Rorug06G0120800

Vacuolar protein sorting-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009721
Physical Location & Seq
Reverse (-)
16615016 .. 16616154
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0120800.1

Sequence Viewer

Length: 162 bp
ATGTTTGCCGAGGCCCGGATGACGTGGAAGATTAATCAATTGGAGAAGGACAAAGATGTTGTTGCTCCAGCACAAGCAATTGCAATGCTTGAATCCTTACCTCAGCTTCCATTTTCTATTGTTAATGCTCTGCATTACTTTCTCATTGACTCCAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chorein_N PH Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

53

Amino Acids

6.03

Weight (kDa)

5.56

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 92
AjiI CACGTC 1 cut(s) 24
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 12
AseI ATTAAT 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 102
BcnI CCSGG 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 9, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 9, 153
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 116
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 15
BsnI GGCC 1 cut(s) 14
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 9, 153
BssT1I CCWWGG 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 14
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 13
CviJI RGCY 2 cut(s) 14, 106
CviKI_1 RGCY 2 cut(s) 14, 106
DdeI CTNAG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 1 cut(s) 160
FokI GGATG 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 16
HinfI GANTC 2 cut(s) 92, 149
HpaII CCGG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 83, 133
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 23
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 2 cut(s) 29, 81
MaeII ACGT 1 cut(s) 23
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 2 cut(s) 38, 78
MluCI AATT 2 cut(s) 38, 78
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 2 cut(s) 4, 111
MseI TTAA 2 cut(s) 33, 123
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 16
MunI CAATTG 2 cut(s) 38, 78
NciI CCSGG 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 34
PfeI GAWTC 1 cut(s) 92
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PshBI ATTAAT 1 cut(s) 33
PspPI GGNCC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 33, 123
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 16
SetI ASST 4 cut(s) 26, 103, 108, 159
SgeI CNNG 7 cut(s) 22, 27, 28, 36, 80, 86, 101
Sse9I AATT 2 cut(s) 38, 78
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 26
TasI AATT 2 cut(s) 38, 78
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 33, 123
Tru9I TTAA 2 cut(s) 33, 123
VspI ATTAAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.