Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008257

Physical Location & Seq

Genomic Coordinates Reverse (-)

15378745 .. 15382279

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGATTAACTTGCTCTATGCCCTTGGTTTCGTTAGGTTATTATGCCGTTGGATTTTCAAAGTACCCAAGTCACCAACTAAATTGGTTAAAAATCGATGGATTTGGGTTCAATATTGCCATCAATTTCTAATCGTTCTAAAAGCACCAAATAATTCTGAAATGGTAAAATTAGAAGAAAAAATAAAACAAAGGTTGACTGTTGAGCGCGCCATTAGCTACATTTTCATTGGACCAAGAAGCTGCAAGACTGATTGCAGATGGAAAGCCAAGAGTTCCAATGGTGGAGCTGCTGGAAAGAGCAAGCCTAAGCTTGACACCATCTATATTGACAAACGCGGGAAATTCAGAAGCTTCAACCACAAGAAAGTGTCTAGGAAACGATGTGGTTCTCTAAGGAGCCGAGGATGGAAGTATGGATCCGGGTTTGTTGATGGAATTTTCCCAGTGATGAGCCCCACTGCTGAGCAGATTCTGGACATTGTACAGAACGAAGCGGATAGAATTAAAATATGGGAAGTCCTTGACACTCTTCCGGCCTCTCATATCATATGGGATGACATCATTAATGTAGCTGTTCAACTTCGTCTCAATAAAATGTGGGATTCCATAATCTTGATGTGTGAGTGGATATTGCACAAGAGCTCCTACAAGCCAGATGTAATCTGCTATAATTTACTGCTAGACGCTTATGGGCAGAAATCACTGCATAAAGAGGCAGAATCCACATATTTGGAACTTCTTGAAGCTCGATGCATTCCCACCGAGGACACTTATGCCCTTCTTATAAAGGCCTACTGCAAGTCTGGATTGCTAGATAGGGCTGAAGCCATTTTTGGTGAAATGCGCAAGTATGGTCTTCCTCCAAGTGCAATTGTGTTTGATGCTTATATTAATGGGTTGATAAAAGGAGGAAACCCTCAAAAAGCAGAAGAGATCTTTCAGAGGATGAAAAGAGATCAATGCGAACCATCTGCCGACACTTATACTATGTTAATCAATATTTATGGGAAGGCAAGAAAGTCCTATATGGCCCTAAAACTGTTCCGCGAAATGAGAAGTCAGAAATGTAAACCGAACATATGCACATATACTGCTTTGATAAATGCATTTTCTAGGGAAGGAAATTGTGAGAAAGCAGAAGAGATATTTGAGCAGCTACAAGAGGCAGGGCTTGAGCCTGATGTGTATGCTTACAATGCCCTTATGGAAGCTTACAGTCGAGCAGGATATCCTTATGGAGCAGCAGAAATTTTCTCTTTGATGCAGCACATGGGATGTGAGCCAGATAGAGCTTCATATAATATCATGGTAGATGCATATGGTAGAGGGGGTCTGCATGAAGACGCGCAAGCTGCGTTTGAAGAGATGAAGCGATTAGGAATAACCCCAACAATCAAATCCCATATGCTACTTTTATCTGCCTACTCCAAAGCCGGGAATGTAGCTAGATGTGAAGACATTGTGAACCAGATGCGAGAATCCGGGCTGGAGCTAGACACATTTGTGATTAACAGTATGCTAAACCTGTATGGCCGGCTAGGTCAGCTAGAAAAAATGGAGGGAGTTTTGACTGCACTGGAAAAAGGACCATATGCAGCTGATATCAGTACATATAACATCTTGATTAACATTTATGGAAGGGCAGGATTTTTCGACAAGATGGAAGAGCTCTTCCAATCACTTCCAGCAAAGAAATTAAAACCTGATGTTGTGACATGGACTTCTCGTCTTGGAGCATACTCTAGGAAGAAACTATACACAAGATGCTTGGAAATTTTTGAAGAAATGATTGATGCGGGTTGCTATCCAGATGGCGGAACTGCTAAAGTACTTCTTGCTTCCTGCTCAAGCGAAGATCAAACCAAGCAGGTCAGTGTTGTTATTAGAACAATGCACAAGGATGTCAGGACTGTCTTACCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

641

Amino Acids

72.96

Weight (kDa)

8.89

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	218 - 267	1.7e-09	PPR repeat family
PPR_1	PF12854	251 - 282	6.4e-08	PPR repeat
PPR_2	PF13041	257 - 302	1.5e-07	PPR repeat family
PPR	PF01535	257 - 286	4e-07	PPR repeat
PPR_3	PF13812	277 - 337	2.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	288 - 334	7.6e-10	PPR repeat family
PPR_long	PF17177	308 - 409	9.7e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	327 - 371	2.2e-12	PPR repeat family
PPR	PF01535	327 - 356	6e-06	PPR repeat
PPR_3	PF13812	327 - 370	5e-10	Pentatricopeptide repeat domain
PPR_3	PF13812	346 - 405	8.2e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	356 - 385	9.5e-08	PPR repeat
PPR_2	PF13041	358 - 401	5.4e-11	PPR repeat family
PPR	PF01535	362 - 391	1.8e-07	PPR repeat
PPR_3	PF13812	382 - 441	7.4e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	393 - 440	8.8e-12	PPR repeat family
TPR_24	PF23276	407 - 519	8e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	414 - 528	1.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	424 - 457	8.6e-07	PPR repeat
PPR	PF01535	432 - 461	4.2e-07	PPR repeat
PPR_2	PF13041	432 - 474	2e-06	PPR repeat family
PPR_2	PF13041	534 - 575	4.1e-07	PPR repeat family
PPR_2	PF13041	568 - 615	5.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35130 AT2G35130 AT2G35130
fragaria_vesca	FvH4_3g12360
malus_domestica	MD05G1251300.v1.1 MD10G1231700.v1.1 MD10G1231800.v1.1
prunus_persica	Prupe.4G112600_v2.0.a1
pyrus_communis	pycom05g20750 pycom05g22900 pycom10g19500 pycom10g19510
rosa_chinensis	RchiOBHm_Chr5g0020151
rosa_laevigata	RLG00000032505
rosa_roxburghii	Rroxscaffold_1G00058050
rosa_rugosa	Rorug05G0057400 Rorug05G0057500
rosa_samantha	Rh5AG147600 Rh5AG147700 Rh5BG147200 Rh5CG158600 Rh5DG146500
rosa_wichuraiana	Rw5G013050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	785
Acc16I	TGCGCA	1 cut(s)	845
Acc36I	ACCTGC	1 cut(s)	1858
AccII	CGCG	4 cut(s)	207, 336, 1047, 1346
AciI	CCGC	5 cut(s)	336, 494, 1045, 1796, 1815
AclWI	GGATC	2 cut(s)	411, 424
AcoI	YGGCCR	1 cut(s)	1531
AcsI	RAATTY	4 cut(s)	341, 435, 1248, 1773
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	4 cut(s)	63, 483, 1609, 1830
AfiI	CCNNNNNNNGG	2 cut(s)	1434, 1814
AgsI	TTSAA	7 cut(s)	58, 110, 355, 578, 743, 1361, 1781
AhdI	GACNNNNNGTC	1 cut(s)	1725
AjuI	GAANNNNNNNTTGG	2 cut(s)	816, 848
AleI	CACNNNNGTG	1 cut(s)	1502
Alw21I	GWGCWC	2 cut(s)	644, 1671
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	2 cut(s)	411, 424
AlwNI	CAGNNNCTG	1 cut(s)	472
AoxI	GGCC	4 cut(s)	534, 789, 1029, 1531
ApeKI	GCWGC	7 cut(s)	240, 287, 1153, 1241, 1264, 1352, 1595
ApoI	RAATTY	4 cut(s)	341, 435, 1248, 1773
AseI	ATTAAT	2 cut(s)	564, 891
AspLEI	GCGC	4 cut(s)	207, 209, 846, 1348
AspS9I	GGNCC	3 cut(s)	230, 1030, 1586
AsuC2I	CCSGG	3 cut(s)	421, 1435, 1483
AsuHPI	GGTGA	2 cut(s)	63, 848
AvaII	GGWCC	2 cut(s)	230, 1586
BamHI	GGATCC	1 cut(s)	416
BanII	GRGCYC	3 cut(s)	455, 644, 1671
BarI	GAAGNNNNNNTAC	2 cut(s)	1739, 1771
BbsI	GAAGAC	3 cut(s)	848, 1347, 1461
Bbv12I	GWGCWC	2 cut(s)	644, 1671
BbvI	GCAGC	7 cut(s)	227, 274, 1165, 1253, 1276, 1339, 1607
BccI	CCATC	9 cut(s)	90, 126, 252, 326, 399, 425, 976, 1654, 1805
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BcnI	CCSGG	3 cut(s)	421, 1435, 1483
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	9 cut(s)	372, 680, 812, 1113, 1446, 1493, 1538, 1547, 1743
BfuAI	ACCTGC	1 cut(s)	1858
BglII	AGATCT	1 cut(s)	933
BisI	GCNGC	7 cut(s)	241, 288, 1154, 1242, 1265, 1353, 1596
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	7 cut(s)	242, 289, 1155, 1243, 1266, 1354, 1597
BmcAI	AGTACT	1 cut(s)	1830
Bme1390I	CCNGG	3 cut(s)	421, 1435, 1483
Bme18I	GGWCC	2 cut(s)	230, 1586
BmeRI	GACNNNNNGTC	1 cut(s)	1725
BmgT120I	GGNCC	3 cut(s)	230, 1030, 1586
BmiI	GGNNCC	2 cut(s)	398, 418
BmrFI	CCNGG	3 cut(s)	421, 1435, 1483
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	7 cut(s)	740, 871, 1251, 1303, 1461, 1754, 1783
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	3 cut(s)	848, 1347, 1461
BpmI	CTGGAG	1 cut(s)	1508
Bpu10I	CCTNAGC	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	2 cut(s)	1193, 1831
BpuMI	CCSGG	3 cut(s)	421, 1435, 1483
Bsa29I	ATCGAT	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	22, 400, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	1434, 1814
Bse118I	RCCGGY	1 cut(s)	1533
Bse1I	ACTGG	2 cut(s)	443, 1581
BseCI	ATCGAT	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	22, 400, 762
BseGI	GGATG	5 cut(s)	410, 559, 951, 1280, 1906
BseLI	CCNNNNNNNGG	2 cut(s)	1434, 1814
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	443, 1581
BsePI	GCGCGC	1 cut(s)	205
BseXI	GCAGC	7 cut(s)	227, 274, 1165, 1253, 1276, 1339, 1607
BsgI	GTGCAG	1 cut(s)	1557
Bsh1236I	CGCG	4 cut(s)	207, 336, 1047, 1346
BshFI	GGCC	4 cut(s)	536, 791, 1031, 1533
BshVI	ATCGAT	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	644, 1671
BsiSI	CCGG	5 cut(s)	420, 533, 1434, 1482, 1534
BslI	CCNNNNNNNGG	2 cut(s)	1434, 1814
BsmAI	GTCTC	1 cut(s)	590
BsmBI	CGTCTC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	753
BsnI	GGCC	4 cut(s)	536, 791, 1031, 1533
Bsp1286I	GDGCHC	3 cut(s)	455, 644, 1671
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	4 cut(s)	416, 933, 955, 1855
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	5 cut(s)	336, 494, 1045, 1796, 1815
BspANI	GGCC	4 cut(s)	536, 791, 1031, 1533
BspCNI	CTCAG	1 cut(s)	454
BspDI	ATCGAT	1 cut(s)	94
BspFNI	CGCG	4 cut(s)	207, 336, 1047, 1346
BspLI	GGNNCC	2 cut(s)	398, 418
BspMI	ACCTGC	1 cut(s)	1858
BspPI	GGATC	2 cut(s)	411, 424
BspQI	GCTCTTC	2 cut(s)	1659, 1676
BsrFI	RCCGGY	1 cut(s)	1533
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	443, 1581
BssAI	RCCGGY	1 cut(s)	1533
BssECI	CCNNGG	3 cut(s)	22, 400, 762
BssHII	GCGCGC	1 cut(s)	205
BssMI	GATC	4 cut(s)	416, 933, 955, 1855
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	5 cut(s)	199, 1041, 1217, 1514, 1912
Bst6I	CTCTTC	6 cut(s)	534, 924, 1134, 1356, 1659, 1676
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	4 cut(s)	207, 302, 1350, 1535
BstDEI	CTNAG	3 cut(s)	306, 392, 462
BstF5I	GGATG	5 cut(s)	410, 559, 951, 1280, 1906
BstFNI	CGCG	4 cut(s)	207, 336, 1047, 1346
BstHHI	GCGC	4 cut(s)	207, 209, 846, 1348
BstKTI	GATC	4 cut(s)	419, 936, 958, 1858
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	4 cut(s)	416, 933, 955, 1855
BstMWI	GCNNNNNNNGC	4 cut(s)	213, 1196, 1352, 1543
BstSCI	CCNGG	3 cut(s)	419, 1433, 1481
BstUI	CGCG	4 cut(s)	207, 336, 1047, 1346
BstV1I	GCAGC	7 cut(s)	227, 274, 1165, 1253, 1276, 1339, 1607
BstV2I	GAAGAC	3 cut(s)	848, 1347, 1461
BstX2I	RGATCY	2 cut(s)	416, 933
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	2 cut(s)	416, 933
Bsu15I	ATCGAT	1 cut(s)	94
BsuRI	GGCC	4 cut(s)	536, 791, 1031, 1533
BsuTUI	ATCGAT	1 cut(s)	94
BtsCI	GGATG	5 cut(s)	410, 559, 951, 1280, 1906
BtsI	GCAGTG	2 cut(s)	456, 701
BtsIMutI	CAGTG	5 cut(s)	450, 456, 701, 1574, 1879
BveI	ACCTGC	1 cut(s)	1858
Cac8I	GCNNGC	4 cut(s)	207, 302, 1350, 1535
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	4 cut(s)	207, 209, 846, 1348
Cfr10I	RCCGGY	1 cut(s)	1533
Cfr13I	GGNCC	3 cut(s)	230, 1030, 1586
ClaI	ATCGAT	1 cut(s)	94
CseI	GACGC	2 cut(s)	692, 1352
Csp6I	GTAC	4 cut(s)	62, 482, 1608, 1829
CviAII	CATG	4 cut(s)	1270, 1306, 1337, 1716
CviQI	GTAC	4 cut(s)	62, 482, 1608, 1829
DdeI	CTNAG	3 cut(s)	306, 392, 462
DpnI	GATC	4 cut(s)	418, 935, 957, 1857
DpnII	GATC	4 cut(s)	416, 933, 955, 1855
DriI	GACNNNNNGTC	1 cut(s)	1725
EaeI	YGGCCR	1 cut(s)	1531
Eam1104I	CTCTTC	6 cut(s)	534, 924, 1134, 1356, 1659, 1676
Eam1105I	GACNNNNNGTC	1 cut(s)	1725
EarI	CTCTTC	6 cut(s)	534, 924, 1134, 1356, 1659, 1676
EciI	GGCGGA	1 cut(s)	1830
Ecl136II	GAGCTC	2 cut(s)	642, 1669
Eco130I	CCWWGG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	791
Eco24I	GRGCYC	3 cut(s)	455, 644, 1671
Eco32I	GATATC	2 cut(s)	1229, 1603
Eco47I	GGWCC	2 cut(s)	230, 1586
Eco53kI	GAGCTC	2 cut(s)	642, 1669
Eco57I	CTGAAG	1 cut(s)	843
EcoICRI	GAGCTC	2 cut(s)	642, 1669
EcoRV	GATATC	2 cut(s)	1229, 1603
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	3 cut(s)	755, 1108, 1318
EcoT38I	GRGCYC	3 cut(s)	455, 644, 1671
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	4 cut(s)	1273, 1309, 1340, 1719
FalI	AAGNNNNNCTT	2 cut(s)	1818, 1850
FatI	CATG	4 cut(s)	1269, 1305, 1336, 1715
FauI	CCCGC	2 cut(s)	329, 1789
FauNDI	CATATG	5 cut(s)	548, 1079, 1318, 1404, 1591
Fnu4HI	GCNGC	7 cut(s)	241, 288, 1154, 1242, 1265, 1353, 1596
FokI	GGATG	5 cut(s)	417, 566, 958, 1287, 1913
FriOI	GRGCYC	3 cut(s)	455, 644, 1671
Fsp4HI	GCNGC	7 cut(s)	241, 288, 1154, 1242, 1265, 1353, 1596
FspBI	CTAG	9 cut(s)	372, 680, 812, 1113, 1446, 1493, 1538, 1547, 1743
FspI	TGCGCA	1 cut(s)	845
GlaI	GCGC	4 cut(s)	206, 208, 845, 1347
GluI	GCNGC	7 cut(s)	241, 288, 1154, 1242, 1265, 1353, 1596
GsuI	CTGGAG	1 cut(s)	1508
HaeIII	GGCC	4 cut(s)	536, 791, 1031, 1533
HapII	CCGG	5 cut(s)	420, 533, 1434, 1482, 1534
HgaI	GACGC	2 cut(s)	692, 1352
HhaI	GCGC	4 cut(s)	207, 209, 846, 1348
Hin1II	CATG	4 cut(s)	1273, 1309, 1340, 1719
Hin6I	GCGC	4 cut(s)	205, 207, 844, 1346
HinP1I	GCGC	4 cut(s)	205, 207, 844, 1346
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	3 cut(s)	308, 349, 1209
HinfI	GANTC	4 cut(s)	469, 602, 719, 1478
HpaII	CCGG	5 cut(s)	420, 533, 1434, 1482, 1534
HphI	GGTGA	2 cut(s)	63, 848
Hpy166II	GTNNAC	3 cut(s)	195, 1070, 1465
Hpy188I	TCNGA	5 cut(s)	157, 347, 942, 1062, 1925
Hpy188III	TCNNGA	7 cut(s)	473, 613, 740, 804, 1621, 1808, 1906
Hpy8I	GTNNAC	3 cut(s)	195, 1070, 1465
HpyAV	CCTTC	4 cut(s)	788, 1003, 1112, 1632
HpyCH4III	ACNGT	5 cut(s)	199, 1041, 1217, 1514, 1912
HpyF10VI	GCNNNNNNNGC	4 cut(s)	213, 1196, 1352, 1543
HpyF3I	CTNAG	3 cut(s)	306, 392, 462
Hsp92II	CATG	4 cut(s)	1273, 1309, 1340, 1719
HspAI	GCGC	4 cut(s)	205, 207, 844, 1346
KroI	GCCGGC	1 cut(s)	1533
KroNI	GCCGGC	1 cut(s)	1535
Kzo9I	GATC	4 cut(s)	416, 933, 955, 1855
LguI	GCTCTTC	2 cut(s)	1659, 1676
LmnI	GCTCC	6 cut(s)	284, 396, 647, 1238, 1489, 1733
Lsp1109I	GCAGC	7 cut(s)	227, 274, 1165, 1253, 1276, 1339, 1607
LweI	GCATC	7 cut(s)	740, 871, 1251, 1303, 1461, 1754, 1783
MaeI	CTAG	9 cut(s)	372, 680, 812, 1113, 1446, 1493, 1538, 1547, 1743
MaeIII	GTNAC	2 cut(s)	69, 1711
MalI	GATC	4 cut(s)	418, 935, 957, 1857
MboI	GATC	4 cut(s)	416, 933, 955, 1855
MfeI	CAATTG	1 cut(s)	870
MflI	RGATCY	2 cut(s)	416, 933
MhlI	GDGCHC	3 cut(s)	455, 644, 1671
MmeI	TCCRAC	1 cut(s)	29
Mph1103I	ATGCAT	3 cut(s)	755, 1108, 1318
MroNI	GCCGGC	1 cut(s)	1533
MseI	TTAA	9 cut(s)	6, 87, 504, 564, 891, 992, 1509, 1626, 1697
MslI	CAYNNNNRTG	2 cut(s)	1502, 1899
MspA1I	CMGCKG	1 cut(s)	1598
MspI	CCGG	5 cut(s)	420, 533, 1434, 1482, 1534
MspR9I	CCNGG	3 cut(s)	421, 1435, 1483
MunI	CAATTG	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	753
MvnI	CGCG	4 cut(s)	207, 336, 1047, 1346
MwoI	GCNNNNNNNGC	4 cut(s)	213, 1196, 1352, 1543
NaeI	GCCGGC	1 cut(s)	1535
NciI	CCSGG	3 cut(s)	421, 1435, 1483
NdeI	CATATG	5 cut(s)	548, 1079, 1318, 1404, 1591
NdeII	GATC	4 cut(s)	416, 933, 955, 1855
NgoMIV	GCCGGC	1 cut(s)	1533
NlaIII	CATG	4 cut(s)	1273, 1309, 1340, 1719
NlaIV	GGNNCC	2 cut(s)	398, 418
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	69, 1711
NsbI	TGCGCA	1 cut(s)	845
NsiI	ATGCAT	3 cut(s)	755, 1108, 1318
OliI	CACNNNNGTG	1 cut(s)	1502
PauI	GCGCGC	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	791
PciSI	GCTCTTC	2 cut(s)	1659, 1676
PctI	GAATGC	1 cut(s)	753
PdiI	GCCGGC	1 cut(s)	1535
PfeI	GAWTC	4 cut(s)	469, 602, 719, 1478
PkrI	GCNGC	7 cut(s)	242, 289, 1155, 1243, 1266, 1354, 1597
PshBI	ATTAAT	2 cut(s)	564, 891
PsiI	TTATAA	1 cut(s)	785
Psp124BI	GAGCTC	2 cut(s)	644, 1671
PspN4I	GGNNCC	2 cut(s)	398, 418
PspPI	GGNCC	3 cut(s)	230, 1030, 1586
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	2 cut(s)	416, 933
PteI	GCGCGC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	1598
RsaI	GTAC	4 cut(s)	63, 483, 1609, 1830
RsaNI	GTAC	4 cut(s)	62, 482, 1608, 1829
RseI	CAYNNNNRTG	2 cut(s)	1502, 1899
SacI	GAGCTC	2 cut(s)	644, 1671
SapI	GCTCTTC	2 cut(s)	1659, 1676
SaqAI	TTAA	9 cut(s)	6, 87, 504, 564, 891, 992, 1509, 1626, 1697
SatI	GCNGC	7 cut(s)	241, 288, 1154, 1242, 1265, 1353, 1596
Sau3AI	GATC	4 cut(s)	416, 933, 955, 1855
Sau96I	GGNCC	3 cut(s)	230, 1030, 1586
ScaI	AGTACT	1 cut(s)	1830
ScrFI	CCNGG	3 cut(s)	421, 1435, 1483
SduI	GDGCHC	3 cut(s)	455, 644, 1671
SfaNI	GCATC	7 cut(s)	740, 871, 1251, 1303, 1461, 1754, 1783
SinI	GGWCC	2 cut(s)	230, 1586
SmiMI	CAYNNNNRTG	2 cut(s)	1502, 1899
SmlI	CTYRAG	2 cut(s)	1172, 1846
SmoI	CTYRAG	2 cut(s)	1172, 1846
SseBI	AGGCCT	1 cut(s)	791
SsiI	CCGC	5 cut(s)	336, 494, 1045, 1796, 1815
SspI	AATATT	2 cut(s)	113, 1000
SspMI	CTAG	9 cut(s)	372, 680, 812, 1113, 1446, 1493, 1538, 1547, 1743
SstI	GAGCTC	2 cut(s)	644, 1671
StuI	AGGCCT	1 cut(s)	791
StyD4I	CCNGG	3 cut(s)	419, 1433, 1481
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	5 cut(s)	199, 1041, 1217, 1514, 1912
TaqI	TCGA	4 cut(s)	94, 748, 1219, 1653
TatI	WGTACW	3 cut(s)	481, 1607, 1828
TfiI	GAWTC	4 cut(s)	469, 602, 719, 1478
Tru1I	TTAA	9 cut(s)	6, 87, 504, 564, 891, 992, 1509, 1626, 1697
Tru9I	TTAA	9 cut(s)	6, 87, 504, 564, 891, 992, 1509, 1626, 1697
TscAI	CASTG	5 cut(s)	450, 463, 708, 1581, 1879
TseFI	GTSAC	2 cut(s)	69, 1711
TseI	GCWGC	7 cut(s)	240, 287, 1153, 1241, 1264, 1352, 1595
Tsp45I	GTSAC	2 cut(s)	69, 1711
TspDTI	ATGAA	5 cut(s)	214, 962, 1284, 1353, 1382
TspRI	CASTG	5 cut(s)	450, 463, 708, 1581, 1879
VpaK11BI	GGWCC	2 cut(s)	230, 1586
VspI	ATTAAT	2 cut(s)	564, 891
XapI	RAATTY	4 cut(s)	341, 435, 1248, 1773
XspI	CTAG	9 cut(s)	372, 680, 812, 1113, 1446, 1493, 1538, 1547, 1743
ZrmI	AGTACT	1 cut(s)	1830
Zsp2I	ATGCAT	3 cut(s)	755, 1108, 1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.