Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008257

Physical Location & Seq

Genomic Coordinates Reverse (-)

32828490 .. 32833425

Gene Structure 4936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1231800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGAGACAGCCAGTACTCGTTTTCTCTCACCACTTTCAGTCCTTCAGGGAAGCTAGTGCAGATCGAGCATGCTTTGACGGCAGTCGGGTCTGGCCAAACCTCTCTGGGGATCAAAGCTGCTAATGGGGTTGTTATTGCGACCGAGAAGAAGCTACCTTCAATCTTGGTTGATGAAGCATCCGTTCAAAAAATACAGAGTTTGACGCCAAATATTGGACTTGTTTACAGTGGCATGGGTCCTGATTTTCGAGTCTTGGTTCGAAAAAGCAGGAAACAGGCAGAACAGTATCACAGATTATATAAGGAACCTATCCCTGTTACTCAACTTGTGAGGGAAACTGCAGCTGTTATGCAGGAGTTCACTCAATCTGGTGGTGTAAGGCCATTCGGAGTATCTCTTCTGGTTGCTGGGTTTGATGACAGTGGTCCCCAACTATACCAGGTTGATCCTTCCGGTTCATATTTCTCATGGAAAGCGTCTGCAATGGGGAAGAATGTCTCAAATGCAAAAACTTTTCTTGAGAAGAGGTATACTGAAGATATGGAGCTTGATGATGCTGTGCACACGGCTATTTTGACTTTGAAGGAGGGATTTGAAGGACAAATCTCAGGAAAAAACATTGAGATTGGGATAATTGGCACAGACAAAAAGTTCAGAGTGCTAACCCCAGCAGAGATTGAAGATTATTTGGCTGAGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0019773 GO:0032991 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

236

Amino Acids

25.6

Weight (kDa)

5.53

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	1.8e-08	Proteasome subunit A N-terminal signature
Proteasome	PF00227	31 - 213	8.9e-59	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35130 AT2G35130 AT2G35130
fragaria_vesca	FvH4_3g12360
malus_domestica	MD05G1251300.v1.1 MD10G1231700.v1.1 MD10G1231800.v1.1
prunus_persica	Prupe.4G112600_v2.0.a1
pyrus_communis	pycom05g20750 pycom05g22900 pycom10g19500 pycom10g19510
rosa_chinensis	RchiOBHm_Chr5g0020151
rosa_laevigata	RLG00000032505
rosa_roxburghii	Rroxscaffold_1G00058050
rosa_rugosa	Rorug05G0057400 Rorug05G0057500
rosa_samantha	Rh5AG147600 Rh5AG147700 Rh5BG147200 Rh5CG158600 Rh5DG146500
rosa_wichuraiana	Rw5G013050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	533
AclWI	GGATC	2 cut(s)	119, 443
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	2 cut(s)	30, 558
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	108, 215
AgsI	TTSAA	5 cut(s)	162, 188, 586, 599, 683
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	5 cut(s)	55, 119, 154, 347, 550
AluI	AGCT	5 cut(s)	55, 119, 154, 347, 550
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	505
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	2 cut(s)	119, 443
AoxI	GGCC	2 cut(s)	94, 383
ApaLI	GTGCAC	1 cut(s)	563
ApeKI	GCWGC	2 cut(s)	119, 344
AspS9I	GGNCC	2 cut(s)	239, 428
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	239, 428
BaeGI	GKGCMC	1 cut(s)	567
BalI	TGGCCA	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	567
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	2 cut(s)	106, 356
BceAI	ACGGC	2 cut(s)	96, 585
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	120, 345
BlsI	GCNGC	2 cut(s)	121, 346
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	2 cut(s)	239, 428
BmgT120I	GGNCC	2 cut(s)	239, 428
BmiI	GGNNCC	3 cut(s)	240, 309, 430
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	188, 547
BoxI	GACNNNNGTC	2 cut(s)	83, 426
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 215
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	108, 215
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	624, 687
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	106, 356
BseYI	CCCAGC	2 cut(s)	410, 670
BsgI	GTGCAG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	96, 385
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	108, 215
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	96, 385
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	63, 111, 448
BspANI	GGCC	2 cut(s)	96, 385
BspCNI	CTCAG	2 cut(s)	623, 688
BspLI	GGNNCC	3 cut(s)	240, 309, 430
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	119, 443
BspT104I	TTCGAA	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	63, 111, 448
BssNAI	GTATAC	1 cut(s)	534
BssNI	GRCGYC	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	230, 288, 425
Bst6I	CTCTTC	2 cut(s)	405, 521
BstACI	GRCGYC	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	610, 696
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	66, 114, 451
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	63, 111, 448
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 80
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	74
BstPAI	GACNNNNGTC	2 cut(s)	83, 426
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	106, 356
BstZ17I	GTATAC	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	96, 385
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	235, 430
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	239, 428
CseI	GACGC	2 cut(s)	214, 468
CsiI	ACCWGGT	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	3 cut(s)	71, 235, 471
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	610, 696
DpnI	GATC	3 cut(s)	65, 113, 450
DpnII	GATC	3 cut(s)	63, 111, 448
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	405, 521
EarI	CTCTTC	2 cut(s)	405, 521
Eco47I	GGWCC	2 cut(s)	239, 428
Eco57I	CTGAAG	2 cut(s)	30, 558
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	74, 238, 474
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	3 cut(s)	70, 234, 470
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	120, 345
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	120, 345
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	120, 345
GsaI	CCCAGC	2 cut(s)	414, 674
HaeIII	GGCC	2 cut(s)	96, 385
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	2 cut(s)	214, 468
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	74, 238, 474
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	4 cut(s)	226, 363, 534, 565
Hpy188I	TCNGA	2 cut(s)	392, 659
Hpy188III	TCNNGA	3 cut(s)	242, 521, 612
Hpy8I	GTNNAC	4 cut(s)	226, 363, 534, 565
HpyAV	CCTTC	5 cut(s)	54, 168, 462, 580, 593
HpyCH4III	ACNGT	3 cut(s)	230, 288, 425
HpyCH4V	TGCA	6 cut(s)	61, 344, 355, 485, 509, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 80
HpyF3I	CTNAG	2 cut(s)	610, 696
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	74, 238, 474
Kzo9I	GATC	3 cut(s)	63, 111, 448
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	2 cut(s)	106, 356
LweI	GCATC	2 cut(s)	188, 547
MabI	ACCWGGT	1 cut(s)	441
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	65, 113, 450
MboI	GATC	3 cut(s)	63, 111, 448
MboII	GAAGA	6 cut(s)	160, 392, 505, 538, 551, 695
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	1 cut(s)	636
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	5 cut(s)	112, 327, 522, 583, 691
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	67, 80
NdeII	GATC	3 cut(s)	63, 111, 448
NlaIII	CATG	3 cut(s)	74, 238, 474
NlaIV	GGNNCC	3 cut(s)	240, 309, 430
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	262
PaeI	GCATGC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	121, 346
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PpuMI	RGGWCCY	1 cut(s)	239
PshAI	GACNNNNGTC	2 cut(s)	83, 426
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	441
PspFI	CCCAGC	2 cut(s)	410, 670
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	240, 309, 430
PspPI	GGNCC	2 cut(s)	239, 428
PspPPI	RGGWCCY	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	120, 345
Sau3AI	GATC	3 cut(s)	63, 111, 448
Sau96I	GGNCC	2 cut(s)	239, 428
ScaI	AGTACT	1 cut(s)	17
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	567
SexAI	ACCWGGT	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	188, 547
SfcI	CTRYAG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	2 cut(s)	239, 428
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	1 cut(s)	636
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	230, 288, 425
TaqI	TCGA	3 cut(s)	66, 250, 262
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	1 cut(s)	636
TatI	WGTACW	1 cut(s)	15
TscAI	CASTG	2 cut(s)	235, 430
TseI	GCWGC	2 cut(s)	119, 344
TspDTI	ATGAA	2 cut(s)	189, 450
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	2 cut(s)	235, 430
Van91I	CCANNNNNTGG	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	239, 428
XceI	RCATGY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	533
XspI	CTAG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.