MD06G1069200.v1.1

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009721
Physical Location & Seq
Reverse (-)
16612811 .. 16620829
8019 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1069200.v1.1.491

Sequence Viewer

Length: 444 bp
ATGCTAGCAGAACTGAGTTCGGGGGAAGCCGTGAAACTGTCGGTTACAACTACCAAGTACTTTTCGAAAACTAGGGCTCCTTCGAGGAGGAAGATTACACCACACTTCACGGCAACACACACACACACTCCTCCTGTACTCTTTTCACTCCTCTTCCCCCCCCCCTCCCCAACTCTCTCTCCTCAACTTCTTCATCTCCGTCTCTCTCTTAAAAGCTTGTTTGCAGAGGCTGATACGGATATGTCGTGTGATACTACGAAGGAAAATGCATCTGTAGTCGATTCATCTGTTACTGACTGGAAACAAGACATAGGCAATTCAGATGATCCAGAGAGTTCAAGTCACAAAGTTAATGAGGGGGTTGATCCACCTAAATCAGAAGAAGTAGAGCATTCTCGTGATCAGGTCGGGAATTCCACCTCACAAAAAAAGTACAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

148

Amino Acids

16.1

Weight (kDa)

6.04

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 320, 359
AcsI RAATTY 1 cut(s) 412
AfaI GTAC 3 cut(s) 59, 138, 434
AgsI TTSAA 1 cut(s) 339
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 320, 359
AlwNI CAGNNNCTG 1 cut(s) 230
ApoI RAATTY 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 65
AsuNHI GCTAGC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 79
BauI CACGAG 1 cut(s) 396
BceAI ACGGC 2 cut(s) 14, 126
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 5, 72
BfmI CTRYAG 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 278
BmtI GCTAGC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 65
BsaXI ACNNNNNCTCC 6 cut(s) 61, 91, 112, 142, 163, 193
Bse1I ACTGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 4 cut(s) 100, 120, 140, 171
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 325, 364, 400
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 320, 359
BspT104I TTCGAA 1 cut(s) 65
BsrI ACTGG 1 cut(s) 302
BssMI GATC 3 cut(s) 325, 364, 400
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 39, 437
Bst6I CTCTTC 1 cut(s) 158
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 14
BstKTI GATC 3 cut(s) 328, 367, 403
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 325, 364, 400
BstSFI CTRYAG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 230
Csp6I GTAC 3 cut(s) 58, 137, 433
CviAII CATG 1 cut(s) 441
CviJI RGCY 4 cut(s) 29, 77, 216, 230
CviKI_1 RGCY 4 cut(s) 29, 77, 216, 230
CviQI GTAC 3 cut(s) 58, 137, 433
DdeI CTNAG 1 cut(s) 14
DpnI GATC 3 cut(s) 327, 366, 402
DpnII GATC 3 cut(s) 325, 364, 400
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 412
EcoT22I ATGCAT 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 1 cut(s) 444
FaiI YATR 3 cut(s) 242, 311, 442
FatI CATG 1 cut(s) 440
FbaI TGATCA 1 cut(s) 400
FriOI GRGCYC 1 cut(s) 79
FspBI CTAG 2 cut(s) 5, 72
Hin1II CATG 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 322, 379
Hpy188III TCNNGA 3 cut(s) 329, 398, 409
HpyAV CCTTC 2 cut(s) 90, 253
HpyCH4III ACNGT 2 cut(s) 39, 437
HpyCH4V TGCA 3 cut(s) 224, 269, 440
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 444
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 325, 364, 400
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 4 cut(s) 147, 283, 342, 389
LweI GCATC 1 cut(s) 278
MaeI CTAG 2 cut(s) 5, 72
MaeIII GTNAC 3 cut(s) 43, 289, 341
MalI GATC 3 cut(s) 327, 366, 402
MboI GATC 3 cut(s) 325, 364, 400
MboII GAAGA 4 cut(s) 103, 145, 182, 392
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 316, 412
MnlI CCTC 9 cut(s) 78, 81, 141, 161, 175, 192, 220, 349, 430
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 2 cut(s) 210, 351
MslI CAYNNNNRTG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 391
NdeII GATC 3 cut(s) 325, 364, 400
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 444
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 271
NspV TTCGAA 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 230
RsaI GTAC 3 cut(s) 59, 138, 434
RsaNI GTAC 3 cut(s) 58, 137, 433
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 2 cut(s) 210, 351
Sau3AI GATC 3 cut(s) 325, 364, 400
ScaI AGTACT 1 cut(s) 59
SduI GDGCHC 1 cut(s) 79
SetI ASST 4 cut(s) 218, 373, 408, 422
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 2 cut(s) 316, 412
SspMI CTAG 2 cut(s) 5, 72
TaaI ACNGT 2 cut(s) 39, 437
TaqI TCGA 3 cut(s) 65, 83, 279
TasI AATT 2 cut(s) 316, 412
TatI WGTACW 3 cut(s) 57, 136, 432
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 210, 351
Tru9I TTAA 2 cut(s) 210, 351
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 182, 273
TspGWI ACGGA 2 cut(s) 188, 251
TspRI CASTG 1 cut(s) 442
XapI RAATTY 1 cut(s) 412
XspI CTAG 2 cut(s) 5, 72
ZrmI AGTACT 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.