MD16G1146000.v1.1

Probable protein Pop3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009721
Physical Location & Seq
Reverse (-)
11399809 .. 11400796
988 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1146000.v1.1.491

Sequence Viewer

Length: 147 bp
ATGGAGGAAGCAAAGGGAGGAGAGTTAAAGAATATTCTGATGGCAAAGTTCAAAGAAGGAACATCAGAGAGCCAGATCGAGCAGCTCATCGAATCTTTTGCCAACCTGGTCAACCTCGTTGAGCCCATGAAGTCCTTCCACTGCTGA

Protein Analysis

49

Amino Acids

5.4

Weight (kDa)

4.91

Isoelectric Point (pI)

65.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 10 - 48 5.5e-06 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 107
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 75
BssMI GATC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 107
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
CsiI ACCWGGT 1 cut(s) 105
CviAII CATG 1 cut(s) 127
CviJI RGCY 3 cut(s) 72, 85, 124
CviKI_1 RGCY 3 cut(s) 72, 85, 124
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 130
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 39, 67
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 50, 145
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 86, 92, 119
Lsp1109I GCAGC 1 cut(s) 94
MabI ACCWGGT 1 cut(s) 105
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 126
MnlI CCTC 2 cut(s) 11, 125
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 126
SetI ASST 3 cut(s) 87, 108, 117
SexAI ACCWGGT 1 cut(s) 105
SgeI CNNG 6 cut(s) 85, 91, 118, 119, 128, 139
SspI AATATT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 105
TaqI TCGA 2 cut(s) 78, 90
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 146
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.