Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Reverse (-)

22061571 .. 22064242

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGTGAAGCGCGGGCTCTACCGGAATCGAGCCATTGGATCTCATTCCTTAATGCGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGTTGAGAAGACAAGCTGGAATGGCACAAAGAAAGTTGACCATTAGAGCTATCAATGCTTTGATTGTTATGGGATTTGGGACCTTTGCGTTAATAGAGAAATTATCTACCAAATCACCTGATGGCCCTACCAAGATGAAAATTTTGGCTGCAATTGCAGAGGAACATAATGTCAAATGGGATCTCGAGGCATTTGAAGAGAAGCCTCCTGAGGACCTGCTGAACGGACCAAATACGTTTGGAATGGCCAGTATGGATTTTGCTCCACCTCCACCTACTCATGATGTCAGGGGACCTCCTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

9.81

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	5, 15
AclWI	GGATC	2 cut(s)	49, 318
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	67, 119, 326
AluBI	AGCT	3 cut(s)	115, 146, 179
AluI	AGCT	3 cut(s)	115, 146, 179
AlwI	GGATC	2 cut(s)	49, 318
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	253, 375
ApeKI	GCWGC	2 cut(s)	112, 278
ApoI	RAATTY	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	5 cut(s)	210, 254, 343, 356, 422
AsuHPI	GGTGA	2 cut(s)	19, 237
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	4 cut(s)	210, 343, 356, 422
AxyI	CCTNAGG	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	124, 265
BccI	CCATC	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	354
BisI	GCNGC	2 cut(s)	113, 279
BlsI	GCNGC	2 cut(s)	114, 280
Bme18I	GGWCC	4 cut(s)	210, 343, 356, 422
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	5 cut(s)	210, 254, 343, 356, 422
BmiI	GGNNCC	2 cut(s)	211, 423
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	130, 378
Bse21I	CCTNAGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	130, 378
BseXI	GCAGC	2 cut(s)	124, 265
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	255, 377
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	255, 377
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	41, 310
BspACI	CCGC	2 cut(s)	5, 15
BspANI	GGCC	2 cut(s)	255, 377
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	211, 423
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	49, 318
BsrI	ACTGG	2 cut(s)	130, 378
BssMI	GATC	2 cut(s)	41, 310
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	2 cut(s)	44, 313
BstMBI	GATC	2 cut(s)	41, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 185, 284
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	124, 265
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	2 cut(s)	41, 310
BstYI	RGATCY	2 cut(s)	41, 310
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	255, 377
BtgZI	GCGATG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	5 cut(s)	210, 254, 343, 356, 422
CviAII	CATG	3 cut(s)	89, 95, 410
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	43, 312
DpnII	GATC	2 cut(s)	41, 310
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	4 cut(s)	210, 343, 356, 422
Eco81I	CCTNAGG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	3 cut(s)	210, 343, 422
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	3 cut(s)	92, 98, 413
FaiI	YATR	6 cut(s)	90, 96, 200, 297, 383, 411
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	88, 94, 409
FauI	CCCGC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	113, 279
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	113, 279
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	113, 279
HaeIII	GGCC	2 cut(s)	255, 377
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	92, 98, 413
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	19, 237
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	314, 338, 410
Hpy8I	GTNNAC	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	2 cut(s)	281, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 185, 284
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	3 cut(s)	92, 98, 413
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	41, 310
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	8 cut(s)	38, 132, 143, 261, 351, 359, 391, 403
Lsp1109I	GCAGC	2 cut(s)	124, 265
LweI	GCATC	1 cut(s)	50
MaeII	ACGT	1 cut(s)	365
MalI	GATC	2 cut(s)	43, 312
MboI	GATC	2 cut(s)	41, 310
MboII	GAAGA	2 cut(s)	150, 338
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	41, 310
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	3 cut(s)	230, 270, 282
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	8 cut(s)	91, 102, 283, 310, 334, 345, 408, 435
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	53, 104, 221
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	152, 185, 284
NdeII	GATC	2 cut(s)	41, 310
NlaIII	CATG	3 cut(s)	92, 98, 413
NlaIV	GGNNCC	2 cut(s)	211, 423
PaeR7I	CTCGAG	1 cut(s)	314
PagI	TCATGA	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	114, 280
PpuMI	RGGWCCY	3 cut(s)	210, 343, 422
Psp5II	RGGWCCY	3 cut(s)	210, 343, 422
PspN4I	GGNNCC	2 cut(s)	211, 423
PspPI	GGNCC	5 cut(s)	210, 254, 343, 356, 422
PspPPI	RGGWCCY	3 cut(s)	210, 343, 422
PsuI	RGATCY	2 cut(s)	41, 310
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	53, 104, 221
SatI	GCNGC	2 cut(s)	113, 279
Sau3AI	GATC	2 cut(s)	41, 310
Sau96I	GGNCC	5 cut(s)	210, 254, 343, 356, 422
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	50
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	4 cut(s)	210, 343, 356, 422
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	230, 270, 282
SsiI	CCGC	2 cut(s)	5, 15
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	31, 315
TasI	AATT	3 cut(s)	230, 270, 282
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	3 cut(s)	53, 104, 221
Tru9I	TTAA	3 cut(s)	53, 104, 221
TseI	GCWGC	2 cut(s)	112, 278
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	369
VpaK11BI	GGWCC	4 cut(s)	210, 343, 356, 422
XapI	RAATTY	1 cut(s)	270
XhoI	CTCGAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.