Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35130 AT2G35130 AT2G35130 |
| fragaria_vesca | FvH4_3g12360 |
| malus_domestica | MD05G1251300.v1.1 MD10G1231700.v1.1 MD10G1231800.v1.1 |
| prunus_persica | Prupe.4G112600_v2.0.a1 |
| pyrus_communis | pycom05g20750 pycom05g22900 pycom10g19500 pycom10g19510 |
| rosa_chinensis | RchiOBHm_Chr5g0020151 |
| rosa_laevigata | RLG00000032505 |
| rosa_roxburghii | Rroxscaffold_1G00058050 |
| rosa_rugosa | Rorug05G0057400 Rorug05G0057500 |
| rosa_samantha | Rh5AG147600 Rh5AG147700 Rh5BG147200 Rh5CG158600 Rh5DG146500 |
| rosa_wichuraiana | Rw5G013050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1005 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1313 |
| Acc36I | ACCTGC | 1 cut(s) | 1669 |
| AccI | GTMKAC | 1 cut(s) | 899 |
| AciI | CCGC | 1 cut(s) | 524 |
| AclWI | GGATC | 2 cut(s) | 222, 235 |
| AcoI | YGGCCR | 1 cut(s) | 1342 |
| AcsI | RAATTY | 4 cut(s) | 152, 327, 1059, 1584 |
| AcuI | CTGAAG | 2 cut(s) | 594, 654 |
| AfaI | GTAC | 5 cut(s) | 294, 446, 1420, 1641, 1687 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1624, 1625 |
| AgsI | TTSAA | 9 cut(s) | 14, 166, 389, 460, 554, 1172, 1487, 1592, 1659 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1536 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 627, 659 |
| Alw21I | GWGCWC | 2 cut(s) | 455, 1482 |
| Alw26I | GTCTC | 1 cut(s) | 401 |
| AlwI | GGATC | 2 cut(s) | 222, 235 |
| AoxI | GGCC | 4 cut(s) | 41, 600, 840, 1342 |
| ApeKI | GCWGC | 5 cut(s) | 487, 1052, 1075, 1219, 1406 |
| ApoI | RAATTY | 4 cut(s) | 152, 327, 1059, 1584 |
| AseI | ATTAAT | 1 cut(s) | 702 |
| AspS9I | GGNCC | 4 cut(s) | 41, 286, 600, 1397 |
| AsuC2I | CCSGG | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 1 cut(s) | 659 |
| AvaII | GGWCC | 2 cut(s) | 286, 1397 |
| BamHI | GGATCC | 1 cut(s) | 227 |
| BanII | GRGCYC | 4 cut(s) | 266, 416, 455, 1482 |
| BauI | CACGAG | 1 cut(s) | 983 |
| BbsI | GAAGAC | 3 cut(s) | 582, 659, 1136 |
| Bbv12I | GWGCWC | 2 cut(s) | 455, 1482 |
| BbvI | GCAGC | 5 cut(s) | 474, 1039, 1087, 1206, 1418 |
| BccI | CCATC | 8 cut(s) | 29, 66, 210, 236, 787, 1360, 1465, 1616 |
| BceAI | ACGGC | 1 cut(s) | 623 |
| BcnI | CCSGG | 1 cut(s) | 232 |
| BcoDI | GTCTC | 1 cut(s) | 401 |
| BfaI | CTAG | 7 cut(s) | 183, 491, 623, 740, 924, 1304, 1554 |
| BfmI | CTRYAG | 2 cut(s) | 52, 1053 |
| BfuAI | ACCTGC | 1 cut(s) | 1669 |
| BglII | AGATCT | 1 cut(s) | 744 |
| BisI | GCNGC | 6 cut(s) | 488, 525, 1053, 1076, 1220, 1407 |
| BlsI | GCNGC | 6 cut(s) | 489, 526, 1054, 1077, 1221, 1408 |
| BmcAI | AGTACT | 2 cut(s) | 1641, 1687 |
| Bme1390I | CCNGG | 1 cut(s) | 232 |
| Bme18I | GGWCC | 2 cut(s) | 286, 1397 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1536 |
| BmgT120I | GGNCC | 4 cut(s) | 41, 286, 600, 1397 |
| BmiI | GGNNCC | 2 cut(s) | 229, 415 |
| BmrFI | CCNGG | 1 cut(s) | 232 |
| BmrI | ACTGGG | 1 cut(s) | 248 |
| BmuI | ACTGGG | 1 cut(s) | 248 |
| BpiI | GAAGAC | 3 cut(s) | 582, 659, 1136 |
| BpmI | CTGGAG | 1 cut(s) | 1319 |
| BpuMI | CCSGG | 1 cut(s) | 232 |
| BsaAI | YACGTR | 1 cut(s) | 897 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 437, 467, 1126, 1156 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1624, 1625 |
| Bse118I | RCCGGY | 1 cut(s) | 1344 |
| Bse1I | ACTGG | 2 cut(s) | 254, 274 |
| Bse3DI | GCAATG | 2 cut(s) | 1255, 1392 |
| BseGI | GGATG | 5 cut(s) | 221, 370, 564, 762, 1091 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1624, 1625 |
| BseMI | GCAATG | 2 cut(s) | 1255, 1392 |
| BseMII | CTCAG | 1 cut(s) | 587 |
| BseNI | ACTGG | 2 cut(s) | 254, 274 |
| BseXI | GCAGC | 5 cut(s) | 474, 1039, 1087, 1206, 1418 |
| BsgI | GTGCAG | 1 cut(s) | 1053 |
| BshFI | GGCC | 4 cut(s) | 43, 602, 842, 1344 |
| BsiHKAI | GWGCWC | 2 cut(s) | 455, 1482 |
| BsiSI | CCGG | 2 cut(s) | 231, 1345 |
| BslFI | GGGAC | 1 cut(s) | 1732 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1624, 1625 |
| BsmAI | GTCTC | 1 cut(s) | 401 |
| BsmBI | CGTCTC | 1 cut(s) | 401 |
| BsmFI | GGGAC | 1 cut(s) | 1732 |
| BsnI | GGCC | 4 cut(s) | 43, 602, 842, 1344 |
| Bsp1286I | GDGCHC | 4 cut(s) | 266, 416, 455, 1482 |
| Bsp1407I | TGTACA | 2 cut(s) | 292, 444 |
| Bsp143I | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| BspACI | CCGC | 1 cut(s) | 524 |
| BspANI | GGCC | 4 cut(s) | 43, 602, 842, 1344 |
| BspCNI | CTCAG | 1 cut(s) | 588 |
| BspHI | TCATGA | 1 cut(s) | 1147 |
| BspLI | GGNNCC | 2 cut(s) | 229, 415 |
| BspMAI | CTGCAG | 1 cut(s) | 1057 |
| BspMI | ACCTGC | 1 cut(s) | 1669 |
| BspPI | GGATC | 2 cut(s) | 222, 235 |
| BspQI | GCTCTTC | 2 cut(s) | 107, 1470 |
| BsrDI | GCAATG | 2 cut(s) | 1255, 1392 |
| BsrFI | RCCGGY | 1 cut(s) | 1344 |
| BsrGI | TGTACA | 2 cut(s) | 292, 444 |
| BsrI | ACTGG | 2 cut(s) | 254, 274 |
| BssAI | RCCGGY | 1 cut(s) | 1344 |
| BssMI | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| BssNAI | GTATAC | 1 cut(s) | 900 |
| BssSI | CACGAG | 1 cut(s) | 983 |
| Bst1107I | GTATAC | 1 cut(s) | 900 |
| Bst2BI | CACGAG | 1 cut(s) | 983 |
| Bst4CI | ACNGT | 6 cut(s) | 408, 1028, 1204, 1325, 1690, 1723 |
| Bst6I | CTCTTC | 3 cut(s) | 107, 1167, 1470 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1163 |
| BstAUI | TGTACA | 2 cut(s) | 292, 444 |
| BstBAI | YACGTR | 1 cut(s) | 897 |
| BstC8I | GCNNGC | 2 cut(s) | 119, 1246 |
| BstDEI | CTNAG | 2 cut(s) | 203, 596 |
| BstF5I | GGATG | 5 cut(s) | 221, 370, 564, 762, 1091 |
| BstKTI | GATC | 4 cut(s) | 230, 747, 769, 1669 |
| BstMAI | GTCTC | 1 cut(s) | 401 |
| BstMBI | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 511, 1007, 1163 |
| BstNSI | RCATGY | 1 cut(s) | 1656 |
| BstSCI | CCNGG | 1 cut(s) | 230 |
| BstSFI | CTRYAG | 2 cut(s) | 52, 1053 |
| BstV1I | GCAGC | 5 cut(s) | 474, 1039, 1087, 1206, 1418 |
| BstV2I | GAAGAC | 3 cut(s) | 582, 659, 1136 |
| BstX2I | RGATCY | 2 cut(s) | 227, 744 |
| BstYI | RGATCY | 2 cut(s) | 227, 744 |
| BstZ17I | GTATAC | 1 cut(s) | 900 |
| BsuRI | GGCC | 4 cut(s) | 43, 602, 842, 1344 |
| BtsCI | GGATG | 5 cut(s) | 221, 370, 564, 762, 1091 |
| BtsIMutI | CAGTG | 5 cut(s) | 261, 267, 413, 570, 1209 |
| BveI | ACCTGC | 1 cut(s) | 1669 |
| Cac8I | GCNNGC | 2 cut(s) | 119, 1246 |
| CciI | TCATGA | 1 cut(s) | 1147 |
| Cfr10I | RCCGGY | 1 cut(s) | 1344 |
| Cfr13I | GGNCC | 4 cut(s) | 41, 286, 600, 1397 |
| Csp6I | GTAC | 5 cut(s) | 293, 445, 1419, 1640, 1686 |
| CviAII | CATG | 6 cut(s) | 838, 1072, 1081, 1117, 1148, 1653 |
| CviQI | GTAC | 5 cut(s) | 293, 445, 1419, 1640, 1686 |
| DdeI | CTNAG | 2 cut(s) | 203, 596 |
| DpnI | GATC | 4 cut(s) | 229, 746, 768, 1668 |
| DpnII | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1313 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1536 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1313 |
| EaeI | YGGCCR | 1 cut(s) | 1342 |
| Eam1104I | CTCTTC | 3 cut(s) | 107, 1167, 1470 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1536 |
| EarI | CTCTTC | 3 cut(s) | 107, 1167, 1470 |
| Ecl136II | GAGCTC | 2 cut(s) | 453, 1480 |
| Eco24I | GRGCYC | 4 cut(s) | 266, 416, 455, 1482 |
| Eco32I | GATATC | 3 cut(s) | 370, 1414, 1714 |
| Eco47I | GGWCC | 2 cut(s) | 286, 1397 |
| Eco53kI | GAGCTC | 2 cut(s) | 453, 1480 |
| Eco57I | CTGAAG | 2 cut(s) | 594, 654 |
| EcoICRI | GAGCTC | 2 cut(s) | 453, 1480 |
| EcoO109I | RGGNCCY | 1 cut(s) | 600 |
| EcoRV | GATATC | 3 cut(s) | 370, 1414, 1714 |
| EcoT22I | ATGCAT | 3 cut(s) | 566, 919, 1129 |
| EcoT38I | GRGCYC | 4 cut(s) | 266, 416, 455, 1482 |
| Esp3I | CGTCTC | 1 cut(s) | 401 |
| FaeI | CATG | 6 cut(s) | 841, 1075, 1084, 1120, 1151, 1656 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 440, 472, 1629, 1661 |
| FaqI | GGGAC | 1 cut(s) | 1732 |
| FatI | CATG | 6 cut(s) | 837, 1071, 1080, 1116, 1147, 1652 |
| FauNDI | CATATG | 5 cut(s) | 359, 890, 1129, 1215, 1402 |
| FblI | GTMKAC | 1 cut(s) | 899 |
| Fnu4HI | GCNGC | 6 cut(s) | 488, 525, 1053, 1076, 1220, 1407 |
| FokI | GGATG | 5 cut(s) | 228, 377, 551, 769, 1098 |
| FriOI | GRGCYC | 4 cut(s) | 266, 416, 455, 1482 |
| Fsp4HI | GCNGC | 6 cut(s) | 488, 525, 1053, 1076, 1220, 1407 |
| FspBI | CTAG | 7 cut(s) | 183, 491, 623, 740, 924, 1304, 1554 |
| GluI | GCNGC | 6 cut(s) | 488, 525, 1053, 1076, 1220, 1407 |
| GsuI | CTGGAG | 1 cut(s) | 1319 |
| HaeIII | GGCC | 4 cut(s) | 43, 602, 842, 1344 |
| HapII | CCGG | 2 cut(s) | 231, 1345 |
| Hin1II | CATG | 6 cut(s) | 841, 1075, 1084, 1120, 1151, 1656 |
| HindIII | AAGCTT | 2 cut(s) | 160, 1020 |
| HinfI | GANTC | 3 cut(s) | 48, 280, 530 |
| HpaII | CCGG | 2 cut(s) | 231, 1345 |
| HphI | GGTGA | 1 cut(s) | 659 |
| Hpy166II | GTNNAC | 4 cut(s) | 881, 900, 1091, 1276 |
| Hpy188I | TCNGA | 7 cut(s) | 71, 158, 276, 597, 753, 873, 1736 |
| Hpy8I | GTNNAC | 4 cut(s) | 881, 900, 1091, 1276 |
| Hpy99I | CGWCG | 1 cut(s) | 802 |
| HpyAV | CCTTC | 4 cut(s) | 292, 466, 599, 923 |
| HpyCH4III | ACNGT | 6 cut(s) | 408, 1028, 1204, 1325, 1690, 1723 |
| HpyCH4IV | ACGT | 4 cut(s) | 145, 800, 896, 993 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 511, 1007, 1163 |
| HpyF3I | CTNAG | 2 cut(s) | 203, 596 |
| HpySE526I | ACGT | 4 cut(s) | 145, 800, 896, 993 |
| Hsp92II | CATG | 6 cut(s) | 841, 1075, 1084, 1120, 1151, 1656 |
| Kzo9I | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| LguI | GCTCTTC | 2 cut(s) | 107, 1470 |
| LmnI | GCTCC | 6 cut(s) | 101, 419, 458, 1300, 1544, 1649 |
| Lsp1109I | GCAGC | 5 cut(s) | 474, 1039, 1087, 1206, 1418 |
| MaeI | CTAG | 7 cut(s) | 183, 491, 623, 740, 924, 1304, 1554 |
| MaeII | ACGT | 4 cut(s) | 145, 800, 896, 993 |
| MaeIII | GTNAC | 3 cut(s) | 122, 1252, 1522 |
| MalI | GATC | 4 cut(s) | 229, 746, 768, 1668 |
| MboI | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| MflI | RGATCY | 2 cut(s) | 227, 744 |
| MhlI | GDGCHC | 4 cut(s) | 266, 416, 455, 1482 |
| MluCI | AATT | 7 cut(s) | 64, 152, 327, 481, 808, 1059, 1584 |
| MmeI | TCCRAC | 1 cut(s) | 1520 |
| Mph1103I | ATGCAT | 3 cut(s) | 566, 919, 1129 |
| MseI | TTAA | 9 cut(s) | 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1152 |
| MspA1I | CMGCKG | 1 cut(s) | 1409 |
| MspI | CCGG | 2 cut(s) | 231, 1345 |
| MspR9I | CCNGG | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 511, 1007, 1163 |
| NciI | CCSGG | 1 cut(s) | 232 |
| NdeI | CATATG | 5 cut(s) | 359, 890, 1129, 1215, 1402 |
| NdeII | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| NlaIII | CATG | 6 cut(s) | 841, 1075, 1084, 1120, 1151, 1656 |
| NlaIV | GGNNCC | 2 cut(s) | 229, 415 |
| NmuCI | GTSAC | 2 cut(s) | 122, 1522 |
| NsiI | ATGCAT | 3 cut(s) | 566, 919, 1129 |
| NspI | RCATGY | 1 cut(s) | 1656 |
| PagI | TCATGA | 1 cut(s) | 1147 |
| PciSI | GCTCTTC | 2 cut(s) | 107, 1470 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 990 |
| PfeI | GAWTC | 3 cut(s) | 48, 280, 530 |
| PkrI | GCNGC | 6 cut(s) | 489, 526, 1054, 1077, 1221, 1408 |
| Ppu21I | YACGTR | 1 cut(s) | 897 |
| PshBI | ATTAAT | 1 cut(s) | 702 |
| PsiI | TTATAA | 1 cut(s) | 1005 |
| Psp124BI | GAGCTC | 2 cut(s) | 455, 1482 |
| PspN4I | GGNNCC | 2 cut(s) | 229, 415 |
| PspPI | GGNCC | 4 cut(s) | 41, 286, 600, 1397 |
| PstI | CTGCAG | 1 cut(s) | 1057 |
| PsuI | RGATCY | 2 cut(s) | 227, 744 |
| PvuII | CAGCTG | 1 cut(s) | 1409 |
| RsaI | GTAC | 5 cut(s) | 294, 446, 1420, 1641, 1687 |
| RsaNI | GTAC | 5 cut(s) | 293, 445, 1419, 1640, 1686 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1152 |
| SacI | GAGCTC | 2 cut(s) | 455, 1482 |
| SapI | GCTCTTC | 2 cut(s) | 107, 1470 |
| SaqAI | TTAA | 9 cut(s) | 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508 |
| SatI | GCNGC | 6 cut(s) | 488, 525, 1053, 1076, 1220, 1407 |
| Sau3AI | GATC | 4 cut(s) | 227, 744, 766, 1666 |
| Sau96I | GGNCC | 4 cut(s) | 41, 286, 600, 1397 |
| ScaI | AGTACT | 2 cut(s) | 1641, 1687 |
| ScrFI | CCNGG | 1 cut(s) | 232 |
| SduI | GDGCHC | 4 cut(s) | 266, 416, 455, 1482 |
| SfcI | CTRYAG | 2 cut(s) | 52, 1053 |
| SinI | GGWCC | 2 cut(s) | 286, 1397 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1152 |
| Sse9I | AATT | 7 cut(s) | 64, 152, 327, 481, 808, 1059, 1584 |
| SsiI | CCGC | 1 cut(s) | 524 |
| SspI | AATATT | 1 cut(s) | 957 |
| SspMI | CTAG | 7 cut(s) | 183, 491, 623, 740, 924, 1304, 1554 |
| SstI | GAGCTC | 2 cut(s) | 455, 1482 |
| StyD4I | CCNGG | 1 cut(s) | 230 |
| TaaI | ACNGT | 6 cut(s) | 408, 1028, 1204, 1325, 1690, 1723 |
| TaiI | ACGT | 4 cut(s) | 148, 803, 899, 996 |
| TaqI | TCGA | 4 cut(s) | 108, 559, 690, 1464 |
| TasI | AATT | 7 cut(s) | 64, 152, 327, 481, 808, 1059, 1584 |
| TatI | WGTACW | 5 cut(s) | 292, 444, 1418, 1639, 1685 |
| TauI | GCSGC | 1 cut(s) | 527 |
| TfiI | GAWTC | 3 cut(s) | 48, 280, 530 |
| Tru1I | TTAA | 9 cut(s) | 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508 |
| Tru9I | TTAA | 9 cut(s) | 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508 |
| TscAI | CASTG | 5 cut(s) | 261, 274, 413, 577, 1209 |
| TseFI | GTSAC | 2 cut(s) | 122, 1522 |
| TseI | GCWGC | 5 cut(s) | 487, 1052, 1075, 1219, 1406 |
| Tsp45I | GTSAC | 2 cut(s) | 122, 1522 |
| TspDTI | ATGAA | 6 cut(s) | 25, 773, 1095, 1136, 1164, 1193 |
| TspRI | CASTG | 5 cut(s) | 261, 274, 413, 577, 1209 |
| VpaK11BI | GGWCC | 2 cut(s) | 286, 1397 |
| VspI | ATTAAT | 1 cut(s) | 702 |
| XapI | RAATTY | 4 cut(s) | 152, 327, 1059, 1584 |
| XbaI | TCTAGA | 1 cut(s) | 1553 |
| XceI | RCATGY | 1 cut(s) | 1656 |
| XmiI | GTMKAC | 1 cut(s) | 899 |
| XspI | CTAG | 7 cut(s) | 183, 491, 623, 740, 924, 1304, 1554 |
| ZrmI | AGTACT | 2 cut(s) | 1641, 1687 |
| Zsp2I | ATGCAT | 3 cut(s) | 566, 919, 1129 |