No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD06G1069200.v1.1 MD16G1146000.v1.1 |
| rosa_laevigata | RLG00000028527 |
| rosa_multiflora | Rmu_sc0000144.1_g000056 Rmu_sc0003321.1_g000024 Rmu_sc0003477.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00014870 Rroxscaffold_2G00077870 Rroxscaffold_2G00136480 Rroxscaffold_5G00338630 |
| rosa_rugosa | Rorug06G0120800 |
| rosa_samantha | Rh2BG350900 Rh4DG054200 Rh4DG137300 Rh5AG418200 Rh5DG415400 Rh6AG242000 Rh6CG163000 Rh6DG154700 Rh7AG486300 Rh7DG327500 Rh7DG370400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 145 |
| AciI | CCGC | 1 cut(s) | 192 |
| AcoI | YGGCCR | 1 cut(s) | 232 |
| AcsI | RAATTY | 2 cut(s) | 34, 46 |
| AcyI | GRCGYC | 1 cut(s) | 146 |
| AgsI | TTSAA | 3 cut(s) | 51, 127, 188 |
| AjiI | CACGTC | 1 cut(s) | 90 |
| Ama87I | CYCGRG | 1 cut(s) | 40 |
| AoxI | GGCC | 1 cut(s) | 232 |
| ApeKI | GCWGC | 1 cut(s) | 11 |
| ApoI | RAATTY | 2 cut(s) | 34, 46 |
| AspLEI | GCGC | 1 cut(s) | 148 |
| AvaI | CYCGRG | 1 cut(s) | 40 |
| BanI | GGYRCC | 1 cut(s) | 145 |
| BceAI | ACGGC | 1 cut(s) | 247 |
| BfoI | RGCGCY | 1 cut(s) | 149 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| BmeT110I | CYCGRG | 1 cut(s) | 40 |
| BmgBI | CACGTC | 1 cut(s) | 90 |
| BmiI | GGNNCC | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 1 cut(s) | 120 |
| Bsa29I | ATCGAT | 1 cut(s) | 58 |
| BsaBI | GATNNNNATC | 1 cut(s) | 111 |
| BsaHI | GRCGYC | 1 cut(s) | 146 |
| Bse8I | GATNNNNATC | 1 cut(s) | 111 |
| BseCI | ATCGAT | 1 cut(s) | 58 |
| BseJI | GATNNNNATC | 1 cut(s) | 111 |
| Bsh1285I | CGRYCG | 1 cut(s) | 178 |
| BshFI | GGCC | 1 cut(s) | 234 |
| BshNI | GGYRCC | 1 cut(s) | 145 |
| BshVI | ATCGAT | 1 cut(s) | 58 |
| BsiEI | CGRYCG | 1 cut(s) | 178 |
| BsiHKCI | CYCGRG | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 234 |
| BsoBI | CYCGRG | 1 cut(s) | 40 |
| BspACI | CCGC | 1 cut(s) | 192 |
| BspANI | GGCC | 1 cut(s) | 234 |
| BspDI | ATCGAT | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 147 |
| BspT107I | GGYRCC | 1 cut(s) | 145 |
| BssNI | GRCGYC | 1 cut(s) | 146 |
| Bst4CI | ACNGT | 1 cut(s) | 179 |
| BstACI | GRCGYC | 1 cut(s) | 146 |
| BstH2I | RGCGCY | 1 cut(s) | 149 |
| BstHHI | GCGC | 1 cut(s) | 148 |
| BstMCI | CGRYCG | 1 cut(s) | 178 |
| Bsu15I | ATCGAT | 1 cut(s) | 58 |
| BsuRI | GGCC | 1 cut(s) | 234 |
| BsuTUI | ATCGAT | 1 cut(s) | 58 |
| BtrI | CACGTC | 1 cut(s) | 90 |
| CfoI | GCGC | 1 cut(s) | 148 |
| ClaI | ATCGAT | 1 cut(s) | 58 |
| CviJI | RGCY | 1 cut(s) | 234 |
| CviKI_1 | RGCY | 1 cut(s) | 234 |
| DinI | GGCGCC | 1 cut(s) | 147 |
| DraI | TTTAAA | 1 cut(s) | 78 |
| EaeI | YGGCCR | 1 cut(s) | 232 |
| Eco88I | CYCGRG | 1 cut(s) | 40 |
| EgeI | GGCGCC | 1 cut(s) | 147 |
| EheI | GGCGCC | 1 cut(s) | 147 |
| FaiI | YATR | 2 cut(s) | 110, 196 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| GlaI | GCGC | 1 cut(s) | 147 |
| GluI | GCNGC | 1 cut(s) | 12 |
| HaeII | RGCGCY | 1 cut(s) | 149 |
| HaeIII | GGCC | 1 cut(s) | 234 |
| HhaI | GCGC | 1 cut(s) | 148 |
| Hin1I | GRCGYC | 1 cut(s) | 146 |
| Hin6I | GCGC | 1 cut(s) | 146 |
| HinP1I | GCGC | 1 cut(s) | 146 |
| HinfI | GANTC | 2 cut(s) | 60, 162 |
| Hpy166II | GTNNAC | 1 cut(s) | 182 |
| Hpy188I | TCNGA | 1 cut(s) | 161 |
| Hpy188III | TCNNGA | 4 cut(s) | 40, 42, 137, 166 |
| Hpy8I | GTNNAC | 1 cut(s) | 182 |
| Hpy99I | CGWCG | 1 cut(s) | 94 |
| HpyAV | CCTTC | 2 cut(s) | 145, 235 |
| HpyCH4III | ACNGT | 1 cut(s) | 179 |
| HpyCH4IV | ACGT | 1 cut(s) | 89 |
| HpyCH4V | TGCA | 1 cut(s) | 14 |
| HpySE526I | ACGT | 1 cut(s) | 89 |
| Hsp92I | GRCGYC | 1 cut(s) | 146 |
| HspAI | GCGC | 1 cut(s) | 146 |
| KasI | GGCGCC | 1 cut(s) | 145 |
| LmnI | GCTCC | 1 cut(s) | 227 |
| MaeII | ACGT | 1 cut(s) | 89 |
| MluCI | AATT | 4 cut(s) | 34, 46, 79, 140 |
| Mly113I | GGCGCC | 1 cut(s) | 146 |
| MmeI | TCCRAC | 1 cut(s) | 139 |
| MnlI | CCTC | 4 cut(s) | 19, 77, 92, 142 |
| MseI | TTAA | 1 cut(s) | 77 |
| NarI | GGCGCC | 1 cut(s) | 146 |
| NlaIV | GGNNCC | 1 cut(s) | 147 |
| PaeR7I | CTCGAG | 1 cut(s) | 40 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 171 |
| PfeI | GAWTC | 2 cut(s) | 60, 162 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PluTI | GGCGCC | 1 cut(s) | 149 |
| PspN4I | GGNNCC | 1 cut(s) | 147 |
| SaqAI | TTAA | 1 cut(s) | 77 |
| SatI | GCNGC | 1 cut(s) | 12 |
| SetI | ASST | 5 cut(s) | 69, 92, 134, 156, 217 |
| SfoI | GGCGCC | 1 cut(s) | 147 |
| Sfr274I | CTCGAG | 1 cut(s) | 40 |
| SlaI | CTCGAG | 1 cut(s) | 40 |
| SmlI | CTYRAG | 2 cut(s) | 40, 135 |
| SmoI | CTYRAG | 2 cut(s) | 40, 135 |
| Sse9I | AATT | 4 cut(s) | 34, 46, 79, 140 |
| SsiI | CCGC | 1 cut(s) | 192 |
| SspDI | GGCGCC | 1 cut(s) | 145 |
| TaaI | ACNGT | 1 cut(s) | 179 |
| TaiI | ACGT | 1 cut(s) | 92 |
| TaqI | TCGA | 4 cut(s) | 41, 58, 63, 174 |
| TasI | AATT | 4 cut(s) | 34, 46, 79, 140 |
| TfiI | GAWTC | 2 cut(s) | 60, 162 |
| Tru1I | TTAA | 1 cut(s) | 77 |
| Tru9I | TTAA | 1 cut(s) | 77 |
| TseI | GCWGC | 1 cut(s) | 11 |
| XapI | RAATTY | 2 cut(s) | 34, 46 |
| XhoI | CTCGAG | 1 cut(s) | 40 |