Prupe.4G112600_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
5966064 .. 5970012
3949 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G112600.1

Sequence Viewer

Length: 1737 bp
ATGTTGATTGTTGAATGTGCCATCAGTTATATTTTCATTGGGCCAAGAATCTGTAGTAAGAGTAATTTCAGATGGAAAATCAAGAGTTCCATTGGTGGTGGAGCTGTCGAGAAGAGCAAGCGTGACAGCCTGTATATTGACAAACGTGGAAAATTCAGAAGCTTCAACAACAAGAAAATGTCTAGGAAACGATGTGGTTCTCTAAGGGGGCGAGGATGGAAATATGGATCCGGGTTTGTTGATGGAGTTTTCCCAGTGATGAGCCCCACTGGTCAGAAGATTCTGGACCTTGTACAGAAGGAAGTTGATAAAAGCAGTATTTGGGAAATTCTTGATACACTTCCAGCCTCTCATACCATATGGGATGATATCATCAATGTCGCTGTTCAACTTCGTCTCAATAAACAGTGGGGCTCCATTATCTTGATATGTGAGTGGATATTGTACAAGAGCTCCTTCAAGCCAGATGTCATCTGCTACAATTTGCTGCTAGATGCTTATGGGCAGAAATCGCAACATAAAGCGGCAGAATCAACATATTTAGAACTTCTTGAAGCTCGATGCATCCCCACTGAAGACACTTATGCCCTTCTTCTGAGGGCCTACTGCAAGTCTGGATTGCTAGATAAGGCTGAAGCCGTCTTTGGTGAAATGAGAAAGTATGGTCTTCCTCCAAGTGCAATCGTGTTCGATGCTTATATTAATGGGTTAATAAAAGGAGGAAACCCTCAAAAAGCACTAGAGATCTTTCAGAGGATGAAAAGAGATCAATGCCAACCATCTACTGACACATATACGACGTTAATCAATTTATATGGAAAGGAAAGAAAATCCCACATGGCCTTAAAGCTGTTTCACGAAATGAGAAGTCAGAAATGTAAACCCAACATATGCACGTATACTGCTTTGGTAAATGCATTTGCTAGGGAAGGACTTTGTGAGAAAGCAGAAGAAATATTTGAGCAGATGCAAGAAGCAGGACACGAGCCTGACGTTTATGCTTATAATGCACTTATGGAAGCTTACAGTCGTGCAGGGTTTCCTTATGGGGCTGCAGAAATTTTCTCTCTCATGCAGCACATGGGATGTGAACCCGATAGAGCTTCATATAATATCATGGTAGATGCATATGGGAGAGCTGGTCTTCATGAAGATGCAGAAGTTGCATTTGAAGAGATGAAGCGATTAGGAATAACCCCAACAGTGAAATCCCATATGCTGCTTTTATCTGCCTACTCCAAAGCTGGCAATGTAACAAAATGTGAGGACATTGTGAACCAGATGCAAAAGTCTGGGCTGGAGCTAGACACCTTTGTCATTAACAGTATGTTAAACCTCTATGGCCGGTTAGGTCAGTTAAAAAAGATGGAGGAAGTTTTGACTGCAATGGAAAAAGGACCATATGCAGCTGATATCAGTACATACAACATCTTGATTAACATTTATGGACGGGCAGGGTTTTTCGAGAAGATGGAAGAGCTCTTTCAATCACTTCCAACCAAAAACTTAAAACCTGATGTTGTGACTTGGACTTCTCGTCTTGGAGCATACTCTAGAAAGAAACTATACAAAAGATGCTTGGAAATTTTTGAAGAAATGATTGATGCTGGTTGCTACCCAGATGGGGGAACTGCCAAAGTACTTCTTGGAGCATGTTCAAGTGAAGATCAAACCGAGCAGGTTAGTACTGTTATTAGAACAATGCACAAGGATATCGGGACTGTTTTACCTATCTGA

Protein Analysis

579

Amino Acids

65.24

Weight (kDa)

8.49

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
AasI GACNNNNNNGTC 1 cut(s) 1313
Acc36I ACCTGC 1 cut(s) 1669
AccI GTMKAC 1 cut(s) 899
AciI CCGC 1 cut(s) 524
AclWI GGATC 2 cut(s) 222, 235
AcoI YGGCCR 1 cut(s) 1342
AcsI RAATTY 4 cut(s) 152, 327, 1059, 1584
AcuI CTGAAG 2 cut(s) 594, 654
AfaI GTAC 5 cut(s) 294, 446, 1420, 1641, 1687
AfiI CCNNNNNNNGG 2 cut(s) 1624, 1625
AgsI TTSAA 9 cut(s) 14, 166, 389, 460, 554, 1172, 1487, 1592, 1659
AhdI GACNNNNNGTC 1 cut(s) 1536
AjuI GAANNNNNNNTTGG 2 cut(s) 627, 659
Alw21I GWGCWC 2 cut(s) 455, 1482
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 2 cut(s) 222, 235
AoxI GGCC 4 cut(s) 41, 600, 840, 1342
ApeKI GCWGC 5 cut(s) 487, 1052, 1075, 1219, 1406
ApoI RAATTY 4 cut(s) 152, 327, 1059, 1584
AseI ATTAAT 1 cut(s) 702
AspS9I GGNCC 4 cut(s) 41, 286, 600, 1397
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 659
AvaII GGWCC 2 cut(s) 286, 1397
BamHI GGATCC 1 cut(s) 227
BanII GRGCYC 4 cut(s) 266, 416, 455, 1482
BauI CACGAG 1 cut(s) 983
BbsI GAAGAC 3 cut(s) 582, 659, 1136
Bbv12I GWGCWC 2 cut(s) 455, 1482
BbvI GCAGC 5 cut(s) 474, 1039, 1087, 1206, 1418
BccI CCATC 8 cut(s) 29, 66, 210, 236, 787, 1360, 1465, 1616
BceAI ACGGC 1 cut(s) 623
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 7 cut(s) 183, 491, 623, 740, 924, 1304, 1554
BfmI CTRYAG 2 cut(s) 52, 1053
BfuAI ACCTGC 1 cut(s) 1669
BglII AGATCT 1 cut(s) 744
BisI GCNGC 6 cut(s) 488, 525, 1053, 1076, 1220, 1407
BlsI GCNGC 6 cut(s) 489, 526, 1054, 1077, 1221, 1408
BmcAI AGTACT 2 cut(s) 1641, 1687
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 2 cut(s) 286, 1397
BmeRI GACNNNNNGTC 1 cut(s) 1536
BmgT120I GGNCC 4 cut(s) 41, 286, 600, 1397
BmiI GGNNCC 2 cut(s) 229, 415
BmrFI CCNGG 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 248
BpiI GAAGAC 3 cut(s) 582, 659, 1136
BpmI CTGGAG 1 cut(s) 1319
BpuMI CCSGG 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 897
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 1126, 1156
Bsc4I CCNNNNNNNGG 2 cut(s) 1624, 1625
Bse118I RCCGGY 1 cut(s) 1344
Bse1I ACTGG 2 cut(s) 254, 274
Bse3DI GCAATG 2 cut(s) 1255, 1392
BseGI GGATG 5 cut(s) 221, 370, 564, 762, 1091
BseLI CCNNNNNNNGG 2 cut(s) 1624, 1625
BseMI GCAATG 2 cut(s) 1255, 1392
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 2 cut(s) 254, 274
BseXI GCAGC 5 cut(s) 474, 1039, 1087, 1206, 1418
BsgI GTGCAG 1 cut(s) 1053
BshFI GGCC 4 cut(s) 43, 602, 842, 1344
BsiHKAI GWGCWC 2 cut(s) 455, 1482
BsiSI CCGG 2 cut(s) 231, 1345
BslFI GGGAC 1 cut(s) 1732
BslI CCNNNNNNNGG 2 cut(s) 1624, 1625
BsmAI GTCTC 1 cut(s) 401
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 1732
BsnI GGCC 4 cut(s) 43, 602, 842, 1344
Bsp1286I GDGCHC 4 cut(s) 266, 416, 455, 1482
Bsp1407I TGTACA 2 cut(s) 292, 444
Bsp143I GATC 4 cut(s) 227, 744, 766, 1666
BspACI CCGC 1 cut(s) 524
BspANI GGCC 4 cut(s) 43, 602, 842, 1344
BspCNI CTCAG 1 cut(s) 588
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 2 cut(s) 229, 415
BspMAI CTGCAG 1 cut(s) 1057
BspMI ACCTGC 1 cut(s) 1669
BspPI GGATC 2 cut(s) 222, 235
BspQI GCTCTTC 2 cut(s) 107, 1470
BsrDI GCAATG 2 cut(s) 1255, 1392
BsrFI RCCGGY 1 cut(s) 1344
BsrGI TGTACA 2 cut(s) 292, 444
BsrI ACTGG 2 cut(s) 254, 274
BssAI RCCGGY 1 cut(s) 1344
BssMI GATC 4 cut(s) 227, 744, 766, 1666
BssNAI GTATAC 1 cut(s) 900
BssSI CACGAG 1 cut(s) 983
Bst1107I GTATAC 1 cut(s) 900
Bst2BI CACGAG 1 cut(s) 983
Bst4CI ACNGT 6 cut(s) 408, 1028, 1204, 1325, 1690, 1723
Bst6I CTCTTC 3 cut(s) 107, 1167, 1470
BstAPI GCANNNNNTGC 1 cut(s) 1163
BstAUI TGTACA 2 cut(s) 292, 444
BstBAI YACGTR 1 cut(s) 897
BstC8I GCNNGC 2 cut(s) 119, 1246
BstDEI CTNAG 2 cut(s) 203, 596
BstF5I GGATG 5 cut(s) 221, 370, 564, 762, 1091
BstKTI GATC 4 cut(s) 230, 747, 769, 1669
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 4 cut(s) 227, 744, 766, 1666
BstMWI GCNNNNNNNGC 3 cut(s) 511, 1007, 1163
BstNSI RCATGY 1 cut(s) 1656
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 2 cut(s) 52, 1053
BstV1I GCAGC 5 cut(s) 474, 1039, 1087, 1206, 1418
BstV2I GAAGAC 3 cut(s) 582, 659, 1136
BstX2I RGATCY 2 cut(s) 227, 744
BstYI RGATCY 2 cut(s) 227, 744
BstZ17I GTATAC 1 cut(s) 900
BsuRI GGCC 4 cut(s) 43, 602, 842, 1344
BtsCI GGATG 5 cut(s) 221, 370, 564, 762, 1091
BtsIMutI CAGTG 5 cut(s) 261, 267, 413, 570, 1209
BveI ACCTGC 1 cut(s) 1669
Cac8I GCNNGC 2 cut(s) 119, 1246
CciI TCATGA 1 cut(s) 1147
Cfr10I RCCGGY 1 cut(s) 1344
Cfr13I GGNCC 4 cut(s) 41, 286, 600, 1397
Csp6I GTAC 5 cut(s) 293, 445, 1419, 1640, 1686
CviAII CATG 6 cut(s) 838, 1072, 1081, 1117, 1148, 1653
CviQI GTAC 5 cut(s) 293, 445, 1419, 1640, 1686
DdeI CTNAG 2 cut(s) 203, 596
DpnI GATC 4 cut(s) 229, 746, 768, 1668
DpnII GATC 4 cut(s) 227, 744, 766, 1666
DrdI GACNNNNNNGTC 1 cut(s) 1313
DriI GACNNNNNGTC 1 cut(s) 1536
DseDI GACNNNNNNGTC 1 cut(s) 1313
EaeI YGGCCR 1 cut(s) 1342
Eam1104I CTCTTC 3 cut(s) 107, 1167, 1470
Eam1105I GACNNNNNGTC 1 cut(s) 1536
EarI CTCTTC 3 cut(s) 107, 1167, 1470
Ecl136II GAGCTC 2 cut(s) 453, 1480
Eco24I GRGCYC 4 cut(s) 266, 416, 455, 1482
Eco32I GATATC 3 cut(s) 370, 1414, 1714
Eco47I GGWCC 2 cut(s) 286, 1397
Eco53kI GAGCTC 2 cut(s) 453, 1480
Eco57I CTGAAG 2 cut(s) 594, 654
EcoICRI GAGCTC 2 cut(s) 453, 1480
EcoO109I RGGNCCY 1 cut(s) 600
EcoRV GATATC 3 cut(s) 370, 1414, 1714
EcoT22I ATGCAT 3 cut(s) 566, 919, 1129
EcoT38I GRGCYC 4 cut(s) 266, 416, 455, 1482
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 6 cut(s) 841, 1075, 1084, 1120, 1151, 1656
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 1629, 1661
FaqI GGGAC 1 cut(s) 1732
FatI CATG 6 cut(s) 837, 1071, 1080, 1116, 1147, 1652
FauNDI CATATG 5 cut(s) 359, 890, 1129, 1215, 1402
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 6 cut(s) 488, 525, 1053, 1076, 1220, 1407
FokI GGATG 5 cut(s) 228, 377, 551, 769, 1098
FriOI GRGCYC 4 cut(s) 266, 416, 455, 1482
Fsp4HI GCNGC 6 cut(s) 488, 525, 1053, 1076, 1220, 1407
FspBI CTAG 7 cut(s) 183, 491, 623, 740, 924, 1304, 1554
GluI GCNGC 6 cut(s) 488, 525, 1053, 1076, 1220, 1407
GsuI CTGGAG 1 cut(s) 1319
HaeIII GGCC 4 cut(s) 43, 602, 842, 1344
HapII CCGG 2 cut(s) 231, 1345
Hin1II CATG 6 cut(s) 841, 1075, 1084, 1120, 1151, 1656
HindIII AAGCTT 2 cut(s) 160, 1020
HinfI GANTC 3 cut(s) 48, 280, 530
HpaII CCGG 2 cut(s) 231, 1345
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 4 cut(s) 881, 900, 1091, 1276
Hpy188I TCNGA 7 cut(s) 71, 158, 276, 597, 753, 873, 1736
Hpy8I GTNNAC 4 cut(s) 881, 900, 1091, 1276
Hpy99I CGWCG 1 cut(s) 802
HpyAV CCTTC 4 cut(s) 292, 466, 599, 923
HpyCH4III ACNGT 6 cut(s) 408, 1028, 1204, 1325, 1690, 1723
HpyCH4IV ACGT 4 cut(s) 145, 800, 896, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 511, 1007, 1163
HpyF3I CTNAG 2 cut(s) 203, 596
HpySE526I ACGT 4 cut(s) 145, 800, 896, 993
Hsp92II CATG 6 cut(s) 841, 1075, 1084, 1120, 1151, 1656
Kzo9I GATC 4 cut(s) 227, 744, 766, 1666
LguI GCTCTTC 2 cut(s) 107, 1470
LmnI GCTCC 6 cut(s) 101, 419, 458, 1300, 1544, 1649
Lsp1109I GCAGC 5 cut(s) 474, 1039, 1087, 1206, 1418
MaeI CTAG 7 cut(s) 183, 491, 623, 740, 924, 1304, 1554
MaeII ACGT 4 cut(s) 145, 800, 896, 993
MaeIII GTNAC 3 cut(s) 122, 1252, 1522
MalI GATC 4 cut(s) 229, 746, 768, 1668
MboI GATC 4 cut(s) 227, 744, 766, 1666
MflI RGATCY 2 cut(s) 227, 744
MhlI GDGCHC 4 cut(s) 266, 416, 455, 1482
MluCI AATT 7 cut(s) 64, 152, 327, 481, 808, 1059, 1584
MmeI TCCRAC 1 cut(s) 1520
Mph1103I ATGCAT 3 cut(s) 566, 919, 1129
MseI TTAA 9 cut(s) 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508
MslI CAYNNNNRTG 1 cut(s) 1152
MspA1I CMGCKG 1 cut(s) 1409
MspI CCGG 2 cut(s) 231, 1345
MspR9I CCNGG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 511, 1007, 1163
NciI CCSGG 1 cut(s) 232
NdeI CATATG 5 cut(s) 359, 890, 1129, 1215, 1402
NdeII GATC 4 cut(s) 227, 744, 766, 1666
NlaIII CATG 6 cut(s) 841, 1075, 1084, 1120, 1151, 1656
NlaIV GGNNCC 2 cut(s) 229, 415
NmuCI GTSAC 2 cut(s) 122, 1522
NsiI ATGCAT 3 cut(s) 566, 919, 1129
NspI RCATGY 1 cut(s) 1656
PagI TCATGA 1 cut(s) 1147
PciSI GCTCTTC 2 cut(s) 107, 1470
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PfeI GAWTC 3 cut(s) 48, 280, 530
PkrI GCNGC 6 cut(s) 489, 526, 1054, 1077, 1221, 1408
Ppu21I YACGTR 1 cut(s) 897
PshBI ATTAAT 1 cut(s) 702
PsiI TTATAA 1 cut(s) 1005
Psp124BI GAGCTC 2 cut(s) 455, 1482
PspN4I GGNNCC 2 cut(s) 229, 415
PspPI GGNCC 4 cut(s) 41, 286, 600, 1397
PstI CTGCAG 1 cut(s) 1057
PsuI RGATCY 2 cut(s) 227, 744
PvuII CAGCTG 1 cut(s) 1409
RsaI GTAC 5 cut(s) 294, 446, 1420, 1641, 1687
RsaNI GTAC 5 cut(s) 293, 445, 1419, 1640, 1686
RseI CAYNNNNRTG 1 cut(s) 1152
SacI GAGCTC 2 cut(s) 455, 1482
SapI GCTCTTC 2 cut(s) 107, 1470
SaqAI TTAA 9 cut(s) 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508
SatI GCNGC 6 cut(s) 488, 525, 1053, 1076, 1220, 1407
Sau3AI GATC 4 cut(s) 227, 744, 766, 1666
Sau96I GGNCC 4 cut(s) 41, 286, 600, 1397
ScaI AGTACT 2 cut(s) 1641, 1687
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 4 cut(s) 266, 416, 455, 1482
SfcI CTRYAG 2 cut(s) 52, 1053
SinI GGWCC 2 cut(s) 286, 1397
SmiMI CAYNNNNRTG 1 cut(s) 1152
Sse9I AATT 7 cut(s) 64, 152, 327, 481, 808, 1059, 1584
SsiI CCGC 1 cut(s) 524
SspI AATATT 1 cut(s) 957
SspMI CTAG 7 cut(s) 183, 491, 623, 740, 924, 1304, 1554
SstI GAGCTC 2 cut(s) 455, 1482
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 6 cut(s) 408, 1028, 1204, 1325, 1690, 1723
TaiI ACGT 4 cut(s) 148, 803, 899, 996
TaqI TCGA 4 cut(s) 108, 559, 690, 1464
TasI AATT 7 cut(s) 64, 152, 327, 481, 808, 1059, 1584
TatI WGTACW 5 cut(s) 292, 444, 1418, 1639, 1685
TauI GCSGC 1 cut(s) 527
TfiI GAWTC 3 cut(s) 48, 280, 530
Tru1I TTAA 9 cut(s) 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508
Tru9I TTAA 9 cut(s) 702, 710, 803, 845, 1320, 1331, 1358, 1437, 1508
TscAI CASTG 5 cut(s) 261, 274, 413, 577, 1209
TseFI GTSAC 2 cut(s) 122, 1522
TseI GCWGC 5 cut(s) 487, 1052, 1075, 1219, 1406
Tsp45I GTSAC 2 cut(s) 122, 1522
TspDTI ATGAA 6 cut(s) 25, 773, 1095, 1136, 1164, 1193
TspRI CASTG 5 cut(s) 261, 274, 413, 577, 1209
VpaK11BI GGWCC 2 cut(s) 286, 1397
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 4 cut(s) 152, 327, 1059, 1584
XbaI TCTAGA 1 cut(s) 1553
XceI RCATGY 1 cut(s) 1656
XmiI GTMKAC 1 cut(s) 899
XspI CTAG 7 cut(s) 183, 491, 623, 740, 924, 1304, 1554
ZrmI AGTACT 2 cut(s) 1641, 1687
Zsp2I ATGCAT 3 cut(s) 566, 919, 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.