Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Reverse (-)

50167459 .. 50172692

Gene Structure 5234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG370400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGAGATAGCCAGAAGCAGTTCCAGATGGGAACCATTGAGGCTTTGAGTTTGTCGATGGTGTCGTCTGTGTCAATTGTCATTTGCAACAAGGCACTTATTAGCACACTTGGTTTTACTTTTGGTGGCACTGTGAGATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGTTAATAAAGAAATTATCTACCAAATCACCTGATGGCCCTACCAAGATGAAAATTTTGGCTGCAATTGCAGAGGAACATAATGTCAAATGGGATCCCGAGGCATTTGAAGAGAAGCCACCTGAGGACCTGCTGAATGCAAGATCATCTCATCACTTGGATGATTCTGCTTCTACAAATGTTTCTGCCAACAAAGCAACCACATCTGCCAAATTTCATCTAGAAACGACATCTTCAGCTGTGAACCCAACTAGGTATGGAATCCATTATGTTAAAGACGACGATGGTAGTATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

168

Amino Acids

18.53

Weight (kDa)

7.06

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	296, 309
AcsI	RAATTY	2 cut(s)	261, 419
AcuI	CTGAAG	1 cut(s)	426
AgsI	TTSAA	3 cut(s)	145, 197, 317
AluBI	AGCT	2 cut(s)	193, 446
AluI	AGCT	2 cut(s)	193, 446
AlwI	GGATC	2 cut(s)	296, 309
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	190, 269
ApoI	RAATTY	2 cut(s)	261, 419
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	245, 334
AsuHPI	GGTGA	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	334
AxyI	CCTNAGG	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	202, 256
BccI	CCATC	4 cut(s)	22, 52, 236, 485
BfaI	CTAG	2 cut(s)	428, 459
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	2 cut(s)	191, 270
BlsI	GCNGC	2 cut(s)	192, 271
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	245, 334
BmiI	GGNNCC	2 cut(s)	34, 303
BmsI	GCATC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	208
Bse21I	CCTNAGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	202, 256
BshFI	GGCC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	301, 350
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	34, 303
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	296, 309
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	301, 350
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	304, 353
BstMBI	GATC	2 cut(s)	301, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 401
BstV1I	GCAGC	2 cut(s)	202, 256
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	245, 334
CviAII	CATG	2 cut(s)	167, 173
CviJI	RGCY	8 cut(s)	12, 44, 149, 193, 246, 269, 325, 446
CviKI_1	RGCY	8 cut(s)	12, 44, 149, 193, 246, 269, 325, 446
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	303, 352
DpnII	GATC	2 cut(s)	301, 350
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	426
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	334
FaeI	CATG	2 cut(s)	170, 176
FaiI	YATR	7 cut(s)	168, 174, 288, 465, 477, 500, 505
FatI	CATG	2 cut(s)	166, 172
Fnu4HI	GCNGC	2 cut(s)	191, 270
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	191, 270
FspBI	CTAG	2 cut(s)	428, 459
GluI	GCNGC	2 cut(s)	191, 270
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	170, 176
HinfI	GANTC	2 cut(s)	371, 468
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188III	TCNNGA	3 cut(s)	25, 305, 428
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	87, 272, 278, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 401
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	170, 176
Kzo9I	GATC	2 cut(s)	301, 350
LpnPI	CCDG	6 cut(s)	26, 38, 221, 252, 342, 350
Lsp1109I	GCAGC	2 cut(s)	202, 256
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	428, 459
MalI	GATC	2 cut(s)	303, 352
MboI	GATC	2 cut(s)	301, 350
MboII	GAAGA	2 cut(s)	329, 432
MfeI	CAATTG	2 cut(s)	75, 273
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	5 cut(s)	75, 221, 261, 273, 419
MnlI	CCTC	6 cut(s)	34, 169, 180, 274, 301, 325
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	3 cut(s)	182, 212, 480
MslI	CAYNNNNRTG	2 cut(s)	171, 366
MspA1I	CMGCKG	1 cut(s)	446
MunI	CAATTG	2 cut(s)	75, 273
Mva1269I	GAATGC	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	275, 401
NdeII	GATC	2 cut(s)	301, 350
NlaIII	CATG	2 cut(s)	170, 176
NlaIV	GGNNCC	2 cut(s)	34, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	371, 468
PkrI	GCNGC	2 cut(s)	192, 271
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	34, 303
PspPI	GGNCC	2 cut(s)	245, 334
PspPPI	RGGWCCY	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	446
RseI	CAYNNNNRTG	2 cut(s)	171, 366
SaqAI	TTAA	3 cut(s)	182, 212, 480
SatI	GCNGC	2 cut(s)	191, 270
Sau3AI	GATC	2 cut(s)	301, 350
Sau96I	GGNCC	2 cut(s)	245, 334
SetI	ASST	6 cut(s)	195, 241, 331, 339, 448, 464
SfaNI	GCATC	1 cut(s)	128
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	2 cut(s)	171, 366
Sse9I	AATT	5 cut(s)	75, 221, 261, 273, 419
SspMI	CTAG	2 cut(s)	428, 459
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	56
TasI	AATT	5 cut(s)	75, 221, 261, 273, 419
TfiI	GAWTC	2 cut(s)	371, 468
Tru1I	TTAA	3 cut(s)	182, 212, 480
Tru9I	TTAA	3 cut(s)	182, 212, 480
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	2 cut(s)	190, 269
TspDTI	ATGAA	2 cut(s)	272, 413
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	261, 419
XbaI	TCTAGA	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	428, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.