Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Forward (+)

39685313 .. 39687405

Gene Structure 2093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGAGAGAGCCAGAAGCAGTTCCAGATGGGAACCATTGAGGCTTTGAGTTTGTCGGTGGTGTCGTCTATGTCAATTGTCATTTGCAACAAGGCACTTATTAGCACACTTGGTTTTACTTTTGGTGGTACTGTGAGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGTTAATAGAGAAATTATCTACCAAATCACCTGATGGCCCTACCAAGATGAAAATTTTGGCTGCAATTGCAGAGGAACATAATGTCAAATGGGATCCCGAGGCATTTGAAGAGAAGCCTCCTAAGGACCTGCTAAACGGACCAAATATGTTTGGAATGGCCAGTATGGATTCTGCTCCACCTCCACCTACTCATGATGTCAGGGGACCTCCTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

142

Amino Acids

15.67

Weight (kDa)

6.9

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	296, 309
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	261
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	145, 197, 317
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AlwI	GGATC	2 cut(s)	296, 309
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	244, 366
ApeKI	GCWGC	2 cut(s)	190, 269
ApoI	RAATTY	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	4 cut(s)	245, 334, 347, 413
AsuHPI	GGTGA	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	3 cut(s)	334, 347, 413
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	202, 256
BccI	CCATC	2 cut(s)	22, 236
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	2 cut(s)	191, 270
BlsI	GCNGC	2 cut(s)	192, 271
Bme18I	GGWCC	3 cut(s)	334, 347, 413
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	4 cut(s)	245, 334, 347, 413
BmiI	GGNNCC	3 cut(s)	34, 303, 414
BmsI	GCATC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	208, 369
Bse21I	CCTNAGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	208, 369
BseXI	GCAGC	2 cut(s)	202, 256
BshFI	GGCC	2 cut(s)	246, 368
BsiHKCI	CYCGRG	1 cut(s)	305
BsnI	GGCC	2 cut(s)	246, 368
BsoBI	CYCGRG	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	301
BspANI	GGCC	2 cut(s)	246, 368
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	34, 303, 414
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	296, 309
BsrI	ACTGG	2 cut(s)	208, 369
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	202, 256
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	246, 368
BveI	ACCTGC	1 cut(s)	345
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	4 cut(s)	245, 334, 347, 413
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	3 cut(s)	167, 173, 401
CviJI	RGCY	8 cut(s)	12, 44, 149, 193, 246, 269, 325, 368
CviKI_1	RGCY	8 cut(s)	12, 44, 149, 193, 246, 269, 325, 368
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco47I	GGWCC	3 cut(s)	334, 347, 413
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	334, 413
FaeI	CATG	3 cut(s)	170, 176, 404
FaiI	YATR	7 cut(s)	71, 168, 174, 288, 356, 374, 402
FatI	CATG	3 cut(s)	166, 172, 400
Fnu4HI	GCNGC	2 cut(s)	191, 270
Fsp4HI	GCNGC	2 cut(s)	191, 270
GluI	GCNGC	2 cut(s)	191, 270
HaeIII	GGCC	2 cut(s)	246, 368
Hin1II	CATG	3 cut(s)	170, 176, 404
HinfI	GANTC	1 cut(s)	377
HphI	GGTGA	1 cut(s)	228
Hpy188III	TCNNGA	3 cut(s)	25, 305, 401
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	87, 272, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	170, 176, 404
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	7 cut(s)	26, 38, 221, 252, 350, 382, 394
Lsp1109I	GCAGC	2 cut(s)	202, 256
LweI	GCATC	1 cut(s)	128
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	329
MfeI	CAATTG	2 cut(s)	75, 273
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	4 cut(s)	75, 221, 261, 273
MluNI	TGGCCA	1 cut(s)	368
MnlI	CCTC	8 cut(s)	34, 169, 180, 274, 301, 336, 399, 426
Mox20I	TGGCCA	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	2 cut(s)	182, 212
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	368
MunI	CAATTG	2 cut(s)	75, 273
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	170, 176, 404
NlaIV	GGNNCC	3 cut(s)	34, 303, 414
PagI	TCATGA	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	192, 271
PpuMI	RGGWCCY	2 cut(s)	334, 413
Psp5II	RGGWCCY	2 cut(s)	334, 413
PspN4I	GGNNCC	3 cut(s)	34, 303, 414
PspPI	GGNCC	4 cut(s)	245, 334, 347, 413
PspPPI	RGGWCCY	2 cut(s)	334, 413
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	182, 212
SatI	GCNGC	2 cut(s)	191, 270
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	4 cut(s)	245, 334, 347, 413
SetI	ASST	6 cut(s)	195, 241, 339, 391, 397, 418
SfaNI	GCATC	1 cut(s)	128
SinI	GGWCC	3 cut(s)	334, 347, 413
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	4 cut(s)	75, 221, 261, 273
TaaI	ACNGT	1 cut(s)	133
TasI	AATT	4 cut(s)	75, 221, 261, 273
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	182, 212
Tru9I	TTAA	2 cut(s)	182, 212
TseI	GCWGC	2 cut(s)	190, 269
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	360
VpaK11BI	GGWCC	3 cut(s)	334, 347, 413
XapI	RAATTY	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.