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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD06G1069200.v1.1 MD16G1146000.v1.1 |
| rosa_laevigata | RLG00000028527 |
| rosa_multiflora | Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630 |
| rosa_rugosa | Rorug06G0120800 |
| rosa_samantha | Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 150 |
| AccII | CGCG | 1 cut(s) | 386 |
| AciI | CCGC | 3 cut(s) | 127, 155, 384 |
| AfaI | GTAC | 1 cut(s) | 268 |
| AluBI | AGCT | 3 cut(s) | 14, 18, 335 |
| AluI | AGCT | 3 cut(s) | 14, 18, 335 |
| AoxI | GGCC | 1 cut(s) | 417 |
| AspS9I | GGNCC | 1 cut(s) | 417 |
| AsuC2I | CCSGG | 1 cut(s) | 325 |
| AsuHPI | GGTGA | 3 cut(s) | 223, 292, 313 |
| AsuNHI | GCTAGC | 1 cut(s) | 14 |
| BauI | CACGAG | 1 cut(s) | 354 |
| BccI | CCATC | 1 cut(s) | 90 |
| BceAI | ACGGC | 2 cut(s) | 176, 288 |
| BclI | TGATCA | 1 cut(s) | 298 |
| BcnI | CCSGG | 1 cut(s) | 325 |
| BfaI | CTAG | 2 cut(s) | 11, 15 |
| Bme1390I | CCNGG | 1 cut(s) | 325 |
| BmgT120I | GGNCC | 1 cut(s) | 417 |
| BmrFI | CCNGG | 1 cut(s) | 325 |
| BmsI | GCATC | 1 cut(s) | 16 |
| BmtI | GCTAGC | 1 cut(s) | 18 |
| BpuMI | CCSGG | 1 cut(s) | 325 |
| BsaJI | CCNNGG | 1 cut(s) | 158 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 224, 254 |
| BseDI | CCNNGG | 1 cut(s) | 158 |
| BseGI | GGATG | 1 cut(s) | 101 |
| Bsh1236I | CGCG | 1 cut(s) | 386 |
| BshFI | GGCC | 1 cut(s) | 419 |
| BsiSI | CCGG | 2 cut(s) | 219, 324 |
| BslFI | GGGAC | 1 cut(s) | 274 |
| BsmFI | GGGAC | 1 cut(s) | 274 |
| BsnI | GGCC | 1 cut(s) | 419 |
| Bsp143I | GATC | 1 cut(s) | 298 |
| BspACI | CCGC | 3 cut(s) | 127, 155, 384 |
| BspANI | GGCC | 1 cut(s) | 419 |
| BspFNI | CGCG | 1 cut(s) | 386 |
| BspHI | TCATGA | 1 cut(s) | 21 |
| BspOI | GCTAGC | 1 cut(s) | 18 |
| BspQI | GCTCTTC | 1 cut(s) | 325 |
| BssECI | CCNNGG | 1 cut(s) | 158 |
| BssMI | GATC | 1 cut(s) | 298 |
| BssSI | CACGAG | 1 cut(s) | 354 |
| Bst2BI | CACGAG | 1 cut(s) | 354 |
| Bst6I | CTCTTC | 2 cut(s) | 35, 325 |
| BstC8I | GCNNGC | 2 cut(s) | 16, 351 |
| BstDSI | CCRYGG | 1 cut(s) | 158 |
| BstF5I | GGATG | 1 cut(s) | 101 |
| BstFNI | CGCG | 1 cut(s) | 386 |
| BstKTI | GATC | 1 cut(s) | 301 |
| BstMBI | GATC | 1 cut(s) | 298 |
| BstSCI | CCNGG | 1 cut(s) | 323 |
| BstUI | CGCG | 1 cut(s) | 386 |
| BsuRI | GGCC | 1 cut(s) | 419 |
| BtgI | CCRYGG | 1 cut(s) | 158 |
| BtsCI | GGATG | 1 cut(s) | 101 |
| Cac8I | GCNNGC | 2 cut(s) | 16, 351 |
| CciI | TCATGA | 1 cut(s) | 21 |
| Cfr13I | GGNCC | 1 cut(s) | 417 |
| Csp6I | GTAC | 1 cut(s) | 267 |
| CviAII | CATG | 1 cut(s) | 22 |
| CviQI | GTAC | 1 cut(s) | 267 |
| DpnI | GATC | 1 cut(s) | 300 |
| DpnII | GATC | 1 cut(s) | 298 |
| Eam1104I | CTCTTC | 2 cut(s) | 35, 325 |
| EarI | CTCTTC | 2 cut(s) | 35, 325 |
| FaeI | CATG | 1 cut(s) | 25 |
| FaiI | YATR | 2 cut(s) | 23, 258 |
| FaqI | GGGAC | 1 cut(s) | 274 |
| FatI | CATG | 1 cut(s) | 21 |
| FauI | CCCGC | 1 cut(s) | 162 |
| FbaI | TGATCA | 1 cut(s) | 298 |
| FblI | GTMKAC | 1 cut(s) | 150 |
| FokI | GGATG | 1 cut(s) | 108 |
| FspBI | CTAG | 2 cut(s) | 11, 15 |
| HaeIII | GGCC | 1 cut(s) | 419 |
| HapII | CCGG | 2 cut(s) | 219, 324 |
| Hin1II | CATG | 1 cut(s) | 25 |
| HincII | GTYRAC | 1 cut(s) | 151 |
| HindII | GTYRAC | 1 cut(s) | 151 |
| HpaII | CCGG | 2 cut(s) | 219, 324 |
| HphI | GGTGA | 3 cut(s) | 223, 292, 313 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188III | TCNNGA | 1 cut(s) | 22 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| Hpy99I | CGWCG | 3 cut(s) | 142, 152, 274 |
| HpyAV | CCTTC | 5 cut(s) | 85, 216, 223, 416, 447 |
| Hsp92II | CATG | 1 cut(s) | 25 |
| Ksp22I | TGATCA | 1 cut(s) | 298 |
| Kzo9I | GATC | 1 cut(s) | 298 |
| LguI | GCTCTTC | 1 cut(s) | 325 |
| LmnI | GCTCC | 2 cut(s) | 4, 29 |
| LpnPI | CCDG | 3 cut(s) | 232, 335, 337 |
| LweI | GCATC | 1 cut(s) | 16 |
| MaeI | CTAG | 2 cut(s) | 11, 15 |
| MalI | GATC | 1 cut(s) | 300 |
| MboI | GATC | 1 cut(s) | 298 |
| MboII | GAAGA | 3 cut(s) | 52, 238, 342 |
| MluCI | AATT | 1 cut(s) | 469 |
| MmeI | TCCRAC | 1 cut(s) | 28 |
| MnlI | CCTC | 2 cut(s) | 226, 359 |
| MspI | CCGG | 2 cut(s) | 219, 324 |
| MspR9I | CCNGG | 1 cut(s) | 325 |
| MvnI | CGCG | 1 cut(s) | 386 |
| NciI | CCSGG | 1 cut(s) | 325 |
| NdeII | GATC | 1 cut(s) | 298 |
| NheI | GCTAGC | 1 cut(s) | 14 |
| NlaIII | CATG | 1 cut(s) | 25 |
| NmeAIII | GCCGAG | 2 cut(s) | 179, 421 |
| PagI | TCATGA | 1 cut(s) | 21 |
| PciSI | GCTCTTC | 1 cut(s) | 325 |
| PspPI | GGNCC | 1 cut(s) | 417 |
| RsaI | GTAC | 1 cut(s) | 268 |
| RsaNI | GTAC | 1 cut(s) | 267 |
| SalI | GTCGAC | 1 cut(s) | 149 |
| SapI | GCTCTTC | 1 cut(s) | 325 |
| Sau3AI | GATC | 1 cut(s) | 298 |
| Sau96I | GGNCC | 1 cut(s) | 417 |
| ScrFI | CCNGG | 1 cut(s) | 325 |
| SetI | ASST | 4 cut(s) | 16, 20, 337, 370 |
| SfaNI | GCATC | 1 cut(s) | 16 |
| Sse9I | AATT | 1 cut(s) | 469 |
| SsiI | CCGC | 3 cut(s) | 127, 155, 384 |
| SspMI | CTAG | 2 cut(s) | 11, 15 |
| StyD4I | CCNGG | 1 cut(s) | 323 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TasI | AATT | 1 cut(s) | 469 |
| TspDTI | ATGAA | 2 cut(s) | 10, 38 |
| TspGWI | ACGGA | 1 cut(s) | 136 |
| XmiI | GTMKAC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 11, 15 |