Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008257

Physical Location & Seq

Genomic Coordinates Reverse (-)

15915230 .. 15922500

Gene Structure 7271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGGGCGACAGTCAGTACTCGTTTTCGCTCACCACTTTCAGTCCTTCAGGGAAGCTTGTGCAGATCGAGCACGCTTTGACAGCAGTCGGGTCGGGTCAGACTTCTTTGGGGATCAAAGCTTCCAATGGGGTTGTTATTGCCACCGAGAAGAAGCTACCTTCAATCTTGGTTGATGAAGCATCTGTTCAAAAGATACAGTGTTTGACACCAAATATTGGAGTTGTTTACAGTGGTATGGGTCCTGATTTTCGAGTCTTGGTTCGGAAAAGCAGGAAGCAGGCAGTACAGTATCATCAGTTATATAAGGAACCAATCCCTGTTACTCAACTTGTGAGGGAAACTGCTGCTGTGATGCAAGAGTTTACTCAATCTGGTGGTGTAAGGCCTTTTGGAGTATCTCTTCTGGTTGCTGGTTTCGATGACAGTGGTCCCCAACTATTCCAGGTTGATCCTTCAGGTTCATATTTTTCATGGAAAGCCTCTGCAATGGGAAAGAATGTCTCGAATGCAAAAACTTTTCTTGAGAAGAGGTACACTGATGAAATTGAGCTTGAAGATGCTGTGCACACAGCTATTTTGACTCTGAAAGAGGGATTTGAAGGACAGATCTCAGGGAAGAACATTGAGATTGGAATAATTGGCGAAGACAAAATATTCAGGGTGCTATCCCCAGCAGAGATTGAAGACTATTTGGCTGAAGTCGAGTTGACTGTTGAGCATGCCATTAGCTACATTTTCATTGGATCAAGAAGCTGCAAGACTAATTGCAGATGGAAAGCCAAGAGTTCCAATGGTGGAGCTGCTGAAAAGAGCAAGCCTAAGCTTGACACCATCTATATTGACAAACGCGGGAACTTCAGAAGCTTCAACCACAAGAAAGTGTCTAGGAAACGATGTGGTTCTCTAAGGAGCCGAGGATGGAAGTATGGATCCGGGTTTGTTGATGGAATTTTCCCAGTGATGAGCCCCACTGCCGAGCAGCTTCTGGACATTGTACAGAACGAAGCAGATAGAATTAAAATTTGGGAAGTTCTTGACACTCTTCCGGCCTCTCATATCATATGGGATGACATCATTAATGTAGCTGTTCAACTTCGTCTCAATAAAATGTGGGATTCCATAATCTTGATATGTGAGTGGATATTGCACAAGAGCTCCTACAAGCCAGATGTAATCTGCTACAATTTACTGCTAGACGCTTATGGGCAGAAATCACTGCATAAAGAGGCAGAATCCACATATTTGGAACTTCTTGAAGCTCGATGCATTCCCACTGAGGACACTTATGCCCTTCTTATAAAGGCCTACTGCAAGTCTGGATTGCTAGATAGGGCTGAGGCCATTTTTGGTGAAATGCGGAAGTATGGTCTTCCTCCACGTGCAATTGTGTTCGATGCTTATATTAATGGGTTGATAAAAGGAGGAAACCCTCAAAAAGCAGAAGAGATCTTTCAGAGGATGAAAAGAGATCAATGCGAACCATCTGCCGACACTTATACTATGTTAATCAATATATATGGGAAGGCAAGAAAATCCTATATGGCCCTGAAACTGTTCCGCGAAATGAGAAGTCAGAAATGTAAACCGAACATATGCACATATACTGCTTTGATAAATGCATTTGCTAGGGAAGGAAATTGTGAGAAAGCAGAAGAAATATTTGAGCTGCTACAAGAGGCAGGGATTGAGCCTGATGTGTACACTTACAATGCCCTTATGGAAGCTTACAGTAGAGCAGGATATCCTTATGGAGCTGCAGAAATTTTCTCTTTAATGCAGCACATGGGATGTGAACCAGATAGAGCATCATATAATATCATGGTAGATGCATATGGTAGAGGTGGTCTGCATGAAGATGCGCAAGCTGCGTTTGAAGAGATGAAGCGATTAGGAATAACTCCAACAATCAAATCCCACATGCTACTTTTATCTGCCTACTCCAAAGCTGGCAATGTAGCTAGATGTGAAGACATTGTGAACCAGATGCAAGAATCCGGGCTGGAGCTAGACACATTTGTGATTAACAGTATGCTAAACCTGTATGGCCGGCTAGGTCAGCTAGAAAAAATGGAGGAAGTTTTGACAACATTGGAAAAAGGACCGTATGCAGCTGATATCAGTACATATAACATCTTGATTAACATATATGGAAGGGCAGGATTTTTCGACAAGATGGAAGACCTCTTTCGATCACTCCCAATAAAAAACTTGAAACCTGATGTTGTGACATGGACTTCTCGTCTTGGAGCATACTCTAGGAAGAAACTATACACAAGATGCTTGGAAATCTTTGAAGAAATGATTGATGCGGGTTGCTATCCAGATGGCGGAACTGCCAAAGTACTTCTCGCTTCCTGCTCAAGCGAAGATCAAACCGAGCAGGTTAGTACTGTTATTAGAACAATGCACAAGGATGTCAGGACTGTCTTACCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

813

Amino Acids

90.92

Weight (kDa)

6.27

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	8.1e-08	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 213	3e-55	Proteasome subunit
PPR_2	PF13041	389 - 438	2.2e-09	PPR repeat family
PPR_1	PF12854	422 - 453	8.4e-08	PPR repeat
PPR	PF01535	428 - 457	5.4e-07	PPR repeat
PPR_3	PF13812	448 - 508	1.5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	461 - 505	2.7e-09	PPR repeat family
PPR_long	PF17177	479 - 580	7e-12	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	498 - 527	8e-06	PPR repeat
PPR_2	PF13041	498 - 543	1.7e-12	PPR repeat family
PPR_3	PF13812	500 - 541	3.2e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	503 - 575	6.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	517 - 576	1.5e-16	Pentatricopeptide repeat domain
PPR_1	PF12854	527 - 555	1.7e-07	PPR repeat
PPR_2	PF13041	529 - 577	1.9e-13	PPR repeat family
PPR	PF01535	533 - 562	3.2e-07	PPR repeat
TPR_24	PF23276	538 - 614	1.7e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	553 - 612	2.8e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	565 - 611	2.6e-11	PPR repeat family
TPR_24	PF23276	577 - 690	3.8e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	585 - 700	4.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	595 - 628	1.1e-06	PPR repeat
PPR	PF01535	603 - 632	5.6e-07	PPR repeat
PPR_2	PF13041	705 - 746	3.9e-07	PPR repeat family
PPR_2	PF13041	739 - 786	6.9e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35130 AT2G35130 AT2G35130
fragaria_vesca	FvH4_3g12360
malus_domestica	MD05G1251300.v1.1 MD10G1231700.v1.1 MD10G1231800.v1.1
prunus_persica	Prupe.4G112600_v2.0.a1
pyrus_communis	pycom05g20750 pycom05g22900 pycom10g19500 pycom10g19510
rosa_chinensis	RchiOBHm_Chr5g0020151
rosa_laevigata	RLG00000032505
rosa_roxburghii	Rroxscaffold_1G00058050
rosa_rugosa	Rorug05G0057400 Rorug05G0057500
rosa_samantha	Rh5AG147600 Rh5AG147700 Rh5BG147200 Rh5CG158600 Rh5DG146500
rosa_wichuraiana	Rw5G013050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1298
Acc16I	TGCGCA	1 cut(s)	1860
Acc36I	ACCTGC	1 cut(s)	2371
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccII	CGCG	2 cut(s)	849, 1560
AciI	CCGC	5 cut(s)	849, 1357, 1558, 2309, 2328
AclWI	GGATC	5 cut(s)	119, 443, 751, 924, 937
AcoI	YGGCCR	1 cut(s)	2044
AcsI	RAATTY	3 cut(s)	948, 1020, 1761
AcuI	CTGAAG	4 cut(s)	30, 438, 717, 841
AcvI	CACGTG	1 cut(s)	1379
AfaI	GTAC	8 cut(s)	17, 285, 533, 996, 1700, 2122, 2343, 2389
AfiI	CCNNNNNNNGG	2 cut(s)	215, 2327
AhdI	GACNNNNNGTC	1 cut(s)	2238
AjnI	CCWGG	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AleI	CACNNNNGTG	1 cut(s)	2015
Alw21I	GWGCWC	3 cut(s)	72, 567, 1157
Alw26I	GTCTC	2 cut(s)	505, 1103
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	5 cut(s)	119, 443, 751, 924, 937
AlwNI	CAGNNNCTG	1 cut(s)	985
AoxI	GGCC	6 cut(s)	383, 1047, 1302, 1338, 1542, 2044
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	9 cut(s)	344, 753, 800, 979, 1666, 1754, 1777, 1865, 2108
ApoI	RAATTY	3 cut(s)	948, 1020, 1761
AseI	ATTAAT	2 cut(s)	1077, 1404
Asp700I	GAANNNNTTC	1 cut(s)	1553
AspLEI	GCGC	1 cut(s)	1861
AspS9I	GGNCC	4 cut(s)	239, 428, 1543, 2099
AsuC2I	CCSGG	2 cut(s)	934, 1996
AsuHPI	GGTGA	2 cut(s)	22, 1361
AvaII	GGWCC	3 cut(s)	239, 428, 2099
BaeGI	GKGCMC	1 cut(s)	567
BamHI	GGATCC	1 cut(s)	929
BanII	GRGCYC	2 cut(s)	968, 1157
BarI	GAAGNNNNNNTAC	2 cut(s)	2252, 2284
BbrPI	CACGTG	1 cut(s)	1379
BbsI	GAAGAC	5 cut(s)	651, 690, 1361, 1974, 2184
Bbv12I	GWGCWC	3 cut(s)	72, 567, 1157
BbvCI	CCTCAGC	1 cut(s)	1335
BbvI	GCAGC	9 cut(s)	331, 740, 787, 991, 1653, 1741, 1789, 1852, 2120
BccI	CCATC	7 cut(s)	765, 839, 912, 938, 1489, 2167, 2318
BcgI	CGANNNNNNTGC	4 cut(s)	72, 106, 1466, 1500
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	2 cut(s)	934, 1996
BcoDI	GTCTC	2 cut(s)	505, 1103
BfaI	CTAG	9 cut(s)	885, 1193, 1325, 1626, 1959, 2006, 2051, 2060, 2256
BfmI	CTRYAG	1 cut(s)	1755
BfuAI	ACCTGC	1 cut(s)	2371
BglII	AGATCT	2 cut(s)	606, 1446
BisI	GCNGC	9 cut(s)	345, 754, 801, 980, 1667, 1755, 1778, 1866, 2109
BlsI	GCNGC	9 cut(s)	346, 755, 802, 981, 1668, 1756, 1779, 1867, 2110
BmcAI	AGTACT	3 cut(s)	17, 2343, 2389
Bme1390I	CCNGG	3 cut(s)	443, 934, 1996
Bme18I	GGWCC	3 cut(s)	239, 428, 2099
BmeRI	GACNNNNNGTC	1 cut(s)	2238
BmgT120I	GGNCC	4 cut(s)	239, 428, 1543, 2099
BmiI	GGNNCC	5 cut(s)	240, 309, 430, 911, 931
BmrFI	CCNGG	3 cut(s)	443, 934, 1996
BmrI	ACTGGG	1 cut(s)	950
BmuI	ACTGGG	1 cut(s)	950
BoxI	GACNNNNGTC	2 cut(s)	83, 426
BpiI	GAAGAC	5 cut(s)	651, 690, 1361, 1974, 2184
BpmI	CTGGAG	1 cut(s)	2021
Bpu10I	CCTNAGC	2 cut(s)	819, 1335
BpuEI	CTTGAG	2 cut(s)	542, 2344
BpuMI	CCSGG	2 cut(s)	934, 1996
BsaAI	YACGTR	1 cut(s)	1379
BsaJI	CCNNGG	1 cut(s)	913
BsaXI	ACNNNNNCTCC	2 cut(s)	1139, 1169
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 2327
Bse118I	RCCGGY	1 cut(s)	2046
Bse1I	ACTGG	1 cut(s)	956
Bse3DI	GCAATG	2 cut(s)	492, 1957
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	913
BseGI	GGATG	5 cut(s)	923, 1072, 1464, 1793, 2419
BseLI	CCNNNNNNNGG	2 cut(s)	215, 2327
BseMI	GCAATG	2 cut(s)	492, 1957
BseMII	CTCAG	3 cut(s)	624, 1266, 1326
BseNI	ACTGG	1 cut(s)	956
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	9 cut(s)	331, 740, 787, 991, 1653, 1741, 1789, 1852, 2120
BseYI	CCCAGC	1 cut(s)	670
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	2 cut(s)	849, 1560
BshFI	GGCC	6 cut(s)	385, 1049, 1304, 1340, 1544, 2046
BsiHKAI	GWGCWC	3 cut(s)	72, 567, 1157
BsiSI	CCGG	4 cut(s)	933, 1046, 1995, 2047
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	215, 2327
BsmAI	GTCTC	2 cut(s)	505, 1103
BsmBI	CGTCTC	1 cut(s)	1103
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	2 cut(s)	511, 1266
BsnI	GGCC	6 cut(s)	385, 1049, 1304, 1340, 1544, 2046
Bsp1286I	GDGCHC	4 cut(s)	72, 567, 968, 1157
Bsp1407I	TGTACA	2 cut(s)	994, 1698
BspACI	CCGC	5 cut(s)	849, 1357, 1558, 2309, 2328
BspANI	GGCC	6 cut(s)	385, 1049, 1304, 1340, 1544, 2046
BspCNI	CTCAG	3 cut(s)	623, 1267, 1327
BspFNI	CGCG	2 cut(s)	849, 1560
BspLI	GGNNCC	5 cut(s)	240, 309, 430, 911, 931
BspMAI	CTGCAG	1 cut(s)	1759
BspMI	ACCTGC	1 cut(s)	2371
BspPI	GGATC	5 cut(s)	119, 443, 751, 924, 937
BsrDI	GCAATG	2 cut(s)	492, 1957
BsrFI	RCCGGY	1 cut(s)	2046
BsrGI	TGTACA	2 cut(s)	994, 1698
BsrI	ACTGG	1 cut(s)	956
BssAI	RCCGGY	1 cut(s)	2046
BssECI	CCNNGG	1 cut(s)	913
Bst2UI	CCWGG	1 cut(s)	443
Bst6I	CTCTTC	5 cut(s)	405, 521, 1047, 1437, 1869
BstAUI	TGTACA	2 cut(s)	994, 1698
BstBAI	YACGTR	1 cut(s)	1379
BstC8I	GCNNGC	7 cut(s)	72, 279, 720, 815, 1863, 1948, 2048
BstDEI	CTNAG	5 cut(s)	610, 819, 905, 1275, 1335
BstF5I	GGATG	5 cut(s)	923, 1072, 1464, 1793, 2419
BstFNI	CGCG	2 cut(s)	849, 1560
BstHHI	GCGC	1 cut(s)	1861
BstMAI	GTCTC	2 cut(s)	505, 1103
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 80, 1865, 2056
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	2 cut(s)	722, 1921
BstPAI	GACNNNNGTC	2 cut(s)	83, 426
BstSCI	CCNGG	3 cut(s)	441, 932, 1994
BstSFI	CTRYAG	1 cut(s)	1755
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	2 cut(s)	849, 1560
BstV1I	GCAGC	9 cut(s)	331, 740, 787, 991, 1653, 1741, 1789, 1852, 2120
BstV2I	GAAGAC	5 cut(s)	651, 690, 1361, 1974, 2184
BstX2I	RGATCY	3 cut(s)	606, 929, 1446
BstXI	CCANNNNNNTGG	1 cut(s)	1243
BstYI	RGATCY	3 cut(s)	606, 929, 1446
BsuRI	GGCC	6 cut(s)	385, 1049, 1304, 1340, 1544, 2046
BtsCI	GGATG	5 cut(s)	923, 1072, 1464, 1793, 2419
BtsI	GCAGTG	2 cut(s)	969, 1214
BtsIMutI	CAGTG	8 cut(s)	203, 235, 430, 534, 963, 969, 1214, 1272
BveI	ACCTGC	1 cut(s)	2371
Cac8I	GCNNGC	7 cut(s)	72, 279, 720, 815, 1863, 1948, 2048
CaiI	CAGNNNCTG	1 cut(s)	985
CfoI	GCGC	1 cut(s)	1861
Cfr10I	RCCGGY	1 cut(s)	2046
Cfr13I	GGNCC	4 cut(s)	239, 428, 1543, 2099
CseI	GACGC	1 cut(s)	1205
Csp6I	GTAC	8 cut(s)	16, 284, 532, 995, 1699, 2121, 2342, 2388
CviAII	CATG	7 cut(s)	471, 719, 1783, 1819, 1850, 1918, 2229
CviQI	GTAC	8 cut(s)	16, 284, 532, 995, 1699, 2121, 2342, 2388
DdeI	CTNAG	5 cut(s)	610, 819, 905, 1275, 1335
DriI	GACNNNNNGTC	1 cut(s)	2238
EaeI	YGGCCR	1 cut(s)	2044
Eam1104I	CTCTTC	5 cut(s)	405, 521, 1047, 1437, 1869
Eam1105I	GACNNNNNGTC	1 cut(s)	2238
EarI	CTCTTC	5 cut(s)	405, 521, 1047, 1437, 1869
EciI	GGCGGA	1 cut(s)	2343
Ecl136II	GAGCTC	1 cut(s)	1155
Eco147I	AGGCCT	2 cut(s)	385, 1304
Eco24I	GRGCYC	2 cut(s)	968, 1157
Eco32I	GATATC	2 cut(s)	1742, 2116
Eco47I	GGWCC	3 cut(s)	239, 428, 2099
Eco53kI	GAGCTC	1 cut(s)	1155
Eco57I	CTGAAG	4 cut(s)	30, 438, 717, 841
Eco72I	CACGTG	1 cut(s)	1379
EcoICRI	GAGCTC	1 cut(s)	1155
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	441
EcoRV	GATATC	2 cut(s)	1742, 2116
EcoT22I	ATGCAT	3 cut(s)	1268, 1621, 1831
EcoT38I	GRGCYC	2 cut(s)	968, 1157
Esp3I	CGTCTC	1 cut(s)	1103
FaeI	CATG	7 cut(s)	474, 722, 1786, 1822, 1853, 1921, 2232
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	7 cut(s)	470, 718, 1782, 1818, 1849, 1917, 2228
FauI	CCCGC	2 cut(s)	842, 2302
FauNDI	CATATG	3 cut(s)	1061, 1592, 1831
Fnu4HI	GCNGC	9 cut(s)	345, 754, 801, 980, 1667, 1755, 1778, 1866, 2109
FokI	GGATG	5 cut(s)	930, 1079, 1471, 1800, 2426
FriOI	GRGCYC	2 cut(s)	968, 1157
Fsp4HI	GCNGC	9 cut(s)	345, 754, 801, 980, 1667, 1755, 1778, 1866, 2109
FspBI	CTAG	9 cut(s)	885, 1193, 1325, 1626, 1959, 2006, 2051, 2060, 2256
FspI	TGCGCA	1 cut(s)	1860
GlaI	GCGC	1 cut(s)	1860
GluI	GCNGC	9 cut(s)	345, 754, 801, 980, 1667, 1755, 1778, 1866, 2109
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	2021
HaeIII	GGCC	6 cut(s)	385, 1049, 1304, 1340, 1544, 2046
HapII	CCGG	4 cut(s)	933, 1046, 1995, 2047
HgaI	GACGC	1 cut(s)	1205
HhaI	GCGC	1 cut(s)	1861
Hin1II	CATG	7 cut(s)	474, 722, 1786, 1822, 1853, 1921, 2232
Hin6I	GCGC	1 cut(s)	1859
HinP1I	GCGC	1 cut(s)	1859
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HindIII	AAGCTT	5 cut(s)	53, 117, 821, 862, 1722
HinfI	GANTC	5 cut(s)	252, 580, 1115, 1232, 1991
HpaII	CCGG	4 cut(s)	933, 1046, 1995, 2047
HphI	GGTGA	2 cut(s)	22, 1361
Hpy188I	TCNGA	7 cut(s)	99, 264, 585, 860, 1455, 1575, 2438
HpyAV	CCTTC	8 cut(s)	54, 168, 462, 593, 1301, 1516, 1625, 2145
HpyCH4IV	ACGT	1 cut(s)	1378
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 80, 1865, 2056
HpyF3I	CTNAG	5 cut(s)	610, 819, 905, 1275, 1335
HpySE526I	ACGT	1 cut(s)	1378
Hsp92II	CATG	7 cut(s)	474, 722, 1786, 1822, 1853, 1921, 2232
HspAI	GCGC	1 cut(s)	1859
KroI	GCCGGC	1 cut(s)	2046
KroNI	GCCGGC	1 cut(s)	2048
LmnI	GCTCC	6 cut(s)	797, 909, 1160, 1751, 2002, 2246
Lsp1109I	GCAGC	9 cut(s)	331, 740, 787, 991, 1653, 1741, 1789, 1852, 2120
MaeI	CTAG	9 cut(s)	885, 1193, 1325, 1626, 1959, 2006, 2051, 2060, 2256
MaeII	ACGT	1 cut(s)	1378
MaeIII	GTNAC	2 cut(s)	319, 2224
MfeI	CAATTG	1 cut(s)	1383
MflI	RGATCY	3 cut(s)	606, 929, 1446
MhlI	GDGCHC	4 cut(s)	72, 567, 968, 1157
MlyI	GAGTC	2 cut(s)	261, 574
MmeI	TCCRAC	1 cut(s)	1925
Mph1103I	ATGCAT	3 cut(s)	1268, 1621, 1831
MroNI	GCCGGC	1 cut(s)	2046
MroXI	GAANNNNTTC	1 cut(s)	1553
MseI	TTAA	7 cut(s)	1017, 1077, 1404, 1505, 1772, 2022, 2139
MslI	CAYNNNNRTG	3 cut(s)	1854, 2015, 2412
MspA1I	CMGCKG	1 cut(s)	2111
MspI	CCGG	4 cut(s)	933, 1046, 1995, 2047
MspR9I	CCNGG	3 cut(s)	443, 934, 1996
MunI	CAATTG	1 cut(s)	1383
Mva1269I	GAATGC	2 cut(s)	511, 1266
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	2 cut(s)	849, 1560
MwoI	GCNNNNNNNGC	4 cut(s)	67, 80, 1865, 2056
NaeI	GCCGGC	1 cut(s)	2048
NciI	CCSGG	2 cut(s)	934, 1996
NdeI	CATATG	3 cut(s)	1061, 1592, 1831
NgoMIV	GCCGGC	1 cut(s)	2046
NlaIII	CATG	7 cut(s)	474, 722, 1786, 1822, 1853, 1921, 2232
NlaIV	GGNNCC	5 cut(s)	240, 309, 430, 911, 931
NmeAIII	GCCGAG	2 cut(s)	938, 1000
NmuCI	GTSAC	1 cut(s)	2224
NsbI	TGCGCA	1 cut(s)	1860
NsiI	ATGCAT	3 cut(s)	1268, 1621, 1831
NspI	RCATGY	2 cut(s)	722, 1921
OliI	CACNNNNGTG	1 cut(s)	2015
PaeI	GCATGC	1 cut(s)	722
PceI	AGGCCT	2 cut(s)	385, 1304
PctI	GAATGC	2 cut(s)	511, 1266
PdiI	GCCGGC	1 cut(s)	2048
PdmI	GAANNNNTTC	1 cut(s)	1553
PfeI	GAWTC	3 cut(s)	1115, 1232, 1991
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	9 cut(s)	346, 755, 802, 981, 1668, 1756, 1779, 1867, 2110
PleI	GAGTC	2 cut(s)	260, 574
PmaCI	CACGTG	1 cut(s)	1379
PmlI	CACGTG	1 cut(s)	1379
PpsI	GAGTC	2 cut(s)	260, 574
Ppu21I	YACGTR	1 cut(s)	1379
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	2 cut(s)	83, 426
PshBI	ATTAAT	2 cut(s)	1077, 1404
PsiI	TTATAA	1 cut(s)	1298
Psp124BI	GAGCTC	1 cut(s)	1157
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	441
PspCI	CACGTG	1 cut(s)	1379
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	5 cut(s)	240, 309, 430, 911, 931
PspPI	GGNCC	4 cut(s)	239, 428, 1543, 2099
PspPPI	RGGWCCY	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	1759
PstNI	CAGNNNCTG	1 cut(s)	985
PsuI	RGATCY	3 cut(s)	606, 929, 1446
PvuII	CAGCTG	1 cut(s)	2111
RsaI	GTAC	8 cut(s)	17, 285, 533, 996, 1700, 2122, 2343, 2389
RsaNI	GTAC	8 cut(s)	16, 284, 532, 995, 1699, 2121, 2342, 2388
RseI	CAYNNNNRTG	3 cut(s)	1854, 2015, 2412
SacI	GAGCTC	1 cut(s)	1157
SaqAI	TTAA	7 cut(s)	1017, 1077, 1404, 1505, 1772, 2022, 2139
SatI	GCNGC	9 cut(s)	345, 754, 801, 980, 1667, 1755, 1778, 1866, 2109
Sau96I	GGNCC	4 cut(s)	239, 428, 1543, 2099
ScaI	AGTACT	3 cut(s)	17, 2343, 2389
SchI	GAGTC	2 cut(s)	261, 574
ScrFI	CCNGG	3 cut(s)	443, 934, 1996
SduI	GDGCHC	4 cut(s)	72, 567, 968, 1157
SfcI	CTRYAG	1 cut(s)	1755
SinI	GGWCC	3 cut(s)	239, 428, 2099
SmiMI	CAYNNNNRTG	3 cut(s)	1854, 2015, 2412
SmlI	CTYRAG	2 cut(s)	521, 2359
SmoI	CTYRAG	2 cut(s)	521, 2359
SphI	GCATGC	1 cut(s)	722
SseBI	AGGCCT	2 cut(s)	385, 1304
SsiI	CCGC	5 cut(s)	849, 1357, 1558, 2309, 2328
SspI	AATATT	3 cut(s)	214, 654, 1659
SspMI	CTAG	9 cut(s)	885, 1193, 1325, 1626, 1959, 2006, 2051, 2060, 2256
SstI	GAGCTC	1 cut(s)	1157
StuI	AGGCCT	2 cut(s)	385, 1304
StyD4I	CCNGG	3 cut(s)	441, 932, 1994
TaiI	ACGT	1 cut(s)	1381
TaqI	TCGA	9 cut(s)	66, 250, 417, 503, 702, 1261, 1392, 2166, 2188
TatI	WGTACW	7 cut(s)	15, 283, 994, 1698, 2120, 2341, 2387
TfiI	GAWTC	3 cut(s)	1115, 1232, 1991
Tru1I	TTAA	7 cut(s)	1017, 1077, 1404, 1505, 1772, 2022, 2139
Tru9I	TTAA	7 cut(s)	1017, 1077, 1404, 1505, 1772, 2022, 2139
TscAI	CASTG	8 cut(s)	203, 235, 430, 541, 963, 976, 1221, 1279
TseFI	GTSAC	1 cut(s)	2224
TseI	GCWGC	9 cut(s)	344, 753, 800, 979, 1666, 1754, 1777, 1865, 2108
Tsp45I	GTSAC	1 cut(s)	2224
TspDTI	ATGAA	8 cut(s)	189, 450, 459, 555, 727, 1475, 1866, 1895
TspRI	CASTG	8 cut(s)	203, 235, 430, 541, 963, 976, 1221, 1279
Van91I	CCANNNNNTGG	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	3 cut(s)	239, 428, 2099
VspI	ATTAAT	2 cut(s)	1077, 1404
XapI	RAATTY	3 cut(s)	948, 1020, 1761
XceI	RCATGY	2 cut(s)	722, 1921
XmnI	GAANNNNTTC	1 cut(s)	1553
XspI	CTAG	9 cut(s)	885, 1193, 1325, 1626, 1959, 2006, 2051, 2060, 2256
ZrmI	AGTACT	3 cut(s)	17, 2343, 2389
Zsp2I	ATGCAT	3 cut(s)	1268, 1621, 1831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.