Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009721

Physical Location & Seq

Genomic Coordinates Reverse (-)

47712970 .. 47732535

Gene Structure 19566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG350900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 682 bp

ATGGCGTTGGTGATTGGTCTTTGTTTTGATCAACATGCTGGCGTTTTGGCTCGCCGGAGAAGAGCTATTGGGGTATCAGAGGCTCTGTGGGAAAAGAGAAGCGGAACAAGCATTTGGTATTTTACATATATCAGCACCTTGATTGGTTGTTACACTGGCACATTGAGTGAAGAGGCCTTCAAGGGGCTATGGGACTTTTCAAAGGAGGAGCTGGACTCGGAGTCAGAGAGTGAGGTGGTTGAGCCGACTAATGAAGATTTGAAATTGTATCTGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGTTGAGAAGACAAGCTGGAATGGCACAAAGGGGAAATGAAAACCAGACTAGCAGGCAAGGTGACGATGGCAATAAGCTATTGTGGCTGGACAGGGTGACCGGAAGGGTTTGCACATCGATTTCTGCAAAGGCCATGGCTATAACAGGGATTGAGGATCGGCGATACTGGAACTGGATTGCTGCTGAAGAATCAAGGAGTCAAAAGTGGTATGAACCAGAATGGTGGAAGTTTGGTGATGAAAAATCATATTTTCGCCATGCTTCAGGTGAGATGTATGTCATTTCTCAAGGGCTTGATGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTTCTCTTGGACAGGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

227

Amino Acids

26.34

Weight (kDa)

6.02

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	148 - 181	5.3e-06	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009721)

Species	Orthologous Gene IDs
malus_domestica	MD06G1069200.v1.1 MD16G1146000.v1.1
rosa_laevigata	RLG00000028527
rosa_multiflora	Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004
rosa_roxburghii	Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630
rosa_rugosa	Rorug06G0120800
rosa_samantha	Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	498
AcuI	CTGAAG	2 cut(s)	540, 582
AcyI	GRCGYC	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	4 cut(s)	181, 201, 262, 323
AhdI	GACNNNNNGTC	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	5 cut(s)	65, 211, 319, 350, 412
AluI	AGCT	5 cut(s)	65, 211, 319, 350, 412
AlwI	GGATC	1 cut(s)	498
AoxI	GGCC	2 cut(s)	174, 465
ApeKI	GCWGC	3 cut(s)	316, 515, 663
AsuHPI	GGTGA	5 cut(s)	22, 407, 442, 581, 614
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	328, 502, 650
BccI	CCATC	1 cut(s)	395
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	3 cut(s)	317, 516, 664
BlsI	GCNGC	3 cut(s)	318, 517, 665
BmeRI	GACNNNNNGTC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	4 cut(s)	160, 334, 506, 512
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseNI	ACTGG	4 cut(s)	160, 334, 506, 512
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	328, 502, 650
BshFI	GGCC	2 cut(s)	176, 467
BshVI	ATCGAT	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	55, 435
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	176, 467
Bsp143I	GATC	2 cut(s)	28, 490
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	176, 467
BspDI	ATCGAT	1 cut(s)	452
BspPI	GGATC	1 cut(s)	498
BspQI	GCTCTTC	1 cut(s)	55
BsrI	ACTGG	4 cut(s)	160, 334, 506, 512
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	28, 490
BssNI	GRCGYC	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	55, 165
BstACI	GRCGYC	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	40, 52, 389
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	430
BstKTI	GATC	2 cut(s)	31, 493
BstMBI	GATC	2 cut(s)	28, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 356, 418
BstNSI	RCATGY	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	430
BstV1I	GCAGC	3 cut(s)	328, 502, 650
BstV2I	GAAGAC	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	558
Bsu15I	ATCGAT	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	176, 467
BsuTUI	ATCGAT	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	40, 52, 389
ClaI	ATCGAT	1 cut(s)	452
CseI	GACGC	1 cut(s)	659
CviAII	CATG	5 cut(s)	35, 293, 299, 469, 593
DpnI	GATC	2 cut(s)	30, 492
DpnII	GATC	2 cut(s)	28, 490
DriI	GACNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	55, 165
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	2 cut(s)	55, 165
Eco130I	CCWWGG	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	540, 582
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	5 cut(s)	38, 296, 302, 472, 596
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	5 cut(s)	34, 292, 298, 468, 592
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	317, 516, 664
Fsp4HI	GCNGC	3 cut(s)	317, 516, 664
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	3 cut(s)	317, 516, 664
HaeIII	GGCC	2 cut(s)	176, 467
HapII	CCGG	2 cut(s)	55, 435
HgaI	GACGC	1 cut(s)	659
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	5 cut(s)	38, 296, 302, 472, 596
HinfI	GANTC	4 cut(s)	215, 221, 524, 532
HpaII	CCGG	2 cut(s)	55, 435
HphI	GGTGA	5 cut(s)	22, 407, 442, 581, 614
Hpy188I	TCNGA	3 cut(s)	79, 220, 226
HpyAV	CCTTC	2 cut(s)	187, 432
HpyCH4V	TGCA	2 cut(s)	447, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 356, 418
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	5 cut(s)	38, 296, 302, 472, 596
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	28, 490
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	3 cut(s)	328, 502, 650
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	3 cut(s)	149, 395, 430
MalI	GATC	2 cut(s)	30, 492
MboI	GATC	2 cut(s)	28, 490
MboII	GAAGA	5 cut(s)	72, 182, 266, 354, 533
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	3 cut(s)	209, 230, 541
MnlI	CCTC	7 cut(s)	73, 166, 199, 226, 295, 306, 481
MseI	TTAA	3 cut(s)	308, 636, 645
MslI	CAYNNNNRTG	2 cut(s)	297, 645
MspI	CCGG	2 cut(s)	55, 435
MwoI	GCNNNNNNNGC	3 cut(s)	108, 356, 418
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	28, 490
NlaIII	CATG	5 cut(s)	38, 296, 302, 472, 596
NmuCI	GTSAC	2 cut(s)	395, 430
NspI	RCATGY	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	318, 517, 665
PleI	GAGTC	3 cut(s)	209, 229, 540
PpsI	GAGTC	3 cut(s)	209, 229, 540
PspEI	GGTNACC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	297, 645
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	308, 636, 645
SatI	GCNGC	3 cut(s)	317, 516, 664
Sau3AI	GATC	2 cut(s)	28, 490
SchI	GAGTC	3 cut(s)	209, 230, 541
SetI	ASST	9 cut(s)	67, 140, 213, 237, 321, 352, 397, 414, 604
SmiMI	CAYNNNNRTG	2 cut(s)	297, 645
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	1 cut(s)	263
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	468
TaqI	TCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	3 cut(s)	308, 636, 645
Tru9I	TTAA	3 cut(s)	308, 636, 645
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	395, 430
TseI	GCWGC	3 cut(s)	316, 515, 663
Tsp45I	GTSAC	2 cut(s)	395, 430
TspDTI	ATGAA	4 cut(s)	267, 387, 561, 588
TspRI	CASTG	1 cut(s)	160
XceI	RCATGY	1 cut(s)	38
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.