Rh5AG147700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008257
Physical Location & Seq
Reverse (-)
15500616 .. 15507970
7355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG147700.1

Sequence Viewer

Length: 2529 bp
ATGGGCGACAGTCAGTACTCGTTTTCGCTCACCACTTTCAGTCCTTCAGGGAAGCTGGTGCAGATCGAGCACGCTTTGACAGCAGTCGGGTCGGGTCAGACCTCTTTGGGGATCAAAGCTTCCAATGGGGTTGTTATTGCCACCGAGAAGAAGCTACCTTCAATCTTGGTTGATGAAGCATCTGTTCAAAAGATACAGTGTTTGACACCAAATATTGGAGTTGTTTACAGTGGTATGGGTCCTGATTTTCGAGTTTTGGTTCGGAAAAGCAGGAAGCAGGCAGTGCAGTATCATCAGTTATATAAGGAACCAATCCCTGTTACTCAACTTGTGAGGGAAACTGCTGCTGTGATGCAAGAGTTTACTCAATCTGGTGGTGTAAGGCCTTTTGGAGTATCTCTTCTGGTTGCTGGTTTTGATGACAGTGGTCCCCAACTATTCCAGGTTGATCCTTCAGGTTCATATTTTTCATGGAAAGCCTCTGCAATGGGAAAGAATGTCTCAAATGCAAAAACTTTTCTTGAGAAGAGGTACACTGATGAAATTGAGCTTGAAGATGCTGTGCACACGGCTATTTTGACTCTGAAGGAGGGATTTGAAGGACAGATCTCAGGGAAGAACATTGAGATTGGAATAATTGGCGAAGACAAAATATTCAGGGTGCTATCCCCAGCAGAGATTGAAGATTATTTGGCTGAAGTCGAACTATCTTCTTTCTTGCACACTCAAAACTCGCAAAATACCAAACGTCCAAACTGTAAGCTCTTCCTCCATTTCCTCCTCCAAGTAATCATGTTGACTGTTGAGCGCGCCATTAGCTACATTTTCATTGGACCAAGAAGCTGCAAGACTGATTGCAGATGGAAAGCCAAGAGTTCCAATGGTGGAGCTGCTGGAAAGAGCAAGCCTAAGCTTGACACCATCTATATTGACAAACGCGGGAAATTCAGAAGCTTCAACCACAAGAAAGTGTCTAGGAAACGATGTGGTTCTCTAAGGAGCCGAGGATGGAAGTATGGATCCGGGTTTGTTGATGGAATTTTCCCAGTGATGAGCCCCACTGCTGAGCAGATTCTGGACATTGTACAGAACGAAGCGGATAGAATTAAAATATGGGAAGTCCTTGACACTCTTCCGGCCTCTCATATCATATGGGATGACATCATTAATGTAGCTGTTCAACTTCGTCTCAATAAAATGTGGGATTCCATAATCTTGATGTGTGAGTGGATATTGCACAAGAGCTCCTACAAGCCAGATGTAATCTGCTATAATTTACTGCTAGACGCTTATGGGCAGAAATCACTGCATAAAGAGGCAGAATCCACATATTTGGAACTTCTTGAAGCTCGATGCATTCCCACCGAGGACACTTATGCCCTTCTTATAAAGGCCTACTGCAAGTCTGGATTGCTAGATAGGGCTGAAGCCATTTTTGGTGAAATGCGCAAGTATGGTCTTCCTCCAAGTGCAATTGTGTTTGATGCTTATATTAATGGGTTGATAAAAGGAGGAAACCCTCAAAAAGCAGAAGAGATCTTTCAGAGGATGAAAAGAGATCAATGCGAACCATCTGCCGACACTTATACTATGTTAATCAATATTTATGGGAAGGCAAGAAAGTCCTATATGGCCCTAAAACTGTTCCGCGAAATGAGAAGTCAGAAATGTAAACCGAACATATGCACATATACTGCTTTGATAAATGCATTTTCTAGGGAAGGAAATTGTGAGAAAGCAGAAGAGATATTTGAGCAGCTACAAGAGGCAGGGCTTGAGCCTGATGTGTATGCTTACAATGCCCTTATGGAAGCTTACAGTCGAGCAGGATATCCTTATGGAGCAGCAGAAATTTTCTCTTTGATGCAGCACATGGGATGTGAGCCAGATAGAGCTTCATATAATATCATGGTAGATGCATATGGTAGAGGGGGTCTGCATGAAGACGCGCAAGCTGCGTTTGAAGAGATGAAGCGATTAGGAATAACCCCAACAATCAAATCCCATATGCTACTTTTATCTGCCTACTCCAAAGCCGGGAATGTAGCTAGATGTGAAGACATTGTGAACCAGATGCGAGAATCCGGGCTGGAGCTAGACACATTTGTGATTAACAGTATGCTAAACCTGTATGGCCGGCTAGGTCAGCTAGAAAAAATGGAGGGAGTTTTGACTGCACTGGAAAAAGGACCATATGCAGCTGATATCAGTACATATAACATCTTGATTAACATTTATGGAAGGGCAGGATTTTTCGACAAGATGGAAGAGCTCTTCCAATCACTTCCAGCAAAGAAATTAAAACCTGATGTTGTGACATGGACTTCTCGTCTTGGAGCATACTCTAGGAAGAAACTATACACAAGATGCTTGGAAATTTTTGAAGAAATGATTGATGCGGGTTGCTATCCAGATGGCGGAACTGCTAAAGTACTTCTTGCTTCCTGCTCAAGCGAAGATCAAACCAAGCAGGTCAGTGTTGTTATTAGAACAATGCACAAGGATGTCAGGACTGTCTTACCTATCTGA

Protein Analysis

842

Amino Acids

94.27

Weight (kDa)

7.94

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome_A_N PF10584 6 - 28 8.4e-08 Proteasome subunit A N-terminal signature
Proteasome PF00227 31 - 213 3.2e-55 Proteasome subunit
PPR_2 PF13041 419 - 468 2.3e-09 PPR repeat family
PPR_1 PF12854 452 - 483 8.8e-08 PPR repeat
PPR_2 PF13041 458 - 503 2e-07 PPR repeat family
PPR PF01535 458 - 487 5.6e-07 PPR repeat
PPR_3 PF13812 478 - 538 3e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 489 - 535 1.1e-09 PPR repeat family
PPR_long PF17177 509 - 610 1.5e-12 Pentacotripeptide-repeat region of PRORP
PPR PF01535 528 - 557 8.3e-06 PPR repeat
PPR_2 PF13041 528 - 572 3.2e-12 PPR repeat family
PPR_3 PF13812 539 - 571 1.4e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 547 - 606 2.1e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 557 - 586 1.3e-07 PPR repeat
PPR_2 PF13041 559 - 600 2.1e-10 PPR repeat family
PPR PF01535 563 - 592 2.4e-07 PPR repeat
TPR_24 PF23276 568 - 639 6.9e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 583 - 642 1e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 594 - 641 1.2e-11 PPR repeat family
TPR_24 PF23276 607 - 720 1.1e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 615 - 729 2.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 625 - 658 1.2e-06 PPR repeat
PPR_2 PF13041 633 - 669 9.4e-06 PPR repeat family
PPR PF01535 633 - 662 5.9e-07 PPR repeat
PPR_2 PF13041 735 - 776 5.8e-07 PPR repeat family
PPR_2 PF13041 769 - 816 7.3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1388
Acc16I TGCGCA 1 cut(s) 1448
Acc36I ACCTGC 1 cut(s) 2461
AccB7I CCANNNNNTGG 1 cut(s) 215
AccII CGCG 4 cut(s) 810, 939, 1650, 1949
AciI CCGC 5 cut(s) 939, 1097, 1648, 2399, 2418
AclWI GGATC 4 cut(s) 119, 443, 1014, 1027
AcoI YGGCCR 1 cut(s) 2134
AcsI RAATTY 4 cut(s) 944, 1038, 1851, 2376
AcuI CTGAAG 5 cut(s) 30, 438, 605, 717, 1446
AfaI GTAC 5 cut(s) 17, 533, 1086, 2212, 2433
AfiI CCNNNNNNNGG 4 cut(s) 108, 215, 2037, 2417
AhdI GACNNNNNGTC 1 cut(s) 2328
AjnI CCWGG 1 cut(s) 441
AjuI GAANNNNNNNTTGG 2 cut(s) 1419, 1451
AleI CACNNNNGTG 1 cut(s) 2105
Alw21I GWGCWC 4 cut(s) 72, 567, 1247, 2274
Alw26I GTCTC 2 cut(s) 505, 1193
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 4 cut(s) 119, 443, 1014, 1027
AlwNI CAGNNNCTG 1 cut(s) 1075
AoxI GGCC 5 cut(s) 383, 1137, 1392, 1632, 2134
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 8 cut(s) 344, 843, 890, 1756, 1844, 1867, 1955, 2198
ApoI RAATTY 4 cut(s) 944, 1038, 1851, 2376
AseI ATTAAT 2 cut(s) 1167, 1494
AspLEI GCGC 4 cut(s) 810, 812, 1449, 1951
AspS9I GGNCC 5 cut(s) 239, 428, 833, 1633, 2189
AsuC2I CCSGG 3 cut(s) 1024, 2038, 2086
AsuHPI GGTGA 2 cut(s) 22, 1451
AvaII GGWCC 4 cut(s) 239, 428, 833, 2189
BaeGI GKGCMC 1 cut(s) 567
BamHI GGATCC 1 cut(s) 1019
BanII GRGCYC 3 cut(s) 1058, 1247, 2274
BarI GAAGNNNNNNTAC 2 cut(s) 2342, 2374
BbsI GAAGAC 4 cut(s) 651, 1451, 1950, 2064
Bbv12I GWGCWC 4 cut(s) 72, 567, 1247, 2274
BbvI GCAGC 8 cut(s) 331, 830, 877, 1768, 1856, 1879, 1942, 2210
BccI CCATC 7 cut(s) 855, 929, 1002, 1028, 1579, 2257, 2408
BceAI ACGGC 1 cut(s) 585
BcgI CGANNNNNNTGC 4 cut(s) 72, 106, 1556, 1590
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 3 cut(s) 1024, 2038, 2086
BcoDI GTCTC 2 cut(s) 505, 1193
BfaI CTAG 9 cut(s) 975, 1283, 1415, 1716, 2049, 2096, 2141, 2150, 2346
BfuAI ACCTGC 1 cut(s) 2461
BglII AGATCT 2 cut(s) 606, 1536
BisI GCNGC 8 cut(s) 345, 844, 891, 1757, 1845, 1868, 1956, 2199
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 8 cut(s) 346, 845, 892, 1758, 1846, 1869, 1957, 2200
BmcAI AGTACT 2 cut(s) 17, 2433
Bme1390I CCNGG 4 cut(s) 443, 1024, 2038, 2086
Bme18I GGWCC 4 cut(s) 239, 428, 833, 2189
BmeRI GACNNNNNGTC 1 cut(s) 2328
BmgT120I GGNCC 5 cut(s) 239, 428, 833, 1633, 2189
BmiI GGNNCC 5 cut(s) 240, 309, 430, 1001, 1021
BmrFI CCNGG 4 cut(s) 443, 1024, 2038, 2086
BmrI ACTGGG 1 cut(s) 1040
BmuI ACTGGG 1 cut(s) 1040
BoxI GACNNNNGTC 2 cut(s) 83, 426
BpiI GAAGAC 4 cut(s) 651, 1451, 1950, 2064
BpmI CTGGAG 1 cut(s) 2111
Bpu10I CCTNAGC 1 cut(s) 909
Bpu1102I GCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 3 cut(s) 542, 1796, 2434
BpuMI CCSGG 3 cut(s) 1024, 2038, 2086
BsaJI CCNNGG 2 cut(s) 1003, 1365
BsaXI ACNNNNNCTCC 2 cut(s) 1229, 1259
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 215, 2037, 2417
Bse118I RCCGGY 1 cut(s) 2136
Bse1I ACTGG 2 cut(s) 1046, 2184
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 1003, 1365
BseGI GGATG 5 cut(s) 1013, 1162, 1554, 1883, 2509
BseLI CCNNNNNNNGG 4 cut(s) 108, 215, 2037, 2417
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 2 cut(s) 624, 1056
BseNI ACTGG 2 cut(s) 1046, 2184
BsePI GCGCGC 1 cut(s) 808
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 8 cut(s) 331, 830, 877, 1768, 1856, 1879, 1942, 2210
BseYI CCCAGC 1 cut(s) 670
BsgI GTGCAG 3 cut(s) 80, 305, 2160
Bsh1236I CGCG 4 cut(s) 810, 939, 1650, 1949
BshFI GGCC 5 cut(s) 385, 1139, 1394, 1634, 2136
BsiHKAI GWGCWC 4 cut(s) 72, 567, 1247, 2274
BsiSI CCGG 5 cut(s) 1023, 1136, 2037, 2085, 2137
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 4 cut(s) 108, 215, 2037, 2417
BsmAI GTCTC 2 cut(s) 505, 1193
BsmBI CGTCTC 1 cut(s) 1193
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 1356
BsnI GGCC 5 cut(s) 385, 1139, 1394, 1634, 2136
Bsp1286I GDGCHC 5 cut(s) 72, 567, 1058, 1247, 2274
Bsp1407I TGTACA 1 cut(s) 1084
Bsp143I GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
Bsp1720I GCTNAGC 1 cut(s) 1065
BspACI CCGC 5 cut(s) 939, 1097, 1648, 2399, 2418
BspANI GGCC 5 cut(s) 385, 1139, 1394, 1634, 2136
BspCNI CTCAG 2 cut(s) 623, 1057
BspFNI CGCG 4 cut(s) 810, 939, 1650, 1949
BspLI GGNNCC 5 cut(s) 240, 309, 430, 1001, 1021
BspMI ACCTGC 1 cut(s) 2461
BspPI GGATC 4 cut(s) 119, 443, 1014, 1027
BspQI GCTCTTC 3 cut(s) 770, 2262, 2279
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 2136
BsrGI TGTACA 1 cut(s) 1084
BsrI ACTGG 2 cut(s) 1046, 2184
BssAI RCCGGY 1 cut(s) 2136
BssECI CCNNGG 2 cut(s) 1003, 1365
BssHII GCGCGC 1 cut(s) 808
BssMI GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
Bst2UI CCWGG 1 cut(s) 443
Bst6I CTCTTC 9 cut(s) 405, 521, 770, 1137, 1527, 1737, 1959, 2262, 2279
BstAPI GCANNNNNTGC 1 cut(s) 283
BstAUI TGTACA 1 cut(s) 1084
BstC8I GCNNGC 6 cut(s) 72, 279, 810, 905, 1953, 2138
BstDEI CTNAG 4 cut(s) 610, 909, 995, 1065
BstF5I GGATG 5 cut(s) 1013, 1162, 1554, 1883, 2509
BstFNI CGCG 4 cut(s) 810, 939, 1650, 1949
BstHHI GCGC 4 cut(s) 810, 812, 1449, 1951
BstKTI GATC 8 cut(s) 66, 114, 451, 609, 1022, 1539, 1561, 2461
BstMAI GTCTC 2 cut(s) 505, 1193
BstMBI GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
BstMWI GCNNNNNNNGC 7 cut(s) 67, 80, 283, 816, 1799, 1955, 2146
BstNI CCWGG 1 cut(s) 443
BstPAI GACNNNNGTC 2 cut(s) 83, 426
BstSCI CCNGG 4 cut(s) 441, 1022, 2036, 2084
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 4 cut(s) 810, 939, 1650, 1949
BstV1I GCAGC 8 cut(s) 331, 830, 877, 1768, 1856, 1879, 1942, 2210
BstV2I GAAGAC 4 cut(s) 651, 1451, 1950, 2064
BstX2I RGATCY 3 cut(s) 606, 1019, 1536
BstXI CCANNNNNNTGG 1 cut(s) 1333
BstYI RGATCY 3 cut(s) 606, 1019, 1536
BsuRI GGCC 5 cut(s) 385, 1139, 1394, 1634, 2136
BtsCI GGATG 5 cut(s) 1013, 1162, 1554, 1883, 2509
BtsI GCAGTG 3 cut(s) 288, 1059, 1304
BveI ACCTGC 1 cut(s) 2461
Cac8I GCNNGC 6 cut(s) 72, 279, 810, 905, 1953, 2138
CaiI CAGNNNCTG 1 cut(s) 1075
CfoI GCGC 4 cut(s) 810, 812, 1449, 1951
Cfr10I RCCGGY 1 cut(s) 2136
Cfr13I GGNCC 5 cut(s) 239, 428, 833, 1633, 2189
CseI GACGC 2 cut(s) 1295, 1955
Csp6I GTAC 5 cut(s) 16, 532, 1085, 2211, 2432
CviAII CATG 6 cut(s) 471, 793, 1873, 1909, 1940, 2319
CviQI GTAC 5 cut(s) 16, 532, 1085, 2211, 2432
DdeI CTNAG 4 cut(s) 610, 909, 995, 1065
DpnI GATC 8 cut(s) 65, 113, 450, 608, 1021, 1538, 1560, 2460
DpnII GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
DriI GACNNNNNGTC 1 cut(s) 2328
EaeI YGGCCR 1 cut(s) 2134
Eam1104I CTCTTC 9 cut(s) 405, 521, 770, 1137, 1527, 1737, 1959, 2262, 2279
Eam1105I GACNNNNNGTC 1 cut(s) 2328
EarI CTCTTC 9 cut(s) 405, 521, 770, 1137, 1527, 1737, 1959, 2262, 2279
EciI GGCGGA 1 cut(s) 2433
Ecl136II GAGCTC 2 cut(s) 1245, 2272
Eco147I AGGCCT 2 cut(s) 385, 1394
Eco24I GRGCYC 3 cut(s) 1058, 1247, 2274
Eco32I GATATC 2 cut(s) 1832, 2206
Eco47I GGWCC 4 cut(s) 239, 428, 833, 2189
Eco53kI GAGCTC 2 cut(s) 1245, 2272
Eco57I CTGAAG 5 cut(s) 30, 438, 605, 717, 1446
EcoICRI GAGCTC 2 cut(s) 1245, 2272
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 2 cut(s) 1832, 2206
EcoT22I ATGCAT 3 cut(s) 1358, 1711, 1921
EcoT38I GRGCYC 3 cut(s) 1058, 1247, 2274
Esp3I CGTCTC 1 cut(s) 1193
FaeI CATG 6 cut(s) 474, 796, 1876, 1912, 1943, 2322
FalI AAGNNNNNCTT 2 cut(s) 2421, 2453
FaqI GGGAC 1 cut(s) 414
FatI CATG 6 cut(s) 470, 792, 1872, 1908, 1939, 2318
FauI CCCGC 2 cut(s) 932, 2392
FauNDI CATATG 5 cut(s) 1151, 1682, 1921, 2007, 2194
Fnu4HI GCNGC 8 cut(s) 345, 844, 891, 1757, 1845, 1868, 1956, 2199
FokI GGATG 5 cut(s) 1020, 1169, 1561, 1890, 2516
FriOI GRGCYC 3 cut(s) 1058, 1247, 2274
Fsp4HI GCNGC 8 cut(s) 345, 844, 891, 1757, 1845, 1868, 1956, 2199
FspBI CTAG 9 cut(s) 975, 1283, 1415, 1716, 2049, 2096, 2141, 2150, 2346
FspI TGCGCA 1 cut(s) 1448
GlaI GCGC 4 cut(s) 809, 811, 1448, 1950
GluI GCNGC 8 cut(s) 345, 844, 891, 1757, 1845, 1868, 1956, 2199
GsaI CCCAGC 1 cut(s) 674
GsuI CTGGAG 1 cut(s) 2111
HaeIII GGCC 5 cut(s) 385, 1139, 1394, 1634, 2136
HapII CCGG 5 cut(s) 1023, 1136, 2037, 2085, 2137
HgaI GACGC 2 cut(s) 1295, 1955
HhaI GCGC 4 cut(s) 810, 812, 1449, 1951
Hin1II CATG 6 cut(s) 474, 796, 1876, 1912, 1943, 2322
Hin6I GCGC 4 cut(s) 808, 810, 1447, 1949
HinP1I GCGC 4 cut(s) 808, 810, 1447, 1949
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HindIII AAGCTT 4 cut(s) 117, 911, 952, 1812
HinfI GANTC 5 cut(s) 580, 1072, 1205, 1322, 2081
HpaII CCGG 5 cut(s) 1023, 1136, 2037, 2085, 2137
HphI GGTGA 2 cut(s) 22, 1451
Hpy166II GTNNAC 7 cut(s) 226, 363, 534, 565, 798, 1673, 2068
Hpy188I TCNGA 7 cut(s) 99, 264, 585, 950, 1545, 1665, 2528
Hpy188III TCNNGA 9 cut(s) 242, 521, 1076, 1216, 1343, 1407, 2224, 2411, 2509
Hpy8I GTNNAC 7 cut(s) 226, 363, 534, 565, 798, 1673, 2068
HpyAV CCTTC 9 cut(s) 54, 168, 462, 580, 593, 1391, 1606, 1715, 2235
HpyCH4IV ACGT 1 cut(s) 748
HpyF10VI GCNNNNNNNGC 7 cut(s) 67, 80, 283, 816, 1799, 1955, 2146
HpyF3I CTNAG 4 cut(s) 610, 909, 995, 1065
HpySE526I ACGT 1 cut(s) 748
Hsp92II CATG 6 cut(s) 474, 796, 1876, 1912, 1943, 2322
HspAI GCGC 4 cut(s) 808, 810, 1447, 1949
KroI GCCGGC 1 cut(s) 2136
KroNI GCCGGC 1 cut(s) 2138
Kzo9I GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
LguI GCTCTTC 3 cut(s) 770, 2262, 2279
LmnI GCTCC 6 cut(s) 887, 999, 1250, 1841, 2092, 2336
Lsp1109I GCAGC 8 cut(s) 331, 830, 877, 1768, 1856, 1879, 1942, 2210
MaeI CTAG 9 cut(s) 975, 1283, 1415, 1716, 2049, 2096, 2141, 2150, 2346
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 2 cut(s) 319, 2314
MalI GATC 8 cut(s) 65, 113, 450, 608, 1021, 1538, 1560, 2460
MboI GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
MfeI CAATTG 1 cut(s) 1473
MflI RGATCY 3 cut(s) 606, 1019, 1536
MhlI GDGCHC 5 cut(s) 72, 567, 1058, 1247, 2274
MlyI GAGTC 1 cut(s) 574
Mph1103I ATGCAT 3 cut(s) 1358, 1711, 1921
MroNI GCCGGC 1 cut(s) 2136
MseI TTAA 7 cut(s) 1107, 1167, 1494, 1595, 2112, 2229, 2300
MslI CAYNNNNRTG 2 cut(s) 2105, 2502
MspA1I CMGCKG 1 cut(s) 2201
MspI CCGG 5 cut(s) 1023, 1136, 2037, 2085, 2137
MspR9I CCNGG 4 cut(s) 443, 1024, 2038, 2086
MunI CAATTG 1 cut(s) 1473
Mva1269I GAATGC 1 cut(s) 1356
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 4 cut(s) 810, 939, 1650, 1949
MwoI GCNNNNNNNGC 7 cut(s) 67, 80, 283, 816, 1799, 1955, 2146
NaeI GCCGGC 1 cut(s) 2138
NciI CCSGG 3 cut(s) 1024, 2038, 2086
NdeI CATATG 5 cut(s) 1151, 1682, 1921, 2007, 2194
NdeII GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
NgoMIV GCCGGC 1 cut(s) 2136
NlaIII CATG 6 cut(s) 474, 796, 1876, 1912, 1943, 2322
NlaIV GGNNCC 5 cut(s) 240, 309, 430, 1001, 1021
NmeAIII GCCGAG 1 cut(s) 1028
NmuCI GTSAC 1 cut(s) 2314
NsbI TGCGCA 1 cut(s) 1448
NsiI ATGCAT 3 cut(s) 1358, 1711, 1921
OliI CACNNNNGTG 1 cut(s) 2105
PauI GCGCGC 1 cut(s) 808
PceI AGGCCT 2 cut(s) 385, 1394
PciSI GCTCTTC 3 cut(s) 770, 2262, 2279
PctI GAATGC 1 cut(s) 1356
PdiI GCCGGC 1 cut(s) 2138
PfeI GAWTC 4 cut(s) 1072, 1205, 1322, 2081
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 8 cut(s) 346, 845, 892, 1758, 1846, 1869, 1957, 2200
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PpuMI RGGWCCY 1 cut(s) 239
PshAI GACNNNNGTC 2 cut(s) 83, 426
PshBI ATTAAT 2 cut(s) 1167, 1494
PsiI TTATAA 1 cut(s) 1388
Psp124BI GAGCTC 2 cut(s) 1247, 2274
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 5 cut(s) 240, 309, 430, 1001, 1021
PspPI GGNCC 5 cut(s) 239, 428, 833, 1633, 2189
PspPPI RGGWCCY 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 1075
PsuI RGATCY 3 cut(s) 606, 1019, 1536
PteI GCGCGC 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 2201
RsaI GTAC 5 cut(s) 17, 533, 1086, 2212, 2433
RsaNI GTAC 5 cut(s) 16, 532, 1085, 2211, 2432
RseI CAYNNNNRTG 2 cut(s) 2105, 2502
SacI GAGCTC 2 cut(s) 1247, 2274
SapI GCTCTTC 3 cut(s) 770, 2262, 2279
SaqAI TTAA 7 cut(s) 1107, 1167, 1494, 1595, 2112, 2229, 2300
SatI GCNGC 8 cut(s) 345, 844, 891, 1757, 1845, 1868, 1956, 2199
Sau3AI GATC 8 cut(s) 63, 111, 448, 606, 1019, 1536, 1558, 2458
Sau96I GGNCC 5 cut(s) 239, 428, 833, 1633, 2189
ScaI AGTACT 2 cut(s) 17, 2433
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 4 cut(s) 443, 1024, 2038, 2086
SduI GDGCHC 5 cut(s) 72, 567, 1058, 1247, 2274
SinI GGWCC 4 cut(s) 239, 428, 833, 2189
SmiMI CAYNNNNRTG 2 cut(s) 2105, 2502
SmlI CTYRAG 3 cut(s) 521, 1775, 2449
SmoI CTYRAG 3 cut(s) 521, 1775, 2449
SseBI AGGCCT 2 cut(s) 385, 1394
SsiI CCGC 5 cut(s) 939, 1097, 1648, 2399, 2418
SspI AATATT 3 cut(s) 214, 654, 1603
SspMI CTAG 9 cut(s) 975, 1283, 1415, 1716, 2049, 2096, 2141, 2150, 2346
SstI GAGCTC 2 cut(s) 1247, 2274
StuI AGGCCT 2 cut(s) 385, 1394
StyD4I CCNGG 4 cut(s) 441, 1022, 2036, 2084
TaiI ACGT 1 cut(s) 751
TaqI TCGA 6 cut(s) 66, 250, 702, 1351, 1822, 2256
TatI WGTACW 4 cut(s) 15, 1084, 2210, 2431
TfiI GAWTC 4 cut(s) 1072, 1205, 1322, 2081
Tru1I TTAA 7 cut(s) 1107, 1167, 1494, 1595, 2112, 2229, 2300
Tru9I TTAA 7 cut(s) 1107, 1167, 1494, 1595, 2112, 2229, 2300
TseFI GTSAC 1 cut(s) 2314
TseI GCWGC 8 cut(s) 344, 843, 890, 1756, 1844, 1867, 1955, 2198
Tsp45I GTSAC 1 cut(s) 2314
TspDTI ATGAA 9 cut(s) 189, 450, 459, 555, 817, 1565, 1887, 1956, 1985
Van91I CCANNNNNTGG 1 cut(s) 215
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 4 cut(s) 239, 428, 833, 2189
VspI ATTAAT 2 cut(s) 1167, 1494
XapI RAATTY 4 cut(s) 944, 1038, 1851, 2376
XspI CTAG 9 cut(s) 975, 1283, 1415, 1716, 2049, 2096, 2141, 2150, 2346
ZrmI AGTACT 2 cut(s) 17, 2433
Zsp2I ATGCAT 3 cut(s) 1358, 1711, 1921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.