Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Reverse (-)

23933693 .. 23938962

Gene Structure 5270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028527

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATGATATTATTTGAAGGAGTGGATTCAGAGAAGACCACAAGACTTCCGCTTCTCATCGCTGCTCGCCGTCGACCTGCCACGGCATCGTTTCAGCTTCGTGTTGCATTATCGGTGTTTCTCGGCGTTGTCGGTGATAGCCGGAAGGAAGAAGGAGGGAGAGTGGGGGTTTTGGCTTTATGGGACTTGTACGACGGCGTTGTGAAACTGCGAAGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGAGTGCAAGTGCGTATGATTCTTTAGTTGGCGTGTTCTATTCCAAGCCTTTTGACACCAAGGTGGACTGGAGCTTTGTTGCCAAGGCTTCTCCCTGTTATGTGACTTATCTACAGGATGCAATCGATCAAATCATTAAGTTTTTTCGGAGTAATACAGTTAGTCAGAAGATACTATGGATACTGCAGCTGCTGTGTAGGTTCTTACTGAATGTTGATATAAAAAGCAAATCTGCATTGTTAGCTGAGTGTTTGGAGTATCATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N PH Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

9.3

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	17, 223, 275
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	5 cut(s)	97, 271, 360, 475, 530
AluI	AGCT	5 cut(s)	97, 271, 360, 475, 530
AlwNI	CAGNNNCTG	1 cut(s)	478
ApeKI	GCWGC	4 cut(s)	62, 268, 472, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AsuHPI	GGTGA	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	4 cut(s)	49, 280, 462, 484
BceAI	ACGGC	3 cut(s)	54, 99, 211
BciVI	GTATCC	1 cut(s)	459
BfmI	CTRYAG	2 cut(s)	398, 470
BfuAI	ACCTGC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	4 cut(s)	63, 269, 473, 476
BlsI	GCNGC	4 cut(s)	64, 270, 474, 477
BmsI	GCATC	3 cut(s)	95, 206, 394
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	81, 345, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse1I	ACTGG	1 cut(s)	359
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	3 cut(s)	81, 345, 369
BseGI	GGATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	4 cut(s)	49, 280, 462, 484
BshVI	ATCGAT	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	81, 345, 369
BssMI	GATC	1 cut(s)	412
BssT1I	CCWWGG	2 cut(s)	345, 369
Bst4CI	ACNGT	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstSFI	CTRYAG	2 cut(s)	398, 470
BstV1I	GCAGC	4 cut(s)	49, 280, 462, 484
BstV2I	GAAGAC	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	459
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	478
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	245, 251, 548
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	345, 369
EcoT14I	CCWWGG	2 cut(s)	345, 369
ErhI	CCWWGG	2 cut(s)	345, 369
FaeI	CATG	3 cut(s)	248, 254, 551
FaiI	YATR	8 cut(s)	181, 246, 252, 303, 387, 463, 506, 549
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	244, 250, 547
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	63, 269, 473, 476
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	63, 269, 473, 476
GluI	GCNGC	4 cut(s)	63, 269, 473, 476
GsuI	CTGGAG	1 cut(s)	376
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	3 cut(s)	248, 254, 551
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	26, 305
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	74, 352
Hpy188I	TCNGA	3 cut(s)	31, 435, 453
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	74, 352
Hpy99I	CGWCG	2 cut(s)	75, 197
HpyAV	CCTTC	3 cut(s)	11, 139, 146
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	5 cut(s)	107, 293, 407, 472, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	248, 254, 551
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	6 cut(s)	90, 155, 299, 340, 386, 394
Lsp1109I	GCAGC	4 cut(s)	49, 280, 462, 484
LweI	GCATC	3 cut(s)	95, 206, 394
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	4 cut(s)	46, 161, 225, 466
MnlI	CCTC	3 cut(s)	149, 247, 258
MseI	TTAA	2 cut(s)	260, 423
MslI	CAYNNNNRTG	2 cut(s)	249, 347
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	527
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	248, 254, 551
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	26, 305
PkrI	GCNGC	4 cut(s)	64, 270, 474, 477
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	249, 347
SalI	GTCGAC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	260, 423
SatI	GCNGC	4 cut(s)	63, 269, 473, 476
Sau3AI	GATC	1 cut(s)	412
SetI	ASST	8 cut(s)	79, 99, 273, 351, 362, 477, 488, 532
SfaNI	GCATC	3 cut(s)	95, 206, 394
SfcI	CTRYAG	2 cut(s)	398, 470
SmiMI	CAYNNNNRTG	2 cut(s)	249, 347
SsiI	CCGC	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	345, 369
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	73, 411
TfiI	GAWTC	2 cut(s)	26, 305
Tru1I	TTAA	2 cut(s)	260, 423
Tru9I	TTAA	2 cut(s)	260, 423
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	4 cut(s)	62, 268, 472, 475
Tsp45I	GTSAC	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.