Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Reverse (-)

18477930 .. 18489685

Gene Structure 11756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGACCATTAGCATTTATTCAAGAAAGCCGTTTCTTTTCATGTTGTTGAAAACTCTTGATGGAAAGCTTGGTTTACCATCCGACCTATTTATGTGTGCAGAATGGTCATATGGATCATTACATATATGGTGGATGGTGGTCGGTTTGGTGGACTGGTACATACGGTATGGTTCTAAACTAACACTGCTGCAAGAACAAGCCGCGATATCAACCCTGGTTGCCCGACCTATAGGAATAATCCCTACACCATGGAATAGTGCACTGGGTTACAATAACAAATCCGACCACAAGACTTCCGCTTCTCATTCTTGCTCGCCGTCGACCCTGCCACGGCTTCGTTTCGGCTTCGTGTCGCATTATCGGTGTTTCTCGGCGTTGTCGGTGATAGCTGGAAGGAAGAAGGAGGGAGAGTGGGGGTTTTGGCTTTATGGGACTTGTACGACGGCGTTGGTGATTGGTCTTTGTTTTGATCAACATTCGGCGTTTTGGCTCGCCGGAGAAGAGCTATTGGGGTATCGGAGGCTCTGTGGGAAAAGAGGTTTGTTGAGTGAAACCGAGAAGAAGCGGAACAAGCATTTGGTATTTTACATATATCAGCACCTTGATTGGTTGTTACACGGCACATTGAGTGAAGAGGCCTTCAAGGGGCTAGGGGACTTTTCAAAGGAGGAGTTGGACTCGGAGTCGAGAGAAATTTCAAATCCTCAATTCGACCTCCACACTTCACACCACTTCAAGCTGCTTGGAGGAATTGATGTACGTCTCACAAGCTTCAAAACCCCTCAAAAATTGGTGCCGGAGGTGGCCGGAATCGTGAGTTCGGACGGTGACCCCGAAGCAACGCTGCCACCCAATTCTCCACCTTGCTGTGCCTTCTACGGCCAAAATCAAGCAACAAAGCTACCACAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

34.2

Weight (kDa)

8.35

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	1 cut(s)	203
AciI	CCGC	3 cut(s)	201, 297, 565
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	2 cut(s)	804, 880
AcsI	RAATTY	1 cut(s)	693
AfaI	GTAC	3 cut(s)	158, 439, 759
AfiI	CCNNNNNNNGG	2 cut(s)	330, 645
AgsI	TTSAA	7 cut(s)	21, 49, 643, 663, 699, 736, 775
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	6 cut(s)	67, 389, 505, 739, 771, 901
AluI	AGCT	6 cut(s)	67, 389, 505, 739, 771, 901
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	767
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	3 cut(s)	636, 804, 880
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	3 cut(s)	187, 739, 844
ApoI	RAATTY	1 cut(s)	693
AsuHPI	GGTGA	3 cut(s)	394, 463, 839
BaeGI	GKGCMC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	793
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	174, 726, 831
BccI	CCATC	3 cut(s)	53, 85, 127
BceAI	ACGGC	6 cut(s)	13, 301, 347, 459, 634, 895
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	4 cut(s)	188, 201, 740, 845
BlsI	GCNGC	4 cut(s)	189, 202, 741, 846
Bme1390I	CCNGG	1 cut(s)	215
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BsaJI	CCNNGG	3 cut(s)	213, 248, 329
BsaXI	ACNNNNNCTCC	4 cut(s)	395, 425, 511, 541
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 645
Bse1I	ACTGG	2 cut(s)	158, 267
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	213, 248, 329
BseGI	GGATG	2 cut(s)	77, 138
BseLI	CCNNNNNNNGG	2 cut(s)	330, 645
BseNI	ACTGG	2 cut(s)	158, 267
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	174, 726, 831
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	638, 806, 882
BshNI	GGYRCC	1 cut(s)	793
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	495, 797, 807
BslFI	GGGAC	2 cut(s)	445, 668
BslI	CCNNNNNNNGG	2 cut(s)	330, 645
BsmAI	GTCTC	1 cut(s)	767
BsmBI	CGTCTC	1 cut(s)	767
BsmFI	GGGAC	2 cut(s)	445, 668
BsnI	GGCC	3 cut(s)	638, 806, 882
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	113, 469
Bsp19I	CCATGG	1 cut(s)	248
BspACI	CCGC	3 cut(s)	201, 297, 565
BspANI	GGCC	3 cut(s)	638, 806, 882
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	795
BspPI	GGATC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	158, 267
BssECI	CCNNGG	3 cut(s)	213, 248, 329
BssMI	GATC	2 cut(s)	113, 469
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	165, 827
Bst6I	CTCTTC	2 cut(s)	495, 627
BstC8I	GCNNGC	2 cut(s)	314, 492
BstDSI	CCRYGG	2 cut(s)	248, 329
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	2 cut(s)	77, 138
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	116, 472
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	2 cut(s)	113, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstNI	CCWGG	1 cut(s)	215
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	174, 726, 831
BsuRI	GGCC	3 cut(s)	638, 806, 882
BtgI	CCRYGG	2 cut(s)	248, 329
BtsCI	GGATG	2 cut(s)	77, 138
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	182, 260
Cac8I	GCNNGC	2 cut(s)	314, 492
Csp6I	GTAC	3 cut(s)	157, 438, 758
CviAII	CATG	2 cut(s)	40, 249
CviQI	GTAC	3 cut(s)	157, 438, 758
DpnI	GATC	2 cut(s)	115, 471
DpnII	GATC	2 cut(s)	113, 469
DriI	GACNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	2 cut(s)	804, 880
Eam1104I	CTCTTC	2 cut(s)	495, 627
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	2 cut(s)	495, 627
Eco130I	CCWWGG	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	638
Eco32I	GATATC	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	827
EcoO65I	GGTNACC	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
Esp3I	CGTCTC	1 cut(s)	767
FaeI	CATG	2 cut(s)	43, 252
FaqI	GGGAC	2 cut(s)	445, 668
FatI	CATG	2 cut(s)	39, 248
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	188, 201, 740, 845
FokI	GGATG	2 cut(s)	64, 145
Fsp4HI	GCNGC	4 cut(s)	188, 201, 740, 845
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	4 cut(s)	188, 201, 740, 845
HaeIII	GGCC	3 cut(s)	638, 806, 882
HapII	CCGG	3 cut(s)	495, 797, 807
Hin1II	CATG	2 cut(s)	43, 252
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	2 cut(s)	65, 769
HinfI	GANTC	3 cut(s)	677, 683, 810
HpaII	CCGG	3 cut(s)	495, 797, 807
HphI	GGTGA	3 cut(s)	394, 463, 839
Hpy166II	GTNNAC	4 cut(s)	74, 151, 260, 321
Hpy188I	TCNGA	5 cut(s)	82, 283, 519, 682, 823
Hpy188III	TCNNGA	4 cut(s)	21, 56, 687, 814
Hpy8I	GTNNAC	4 cut(s)	74, 151, 260, 321
Hpy99I	CGWCG	2 cut(s)	322, 445
HpyAV	CCTTC	4 cut(s)	387, 394, 649, 883
HpyCH4III	ACNGT	2 cut(s)	165, 827
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	3 cut(s)	98, 190, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	2 cut(s)	43, 252
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	113, 469
LguI	GCTCTTC	1 cut(s)	495
LpnPI	CCDG	9 cut(s)	139, 200, 227, 248, 338, 375, 508, 810, 820
Lsp1109I	GCAGC	3 cut(s)	174, 726, 831
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	3 cut(s)	266, 612, 827
MalI	GATC	2 cut(s)	115, 471
MboI	GATC	2 cut(s)	113, 469
MboII	GAAGA	4 cut(s)	409, 512, 571, 644
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	5 cut(s)	693, 707, 750, 788, 853
MlyI	GAGTC	2 cut(s)	671, 692
MmeI	TCCRAC	3 cut(s)	105, 306, 654
MspI	CCGG	3 cut(s)	495, 797, 807
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	571
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	2 cut(s)	113, 469
NlaIII	CATG	2 cut(s)	43, 252
NlaIV	GGNNCC	1 cut(s)	795
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	827
PceI	AGGCCT	1 cut(s)	638
PciSI	GCTCTTC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PfeI	GAWTC	1 cut(s)	810
PkrI	GCNGC	4 cut(s)	189, 202, 741, 846
PleI	GAGTC	2 cut(s)	671, 691
PpsI	GAGTC	2 cut(s)	671, 691
Psp6I	CCWGG	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	795
RsaI	GTAC	3 cut(s)	158, 439, 759
RsaNI	GTAC	3 cut(s)	157, 438, 758
SalI	GTCGAC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	495
SatI	GCNGC	4 cut(s)	188, 201, 740, 845
Sau3AI	GATC	2 cut(s)	113, 469
SchI	GAGTC	2 cut(s)	671, 692
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	228
Sse9I	AATT	5 cut(s)	693, 707, 750, 788, 853
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	3 cut(s)	201, 297, 565
SspMI	CTAG	1 cut(s)	650
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	165, 827
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	3 cut(s)	320, 686, 711
TasI	AATT	5 cut(s)	693, 707, 750, 788, 853
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	810
TscAI	CASTG	2 cut(s)	189, 267
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	3 cut(s)	187, 739, 844
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	189, 267
VneI	GTGCAC	1 cut(s)	258
XapI	RAATTY	1 cut(s)	693
XmiI	GTMKAC	1 cut(s)	320
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.