Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Reverse (-)

6842961 .. 6863186

Gene Structure 20226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGACGAGGTGCTGCCGGCGGTGTCACGTATAGCCGAGGTCGCCTCTTACAAACCACCGGCGGGGTTTCGCTCGGCGGACTTCGACACTTGGAAGAGAGATGGAGGAAGCAAAGGGAGTGGTGAAGCATGTATTGCTAGCCAAGTTCAAAGAAGGAGCCTCGAGTCTCGGATTGACCAACTCATCAAAGGCTATGCCAACCTCGTCAATCTCATTGATCCCATGGAGTCCTTCCATTGCGCAGCTAAAGCGTTGGAAAGGTACGATTTTGAGGTGTCAAACGGTGCGGTGCAACGGGTATTGATGCGGTTTAGCATTGATTGGGTCTCGGCGTTGGGGTTTTTCATTTGGGGAAAACGTCAAACAAAATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTGAAGAGGCAGCTTGAAACTTATTTCCGGAGTGCAAGTGCTTATTATTCTTTAGTTGGCGTGTTCTATTCCAAGCCTTTTGACACCAAGGTGGACTGCAGCTTTGTTGCTAAGGCTTCTCCCTGTTATGTGACTATCATTTTGAAAAAGAAGTTGGAACTGGATGAGAAGCTGTTGGATGCTCCACCCGACACACTAGGTGCTATTGCCTTAGCACTACACTTGCAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

214

Amino Acids

24.04

Weight (kDa)

8.89

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	241
AccIII	TCCGGA	1 cut(s)	438
AciI	CCGC	5 cut(s)	20, 62, 77, 287, 307
AclWI	GGATC	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	5 cut(s)	149, 376, 415, 428, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	4 cut(s)	245, 424, 513, 583
AluI	AGCT	4 cut(s)	245, 424, 513, 583
Alw26I	GTCTC	2 cut(s)	171, 331
AlwI	GGATC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	438
ApeKI	GCWGC	4 cut(s)	13, 242, 421, 510
ArsI	GACNNNNNNTTYG	4 cut(s)	497, 529, 535, 567
AspLEI	GCGC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	134
AsuNHI	GCTAGC	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	254, 433, 522
BccI	CCATC	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	171, 331
BfaI	CTAG	2 cut(s)	138, 608
BfmI	CTRYAG	1 cut(s)	508
BisI	GCNGC	4 cut(s)	14, 243, 422, 511
BlsI	GCNGC	4 cut(s)	15, 244, 423, 512
BmeT110I	CYCGRG	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	158
BmsI	GCATC	2 cut(s)	294, 580
BmtI	GCTAGC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu10I	CCTNAGC	2 cut(s)	522, 622
BsaAI	YACGTR	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	3 cut(s)	36, 222, 498
BsaWI	WCCGGW	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	2 cut(s)	16, 58
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	36, 222, 498
BseGI	GGATG	2 cut(s)	580, 595
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	576
BseXI	GCAGC	3 cut(s)	254, 433, 522
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	3 cut(s)	17, 59, 439
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	171, 331
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	5 cut(s)	20, 62, 77, 287, 307
BspEI	TCCGGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	512
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	2 cut(s)	16, 58
BsrI	ACTGG	1 cut(s)	576
BssAI	RCCGGY	2 cut(s)	16, 58
BssECI	CCNNGG	3 cut(s)	36, 222, 498
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	2 cut(s)	222, 498
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	89, 410
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	18, 139
BstDEI	CTNAG	2 cut(s)	522, 622
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	580, 595
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	171, 331
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 134, 248
BstNSI	RCATGY	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	508
BstV1I	GCAGC	3 cut(s)	254, 433, 522
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	580, 595
Cac8I	GCNNGC	2 cut(s)	18, 139
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	2 cut(s)	16, 58
Csp6I	GTAC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	4 cut(s)	129, 223, 398, 404
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	522, 622
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	611
Eam1104I	CTCTTC	2 cut(s)	89, 410
EarI	CTCTTC	2 cut(s)	89, 410
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	222, 498
Eco31I	GGTCTC	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	222, 498
ErhI	CCWWGG	2 cut(s)	222, 498
FaeI	CATG	4 cut(s)	132, 226, 401, 407
FaiI	YATR	8 cut(s)	32, 130, 195, 224, 399, 405, 540, 643
FatI	CATG	4 cut(s)	128, 222, 397, 403
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	14, 243, 422, 511
FokI	GGATG	2 cut(s)	587, 602
Fsp4HI	GCNGC	4 cut(s)	14, 243, 422, 511
FspBI	CTAG	2 cut(s)	138, 608
FspI	TGCGCA	1 cut(s)	241
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	4 cut(s)	14, 243, 422, 511
HapII	CCGG	3 cut(s)	17, 59, 439
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	132, 226, 401, 407
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	164, 227
HpaII	CCGG	3 cut(s)	17, 59, 439
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	2 cut(s)	147, 241
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	2 cut(s)	28, 358
HpyCH4V	TGCA	4 cut(s)	292, 446, 510, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 134, 248
HpyF3I	CTNAG	2 cut(s)	522, 622
HpySE526I	ACGT	2 cut(s)	28, 358
Hsp92II	CATG	4 cut(s)	132, 226, 401, 407
HspAI	GCGC	1 cut(s)	240
Kpn2I	TCCGGA	1 cut(s)	438
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	156, 598
LpnPI	CCDG	5 cut(s)	30, 72, 452, 547, 557
Lsp1109I	GCAGC	3 cut(s)	254, 433, 522
LweI	GCATC	2 cut(s)	294, 580
MaeI	CTAG	2 cut(s)	138, 608
MaeII	ACGT	2 cut(s)	28, 358
MaeIII	GTNAC	2 cut(s)	24, 541
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	106, 427
MlyI	GAGTC	2 cut(s)	173, 236
MmeI	TCCRAC	3 cut(s)	234, 546, 567
MnlI	CCTC	8 cut(s)	31, 55, 98, 170, 212, 265, 400, 411
MroI	TCCGGA	1 cut(s)	438
MroNI	GCCGGC	1 cut(s)	16
MslI	CAYNNNNRTG	2 cut(s)	402, 500
MspI	CCGG	3 cut(s)	17, 59, 439
MwoI	GCNNNNNNNGC	3 cut(s)	41, 134, 248
NaeI	GCCGGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	217
NgoMIV	GCCGGC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	132, 226, 401, 407
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	3 cut(s)	53, 61, 308
NmuCI	GTSAC	2 cut(s)	24, 541
NsbI	TGCGCA	1 cut(s)	241
NspI	RCATGY	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	15, 244, 423, 512
PleI	GAGTC	2 cut(s)	172, 235
PpsI	GAGTC	2 cut(s)	172, 235
Ppu21I	YACGTR	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	158
PspXI	VCTCGAGB	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	2 cut(s)	402, 500
SatI	GCNGC	4 cut(s)	14, 243, 422, 511
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	173, 236
SfaNI	GCATC	2 cut(s)	294, 580
SfcI	CTRYAG	1 cut(s)	508
Sfr274I	CTCGAG	1 cut(s)	161
SgrAI	CRCCGGYG	1 cut(s)	58
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	402, 500
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	5 cut(s)	20, 62, 77, 287, 307
SspMI	CTAG	2 cut(s)	138, 608
StyI	CCWWGG	2 cut(s)	222, 498
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	2 cut(s)	31, 361
TaqI	TCGA	2 cut(s)	84, 162
TseFI	GTSAC	2 cut(s)	24, 541
TseI	GCWGC	4 cut(s)	13, 242, 421, 510
Tsp45I	GTSAC	2 cut(s)	24, 541
TspDTI	ATGAA	1 cut(s)	334
XceI	RCATGY	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	161
XspI	CTAG	2 cut(s)	138, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.