG 1 cut(s) 521
EaeI YGGCCR 2 cut(s) 3, 267
Eam1104I CTCTTC 2 cut(s) 32, 255
EarI CTCTTC 2 cut(s) 32, 255
Eco130I CCWWGG 1 cut(s) 765
Eco147I AGGCCT 1 cut(s) 409
Eco47I GGWCC 2 cut(s) 94, 742
Eco57I CTGAAG 2 cut(s) 276, 540
Eco88I CYCGRG 2 cut(s) 690, 826
Eco91I GGTNACC 1 cut(s) 714
EcoO65I GGTNACC 1 cut(s) 714
EcoRII CCWGG 2 cut(s) 708, 1076
EcoT14I CCWWGG 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 8 cut(s) 283, 326, 334, 380, 434, 769, 808, 1257
FaqI GGGAC 2 cut(s) 200, 1015
FatI CATG 8 cut(s) 279, 322, 330, 376, 430, 765, 804, 1253
Fnu4HI GCNGC 5 cut(s) 6, 9, 152, 465, 1176
FokI GGATG 4 cut(s) 458, 506, 805, 1147
Fsp4HI GCNGC 5 cut(s) 6, 9, 152, 465, 1176
FspBI CTAG 1 cut(s) 1052
GlaI GCGC 3 cut(s) 23, 62, 382
GluI GCNGC 5 cut(s) 6, 9, 152, 465, 1176
GsaI CCCAGC 1 cut(s) 661
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 5 cut(s) 5, 269, 409, 1076, 1242
HapII CCGG 7 cut(s) 64, 100, 116, 207, 302, 1043, 1062
HgaI GACGC 1 cut(s) 1116
HhaI GCGC 3 cut(s) 24, 63, 383
Hin1II CATG 8 cut(s) 283, 326, 334, 380, 434, 769, 808, 1257
Hin6I GCGC 3 cut(s) 22, 61, 381
HinP1I GCGC 3 cut(s) 22, 61, 381
HincII GTYRAC 3 cut(s) 968, 985, 1248
HindII GTYRAC 3 cut(s) 968, 985, 1248
HinfI GANTC 6 cut(s) 84, 188, 263, 544, 948, 994
HpaII CCGG 7 cut(s) 64, 100, 116, 207, 302, 1043, 1062
HphI GGTGA 5 cut(s) 611, 708, 856, 862, 872
Hpy166II GTNNAC 8 cut(s) 94, 513, 664, 968, 985, 1025, 1067, 1248
Hpy188I TCNGA 5 cut(s) 83, 529, 569, 1097, 1219
Hpy8I GTNNAC 8 cut(s) 94, 513, 664, 968, 985, 1025, 1067, 1248
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 671, 890, 1227
HpyCH4III ACNGT 8 cut(s) 131, 148, 421, 519, 844, 850, 1199, 1298
HpyCH4IV ACGT 1 cut(s) 964
HpyCH4V TGCA 7 cut(s) 151, 286, 467, 524, 796, 935, 1175
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 157, 216, 318
HpyF3I CTNAG 2 cut(s) 68, 498
HpySE526I ACGT 1 cut(s) 964
Hsp92II CATG 8 cut(s) 283, 326, 334, 380, 434, 769, 808, 1257
HspAI GCGC 3 cut(s) 22, 61, 381
Kpn2I TCCGGA 1 cut(s) 1042
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Kzo9I GATC 5 cut(s) 28, 448, 569, 862, 1087
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 3 cut(s) 73, 165, 899
Lsp1109I GCAGC 3 cut(s) 163, 451, 1187
LweI GCATC 6 cut(s) 484, 533, 739, 783, 922, 1125
MaeI CTAG 1 cut(s) 1052
MaeII ACGT 1 cut(s) 964
MaeIII GTNAC 4 cut(s) 131, 550, 714, 844
MalI GATC 5 cut(s) 30, 450, 571, 864, 1089
MbiI CCGCTC 2 cut(s) 76, 1205
MboI GATC 5 cut(s) 28, 448, 569, 862, 1087
MboII GAAGA 7 cut(s) 49, 266, 269, 272, 479, 661, 1046
MflI RGATCY 1 cut(s) 28
MluCI AATT 5 cut(s) 371, 641, 923, 1007, 1262
MlyI GAGTC 4 cut(s) 93, 182, 272, 988
MroI TCCGGA 1 cut(s) 1042
MroNI GCCGGC 1 cut(s) 63
MseI TTAA 2 cut(s) 341, 644
MslI CAYNNNNRTG 1 cut(s) 1288
MspA1I CMGCKG 3 cut(s) 8, 154, 166
MspI CCGG 7 cut(s) 64, 100, 116, 207, 302, 1043, 1062
MspR9I CCNGG 3 cut(s) 116, 710, 1078
MvaI CCWGG 2 cut(s) 710, 1078
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 73, 157, 216, 318
NaeI GCCGGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 765
NdeII GATC 5 cut(s) 28, 448, 569, 862, 1087
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 8 cut(s) 283, 326, 334, 380, 434, 769, 808, 1257
NlaIV GGNNCC 7 cut(s) 110, 161, 170, 817, 1094, 1152, 1259
NmuCI GTSAC 2 cut(s) 714, 844
NspV TTCGAA 1 cut(s) 542
PaeR7I CTCGAG 1 cut(s) 690
PagI TCATGA 1 cut(s) 330
PasI CCCWGGG 1 cut(s) 709
PceI AGGCCT 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 144
PdiI GCCGGC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 544, 948
PflFI GACNNNGTC 1 cut(s) 963
PkrI GCNGC 5 cut(s) 7, 10, 153, 466, 1177
PleI GAGTC 4 cut(s) 92, 182, 271, 988
PpsI GAGTC 4 cut(s) 92, 182, 271, 988
PsiI TTATAA 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 708, 1076
PspEI GGTNACC 1 cut(s) 714
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 2 cut(s) 708, 1076
PspN4I GGNNCC 7 cut(s) 110, 161, 170, 817, 1094, 1152, 1259
PspPI GGNCC 3 cut(s) 94, 742, 1241
PsuI RGATCY 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 963
RsaI GTAC 4 cut(s) 57, 783, 1066, 1281
RsaNI GTAC 4 cut(s) 56, 782, 1065, 1280
RseI CAYNNNNRTG 1 cut(s) 1288
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 341, 644
SatI GCNGC 5 cut(s) 6, 9, 152, 465, 1176
Sau3AI GATC 5 cut(s) 28, 448, 569, 862, 1087
Sau96I GGNCC 3 cut(s) 94, 742, 1241
SchI GAGTC 4 cut(s) 93, 182, 272, 988
ScrFI CCNGG 3 cut(s) 116, 710, 1078
SfaNI GCATC 6 cut(s) 484, 533, 739, 783, 922, 1125
Sfr274I CTCGAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 2 cut(s) 94, 742
SlaI CTCGAG 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 1288
SmlI CTYRAG 4 cut(s) 505, 690, 943, 996
SmoI CTYRAG 4 cut(s) 505, 690, 943, 996
SpeI ACTAGT 1 cut(s) 1051
Sse9I AATT 5 cut(s) 371, 641, 923, 1007, 1262
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 8 cut(s) 6, 24, 76, 97, 154, 166, 452, 1205
SspMI CTAG 1 cut(s) 1052
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 3 cut(s) 114, 708, 1076
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 8 cut(s) 131, 148, 421, 519, 844, 850, 1199, 1298
TaiI ACGT 1 cut(s) 967
TaqI TCGA 5 cut(s) 87, 542, 691, 958, 1109
TaqII GACCGA 1 cut(s) 941
TasI AATT 5 cut(s) 371, 641, 923, 1007, 1262
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 544, 948
Tru1I TTAA 2 cut(s) 341, 644
Tru9I TTAA 2 cut(s) 341, 644
TscAI CASTG 3 cut(s) 474, 522, 1032
TseFI GTSAC 2 cut(s) 714, 844
TseI GCWGC 4 cut(s) 8, 151, 464, 1175
Tsp45I GTSAC 2 cut(s) 714, 844
TspDTI ATGAA 4 cut(s) 319, 347, 909, 1208
TspGWI ACGGA 3 cut(s) 43, 161, 186
TspRI CASTG 3 cut(s) 474, 522, 1032
Tth111I GACNNNGTC 1 cut(s) 963
VpaK11BI GGWCC 2 cut(s) 94, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 690
XspI CTAG 1 cut(s) 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.