Rmu_sc0003321.1_g000024

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003321.1
OG0009721
Physical Location & Seq
Forward (+)
90199 .. 92454
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003321.1_g000024.1.cds

Sequence Viewer

Length: 708 bp
atggttttcagatcccctcttcgattcgacctctacaccggaaattgcagcaagaggggttggggaaaacgttcaccagctcgaggagtccctgctgtccacttttggcggtcggaggaacttcacgtcgatttgagcttttccggccaaatcgttgcaaatcaagggcaccagcgtgaaggtgggaagcaggcgagtttgtggtggcttggaacacgccgggggatggccggacggcttcgaattgcagcgaggaagctgctgcccgaagaggaagggggagaacgcggggaagagagagagctggggaagaaggagggagagtgggggttttggctttatgggacttgtacgacagcgttggtgattggtctctgttttgatcaacattctggcgttttggctcgccggagaagagctattggggtattggaggctctgtgggaaaagagcaccttgattggttgttacactggcacattgagtgaagaggccttcaaggggctaggggacttttcaaaggaggagctggactcggagtcagagagtgaggtggttgagccggctaatgaagatttgaaattgtatctggaaaattttgaaaaggagctcaagaagcatactgaggaagctgcttctagagttgaggctgtattacaaagagctgaagagcaagggcaaatgattgtatgcacgcgctcggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

235

Amino Acids

26.49

Weight (kDa)

6.05

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccII CGCG 2 cut(s) 288, 697
AciI CCGC 2 cut(s) 109, 288
AclI AACGTT 1 cut(s) 70
AclWI GGATC 1 cut(s) 6
AcoI YGGCCR 2 cut(s) 145, 228
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 1 cut(s) 687
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 83, 226, 501
AgsI TTSAA 4 cut(s) 499, 519, 580, 602
AhdI GACNNNNNGTC 1 cut(s) 538
AjiI CACGTC 1 cut(s) 127
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 9 cut(s) 80, 138, 259, 304, 419, 529, 610, 632, 665
AluI AGCT 9 cut(s) 80, 138, 259, 304, 419, 529, 610, 632, 665
Alw21I GWGCWC 2 cut(s) 455, 612
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 6
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 3 cut(s) 145, 228, 492
ApeKI GCWGC 5 cut(s) 48, 248, 259, 262, 632
ApoI RAATTY 1 cut(s) 595
Asp700I GAANNNNTTC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 699
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 66, 376
AsuII TTCGAA 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 612
Bbv12I GWGCWC 2 cut(s) 455, 612
BbvI GCAGC 5 cut(s) 60, 246, 249, 260, 619
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 2 cut(s) 506, 639
BisI GCNGC 5 cut(s) 49, 249, 260, 263, 633
BlsI GCNGC 5 cut(s) 50, 250, 261, 264, 634
Bme1390I CCNGG 1 cut(s) 221
BmeRI GACNNNNNGTC 1 cut(s) 538
BmeT110I CYCGRG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 518, 550
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 226, 501
Bse118I RCCGGY 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 83, 226, 501
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 99, 539
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 5 cut(s) 60, 246, 249, 260, 619
BseYI CCCAGC 1 cut(s) 304
Bsh1236I CGCG 2 cut(s) 288, 697
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 147, 230, 494
BshNI GGYRCC 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 455, 612
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 6 cut(s) 39, 144, 220, 231, 409, 563
BslFI GGGAC 3 cut(s) 74, 358, 524
BslI CCNNNNNNNGG 3 cut(s) 83, 226, 501
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 3 cut(s) 74, 358, 524
BsnI GGCC 3 cut(s) 147, 230, 494
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 241
Bsp1286I GDGCHC 3 cut(s) 171, 455, 612
Bsp143I GATC 2 cut(s) 11, 382
BspACI CCGC 2 cut(s) 109, 288
BspANI GGCC 3 cut(s) 147, 230, 494
BspCNI CTCAG 1 cut(s) 616
BspFNI CGCG 2 cut(s) 288, 697
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 1 cut(s) 6
BspQI GCTCTTC 2 cut(s) 409, 663
BspT104I TTCGAA 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 562
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 11, 382
Bst6I CTCTTC 6 cut(s) 24, 264, 288, 409, 483, 663
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 4 cut(s) 192, 406, 564, 695
BstDEI CTNAG 1 cut(s) 624
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 2 cut(s) 288, 697
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 2 cut(s) 14, 385
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 11, 382
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 144, 616
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 2 cut(s) 288, 697
BstV1I GCAGC 5 cut(s) 60, 246, 249, 260, 619
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 3 cut(s) 147, 230, 494
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 4 cut(s) 192, 406, 564, 695
CfoI GCGC 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 562
Csp6I GTAC 1 cut(s) 351
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 1 cut(s) 624
DpnI GATC 2 cut(s) 13, 384
DpnII GATC 2 cut(s) 11, 382
DriI GACNNNNNGTC 1 cut(s) 538
EaeI YGGCCR 2 cut(s) 145, 228
Eam1104I CTCTTC 6 cut(s) 24, 264, 288, 409, 483, 663
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 6 cut(s) 24, 264, 288, 409, 483, 663
Ecl136II GAGCTC 1 cut(s) 610
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 610
EcoT38I GRGCYC 1 cut(s) 612
FaiI YATR 3 cut(s) 342, 621, 691
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 3 cut(s) 74, 358, 524
FauI CCCGC 1 cut(s) 281
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 5 cut(s) 49, 249, 260, 263, 633
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 5 cut(s) 49, 249, 260, 263, 633
FspBI CTAG 2 cut(s) 506, 639
GlaI GCGC 1 cut(s) 698
GluI GCNGC 5 cut(s) 49, 249, 260, 263, 633
GsaI CCCAGC 1 cut(s) 308
HaeIII GGCC 3 cut(s) 147, 230, 494
HapII CCGG 6 cut(s) 39, 144, 220, 231, 409, 563
HhaI GCGC 1 cut(s) 699
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HinfI GANTC 4 cut(s) 24, 87, 533, 539
HpaII CCGG 6 cut(s) 39, 144, 220, 231, 409, 563
HphI GGTGA 2 cut(s) 66, 376
Hpy166II GTNNAC 2 cut(s) 74, 100
Hpy188I TCNGA 4 cut(s) 11, 115, 538, 544
Hpy188III TCNNGA 3 cut(s) 590, 613, 639
Hpy8I GTNNAC 2 cut(s) 74, 100
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 173, 269, 307, 505
HpyCH4IV ACGT 2 cut(s) 70, 126
HpyCH4V TGCA 4 cut(s) 48, 158, 248, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 616
HpyF3I CTNAG 1 cut(s) 624
HpySE526I ACGT 2 cut(s) 70, 126
HspAI GCGC 1 cut(s) 697
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 2 cut(s) 11, 382
LguI GCTCTTC 2 cut(s) 409, 663
LmnI GCTCC 2 cut(s) 526, 607
Lsp1109I GCAGC 5 cut(s) 60, 246, 249, 260, 619
MaeI CTAG 2 cut(s) 506, 639
MaeII ACGT 2 cut(s) 70, 126
MaeIII GTNAC 1 cut(s) 467
MalI GATC 2 cut(s) 13, 384
MboI GATC 2 cut(s) 11, 382
MboII GAAGA 8 cut(s) 11, 281, 305, 322, 426, 500, 584, 680
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 3 cut(s) 171, 455, 612
MluCI AATT 4 cut(s) 43, 243, 581, 595
MlyI GAGTC 3 cut(s) 96, 527, 548
MmeI TCCRAC 1 cut(s) 93
MroNI GCCGGC 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 1 cut(s) 706
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 6 cut(s) 39, 144, 220, 231, 409, 563
MspR9I CCNGG 1 cut(s) 221
MvnI CGCG 2 cut(s) 288, 697
MwoI GCNNNNNNNGC 2 cut(s) 144, 616
NaeI GCCGGC 1 cut(s) 564
NciI CCSGG 1 cut(s) 221
NdeII GATC 2 cut(s) 11, 382
NgoMIV GCCGGC 1 cut(s) 562
NlaIV GGNNCC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 174
PaeR7I CTCGAG 1 cut(s) 81
PceI AGGCCT 1 cut(s) 494
PciSI GCTCTTC 2 cut(s) 409, 663
PdiI GCCGGC 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 5 cut(s) 50, 250, 261, 264, 634
PleI GAGTC 3 cut(s) 95, 527, 547
PpsI GAGTC 3 cut(s) 95, 527, 547
Psp124BI GAGCTC 1 cut(s) 612
Psp1406I AACGTT 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 170
PspXI VCTCGAGB 1 cut(s) 81
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 612
SapI GCTCTTC 2 cut(s) 409, 663
SaqAI TTAA 1 cut(s) 706
SatI GCNGC 5 cut(s) 49, 249, 260, 263, 633
Sau3AI GATC 2 cut(s) 11, 382
SchI GAGTC 3 cut(s) 96, 527, 548
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 3 cut(s) 171, 455, 612
Sfr274I CTCGAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 81, 611
SmoI CTYRAG 2 cut(s) 81, 611
Sse9I AATT 4 cut(s) 43, 243, 581, 595
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 2 cut(s) 109, 288
SspMI CTAG 2 cut(s) 506, 639
SstI GAGCTC 1 cut(s) 612
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 219
TaiI ACGT 2 cut(s) 73, 129
TaqI TCGA 5 cut(s) 22, 27, 82, 129, 241
TasI AATT 4 cut(s) 43, 243, 581, 595
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 706
Tru9I TTAA 1 cut(s) 706
TscAI CASTG 1 cut(s) 478
TseI GCWGC 5 cut(s) 48, 248, 259, 262, 632
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 1 cut(s) 478
XapI RAATTY 1 cut(s) 595
XbaI TCTAGA 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 2 cut(s) 506, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.