Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008257

Physical Location & Seq

Genomic Coordinates Reverse (-)

38307534 .. 38312313

Gene Structure 4780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1251300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGAGACAGCCAGTACTCATTTTCTCTCACCACTTTCAGTCCTTCAGGGAAGCTAGTGCAGATCGAGCACGCTTTGACGGCAGTCGGGTCGGGCCAAACCTCTCTCGGGATCAAGGCTGCTAATGGAGTTGTTATTGCAACCGAGAAGAAGCTACCTTCAATCTTGGTTGATGAAGCATCCGTTCAAAAAATACAGAGTTTGACACCCAATATTGGACTTGTTTACAGCGGTATGGGTCCTGATTTTCGAGTCTTGGTCCGAAAAAGCAGGAAGCAGGCAGAACAATATCACAGATTATATAAGGAACCTATCCCTGTTACTCAACTTGTGAGGGAAACTGCGGCTGTTATGCAGGAGTTCACACAATCTGGTGGTGTAAGGCCATTTGGAGTATCTCTTCTGGTTGCCGGGTTTGATGACAGTGGTCCCCAACTATACCAGGTTGATCCTTCCGGTTCATATTTCTCATGGAAAGCCTCTGCAATGGGGAAGAATGTCTCAAATGCAAAAACTTTTCTTGAGAAGAGGTATACTGAAGATATGGAGCTTGATGATGCTGTGCACACGGCTATTTTGACTTTGAAGGAAGGATTTGAAGGACAAATCTCAGGAAAAAACATTGAGATTGGGATTATTGGCACAGACAAAAAGTTCAGAGTGCTGACCCCAGCAGAGATTGAAGATTATTTGGCTGAGGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0019773 GO:0032991 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

236

Amino Acids

25.6

Weight (kDa)

5.53

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	1.8e-08	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 213	8.9e-59	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35130 AT2G35130 AT2G35130
fragaria_vesca	FvH4_3g12360
malus_domestica	MD05G1251300.v1.1 MD10G1231700.v1.1 MD10G1231800.v1.1
prunus_persica	Prupe.4G112600_v2.0.a1
pyrus_communis	pycom05g20750 pycom05g22900 pycom10g19500 pycom10g19510
rosa_chinensis	RchiOBHm_Chr5g0020151
rosa_laevigata	RLG00000032505
rosa_roxburghii	Rroxscaffold_1G00058050
rosa_rugosa	Rorug05G0057400 Rorug05G0057500
rosa_samantha	Rh5AG147600 Rh5AG147700 Rh5BG147200 Rh5CG158600 Rh5DG146500
rosa_wichuraiana	Rw5G013050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	533
AciI	CCGC	2 cut(s)	231, 344
AclWI	GGATC	2 cut(s)	119, 443
AcuI	CTGAAG	2 cut(s)	30, 558
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	108, 215
AgsI	TTSAA	5 cut(s)	162, 188, 586, 599, 683
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	3 cut(s)	55, 154, 550
AluI	AGCT	3 cut(s)	55, 154, 550
Alw21I	GWGCWC	2 cut(s)	72, 567
Alw26I	GTCTC	1 cut(s)	505
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	2 cut(s)	119, 443
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	94, 383
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	4 cut(s)	94, 239, 259, 428
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	3 cut(s)	239, 259, 428
BaeGI	GKGCMC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	72, 567
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	106
BceAI	ACGGC	2 cut(s)	96, 585
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	120, 345
BlsI	GCNGC	2 cut(s)	121, 346
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	412, 443
Bme18I	GGWCC	3 cut(s)	239, 259, 428
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	4 cut(s)	94, 239, 259, 428
BmiI	GGNNCC	3 cut(s)	240, 309, 430
BmrFI	CCNGG	2 cut(s)	412, 443
BmsI	GCATC	2 cut(s)	188, 547
BoxI	GACNNNNGTC	2 cut(s)	83, 426
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 215
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	108, 215
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	624, 687
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	670
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	96, 385
BsiHKAI	GWGCWC	2 cut(s)	72, 567
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	411, 456
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	108, 215
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	96, 385
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	72, 567
Bsp143I	GATC	3 cut(s)	63, 111, 448
BspACI	CCGC	2 cut(s)	231, 344
BspANI	GGCC	2 cut(s)	96, 385
BspCNI	CTCAG	2 cut(s)	623, 688
BspLI	GGNNCC	3 cut(s)	240, 309, 430
BspPI	GGATC	2 cut(s)	119, 443
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	63, 111, 448
BssNAI	GTATAC	1 cut(s)	534
Bst1107I	GTATAC	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	405, 521
BstC8I	GCNNGC	2 cut(s)	72, 279
BstDEI	CTNAG	2 cut(s)	610, 696
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	66, 114, 451
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	63, 111, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 80
BstNI	CCWGG	1 cut(s)	443
BstPAI	GACNNNNGTC	2 cut(s)	83, 426
BstSCI	CCNGG	2 cut(s)	410, 441
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	106
BstZ17I	GTATAC	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	96, 385
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	72, 279
Cfr13I	GGNCC	4 cut(s)	94, 239, 259, 428
CsiI	ACCWGGT	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	1 cut(s)	471
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	610, 696
DpnI	GATC	3 cut(s)	65, 113, 450
DpnII	GATC	3 cut(s)	63, 111, 448
Eam1104I	CTCTTC	2 cut(s)	405, 521
EarI	CTCTTC	2 cut(s)	405, 521
Eco47I	GGWCC	3 cut(s)	239, 259, 428
Eco57I	CTGAAG	2 cut(s)	30, 558
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	474
FaiI	YATR	9 cut(s)	236, 301, 303, 353, 439, 463, 472, 534, 545
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	1 cut(s)	470
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	120, 345
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	120, 345
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	120, 345
GsaI	CCCAGC	1 cut(s)	674
HaeIII	GGCC	2 cut(s)	96, 385
HapII	CCGG	2 cut(s)	411, 456
Hin1II	CATG	1 cut(s)	474
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	411, 456
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	4 cut(s)	226, 363, 534, 565
Hpy188I	TCNGA	2 cut(s)	263, 659
Hpy188III	TCNNGA	4 cut(s)	109, 242, 521, 612
Hpy8I	GTNNAC	4 cut(s)	226, 363, 534, 565
HpyAV	CCTTC	6 cut(s)	54, 168, 462, 580, 584, 593
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	6 cut(s)	61, 140, 355, 485, 509, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 80
HpyF3I	CTNAG	2 cut(s)	610, 696
Hsp92II	CATG	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	63, 111, 448
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	188, 547
MabI	ACCWGGT	1 cut(s)	441
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	65, 113, 450
MboI	GATC	3 cut(s)	63, 111, 448
MboII	GAAGA	6 cut(s)	160, 392, 505, 538, 551, 695
MhlI	GDGCHC	2 cut(s)	72, 567
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	5 cut(s)	112, 327, 490, 522, 691
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	411, 456
MspR9I	CCNGG	2 cut(s)	412, 443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	67, 80
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	3 cut(s)	63, 111, 448
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	3 cut(s)	240, 309, 430
PkrI	GCNGC	2 cut(s)	121, 346
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	2 cut(s)	83, 426
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	240, 309, 430
PspPI	GGNCC	4 cut(s)	94, 239, 259, 428
PspPPI	RGGWCCY	1 cut(s)	239
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	120, 345
Sau3AI	GATC	3 cut(s)	63, 111, 448
Sau96I	GGNCC	4 cut(s)	94, 239, 259, 428
ScaI	AGTACT	1 cut(s)	17
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	412, 443
SduI	GDGCHC	2 cut(s)	72, 567
SetI	ASST	9 cut(s)	57, 104, 156, 160, 313, 447, 533, 552, 702
SexAI	ACCWGGT	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	188, 547
SinI	GGWCC	3 cut(s)	239, 259, 428
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SsiI	CCGC	2 cut(s)	231, 344
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	410, 441
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	2 cut(s)	66, 250
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	189, 450
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	3 cut(s)	239, 259, 428
XmiI	GTMKAC	1 cut(s)	533
XspI	CTAG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.