Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Forward (+)

26295540 .. 26300096

Gene Structure 4557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1121600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGAACCACCACCAAAAAGCTACCAATGGTTTCTCCAAACCAACCGATTACAGTACAGCCGGAAGGGTCATCACCTGCAAAGCTGCTGTTGTATGGGTTCCAGGAGAACCTTTTGTCATGGAACAAGTTCAAGTCGATCCACCTCAAAAATTGGAAGTTCGAATCAAGATCCTCTTCACCTCAATCTGCCATACTGATCTTAGTGCTTGGTTAGGAGAGAATGAAGCACAACGAGCCTTTCCTCGAATATTAGGCCATGAAGCTTCCGGAATTGTTGAGAGTGTGGGTGAAGGTGTGATGGACATAAAAGAAGGGGACCATGTGGTACCAATTTTCAACGGAGAGTGTGGCGAGTGCAAGTGTTGCAAGTCTGAGAAAACCAATATTTGCAGCAACTCTGGAGTGAACGGATTTAAGAAGGTGATGACTAACGATGGAAAAAGTAGGTTTTCGACCAAAGATGGAAAAGCAATTTACCATTTTCTCAACACTTCAACTTTCAGTGAGTATACAGTGCTTGAATCTGCTTGTGTTGTGAAGATCGACCCTGAGGCTCCTATGAAGAAGATGACCTTGCTAAGTTGTGGTGTTTCAACTGGAGTCGGTGCTGCATGGAATACTGCTAATGTGCAACCTGCCTCAACTGTCGCCATTTTCGGTTTAGGATCCGTGGGACTTGCTGTCGCTGAAGGAGCAAGAGCCAGAGGAGCATCTAAAATTATTGGTGTTGACATTAACCCCGATAAATCCATCAAAGGTCAAGAAATGGGAGTCACAAATTTCATAAACCCAACCGAACCTGGAAAGCCAGTGCATGAGAGGATAAGAGAAATTACAGATGGAGGGGTGGACTATAGCTTTGAGTGTGTAGGTAACTTGGATGTTCTTCGGGAGGCCTTTCTGTCCACACATGAGGGTTGGGGGTTTACTGTGATACTGGGAATTCATGCAGCCCCAACAACGCTCCCTTTCCATCCAATGGAGTTGTTTAATGGTCGAGGAATTATTGGGTCTGTGTTTGGAGGCTTCAAAGGGAAGTCCCAACTCCCTCATTTCGCTAAACAGTGCATGCGTGGGGTTGTAGGTTTGGACAAGTTCATAACGCATGAGCTTCCATTTGAGAAGATAAACGATGCATTTCAGTTGCTCATTGAAGGCAAGTCATTGAGATGCGTTTTGCAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

397

Amino Acids

42.83

Weight (kDa)

6.47

Isoelectric Point (pI)

21.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	53 - 182	3.9e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	225 - 343	5.2e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	2 cut(s)	86, 646
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	982
AccI	GTMKAC	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	269
AclWI	GGATC	4 cut(s)	134, 166, 663, 676
AcsI	RAATTY	2 cut(s)	781, 945
AcuI	CTGAAG	1 cut(s)	711
AfaI	GTAC	2 cut(s)	58, 330
AfiI	CCNNNNNNNGG	1 cut(s)	982
AgsI	TTSAA	7 cut(s)	134, 340, 498, 524, 597, 1033, 1157
AhdI	GACNNNNNGTC	1 cut(s)	683
AjnI	CCWGG	2 cut(s)	103, 802
AluBI	AGCT	5 cut(s)	23, 86, 266, 861, 1114
AluI	AGCT	5 cut(s)	23, 86, 266, 861, 1114
AlwI	GGATC	4 cut(s)	134, 166, 663, 676
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	2 cut(s)	256, 897
ApeKI	GCWGC	4 cut(s)	86, 393, 611, 953
ApoI	RAATTY	2 cut(s)	781, 945
ArsI	GACNNNNNNTTYG	2 cut(s)	845, 877
Asp700I	GAANNNNTTC	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	4 cut(s)	67, 172, 302, 436
AsuII	TTCGAA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	319
AxyI	CCTNAGG	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	328
BbvI	GCAGC	4 cut(s)	73, 405, 598, 965
BccI	CCATC	6 cut(s)	295, 431, 458, 761, 836, 984
BciT130I	CCWGG	2 cut(s)	105, 804
BfmI	CTRYAG	1 cut(s)	856
BfuAI	ACCTGC	2 cut(s)	86, 646
BisI	GCNGC	4 cut(s)	87, 394, 612, 954
BlsI	GCNGC	4 cut(s)	88, 395, 613, 955
Bme1390I	CCNGG	2 cut(s)	105, 804
Bme18I	GGWCC	1 cut(s)	319
BmeRI	GACNNNNNGTC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	5 cut(s)	102, 320, 330, 558, 670
BmrFI	CCNGG	2 cut(s)	105, 804
BmrI	ACTGGG	1 cut(s)	950
BmsI	GCATC	3 cut(s)	722, 1126, 1163
BmuI	ACTGGG	1 cut(s)	950
BpmI	CTGGAG	2 cut(s)	423, 621
Bpu14I	TTCGAA	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	982
Bse1I	ACTGG	3 cut(s)	604, 812, 945
Bse21I	CCTNAGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	105, 804
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	2 cut(s)	889, 976
BseLI	CCNNNNNNNGG	1 cut(s)	982
BseMII	CTCAG	2 cut(s)	366, 543
BseNI	ACTGG	3 cut(s)	604, 812, 945
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	4 cut(s)	73, 405, 598, 965
BshFI	GGCC	2 cut(s)	258, 899
BshNI	GGYRCC	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	63, 270
BslFI	GGGAC	3 cut(s)	332, 690, 1027
BslI	CCNNNNNNNGG	1 cut(s)	982
BsmFI	GGGAC	3 cut(s)	332, 690, 1027
BsnI	GGCC	2 cut(s)	258, 899
Bsp119I	TTCGAA	1 cut(s)	163
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	5 cut(s)	139, 171, 199, 543, 668
BspANI	GGCC	2 cut(s)	258, 899
BspCNI	CTCAG	2 cut(s)	367, 544
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	5 cut(s)	102, 320, 330, 558, 670
BspMI	ACCTGC	2 cut(s)	86, 646
BspPI	GGATC	4 cut(s)	134, 166, 663, 676
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	604, 812, 945
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	5 cut(s)	139, 171, 199, 543, 668
BssNAI	GTATAC	1 cut(s)	513
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	105, 804
Bst4CI	ACNGT	5 cut(s)	56, 517, 649, 934, 1068
Bst6I	CTCTTC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	1073
BstDEI	CTNAG	4 cut(s)	203, 375, 552, 581
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	889, 976
BstKTI	GATC	5 cut(s)	142, 174, 202, 546, 671
BstMBI	GATC	5 cut(s)	139, 171, 199, 543, 668
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 366, 695, 710
BstNI	CCWGG	2 cut(s)	105, 804
BstNSI	RCATGY	1 cut(s)	1075
BstSCI	CCNGG	2 cut(s)	103, 802
BstSFI	CTRYAG	1 cut(s)	856
BstV1I	GCAGC	4 cut(s)	73, 405, 598, 965
BstX2I	RGATCY	2 cut(s)	171, 668
BstYI	RGATCY	2 cut(s)	171, 668
BstZ17I	GTATAC	1 cut(s)	513
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	258, 899
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	889, 976
BtsIMutI	CAGTG	4 cut(s)	511, 522, 819, 1073
BveI	ACCTGC	2 cut(s)	86, 646
Cac8I	GCNNGC	1 cut(s)	1073
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	57, 329
CviAII	CATG	9 cut(s)	121, 260, 323, 615, 818, 914, 950, 1072, 1109
CviQI	GTAC	2 cut(s)	57, 329
DdeI	CTNAG	4 cut(s)	203, 375, 552, 581
DpnI	GATC	5 cut(s)	141, 173, 201, 545, 670
DpnII	GATC	5 cut(s)	139, 171, 199, 543, 668
DriI	GACNNNNNGTC	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	182
Eco147I	AGGCCT	1 cut(s)	899
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	711
Eco81I	CCTNAGG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	945
EcoRII	CCWGG	2 cut(s)	103, 802
EcoT22I	ATGCAT	1 cut(s)	1141
FaeI	CATG	9 cut(s)	124, 263, 326, 618, 821, 917, 953, 1075, 1112
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 560, 592
FaqI	GGGAC	3 cut(s)	332, 690, 1027
FatI	CATG	9 cut(s)	120, 259, 322, 614, 817, 913, 949, 1071, 1108
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	4 cut(s)	87, 394, 612, 954
FokI	GGATG	2 cut(s)	896, 963
Fsp4HI	GCNGC	4 cut(s)	87, 394, 612, 954
GluI	GCNGC	4 cut(s)	87, 394, 612, 954
GsuI	CTGGAG	2 cut(s)	423, 621
HaeIII	GGCC	2 cut(s)	258, 899
HapII	CCGG	2 cut(s)	63, 270
Hin1II	CATG	9 cut(s)	124, 263, 326, 618, 821, 917, 953, 1075, 1112
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	4 cut(s)	165, 524, 603, 774
HpaII	CCGG	2 cut(s)	63, 270
HphI	GGTGA	4 cut(s)	67, 172, 302, 436
Hpy166II	GTNNAC	6 cut(s)	409, 513, 733, 853, 909, 930
Hpy188I	TCNGA	2 cut(s)	376, 1190
Hpy188III	TCNNGA	5 cut(s)	169, 270, 402, 764, 893
Hpy8I	GTNNAC	6 cut(s)	409, 513, 733, 853, 909, 930
HpyAV	CCTTC	6 cut(s)	60, 287, 308, 415, 686, 1151
HpyCH4III	ACNGT	5 cut(s)	56, 517, 649, 934, 1068
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 366, 695, 710
HpyF3I	CTNAG	4 cut(s)	203, 375, 552, 581
Hsp92II	CATG	9 cut(s)	124, 263, 326, 618, 821, 917, 953, 1075, 1112
Kpn2I	TCCGGA	1 cut(s)	269
KpnI	GGTACC	1 cut(s)	332
Kzo9I	GATC	5 cut(s)	139, 171, 199, 543, 668
LmnI	GCTCC	4 cut(s)	562, 695, 710, 972
Lsp1109I	GCAGC	4 cut(s)	73, 405, 598, 965
LweI	GCATC	3 cut(s)	722, 1126, 1163
MaeIII	GTNAC	2 cut(s)	775, 875
MalI	GATC	5 cut(s)	141, 173, 201, 545, 670
MboI	GATC	5 cut(s)	139, 171, 199, 543, 668
MboII	GAAGA	6 cut(s)	169, 553, 577, 580, 881, 1138
MflI	RGATCY	2 cut(s)	171, 668
MluCI	AATT	9 cut(s)	152, 273, 333, 474, 720, 781, 834, 945, 1005
MlyI	GAGTC	2 cut(s)	612, 783
Mph1103I	ATGCAT	1 cut(s)	1141
MroI	TCCGGA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	3 cut(s)	417, 738, 993
MslI	CAYNNNNRTG	1 cut(s)	1171
MspI	CCGG	2 cut(s)	63, 270
MspR9I	CCNGG	2 cut(s)	105, 804
MvaI	CCWGG	2 cut(s)	105, 804
MwoI	GCNNNNNNNGC	4 cut(s)	236, 366, 695, 710
NdeII	GATC	5 cut(s)	139, 171, 199, 543, 668
NlaIII	CATG	9 cut(s)	124, 263, 326, 618, 821, 917, 953, 1075, 1112
NlaIV	GGNNCC	5 cut(s)	102, 320, 330, 558, 670
NmuCI	GTSAC	1 cut(s)	775
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	1 cut(s)	1075
NspV	TTCGAA	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	1075
PaqCI	CACCTGC	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	899
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	165, 524
PflMI	CCANNNNNTGG	1 cut(s)	982
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	88, 395, 613, 955
PleI	GAGTC	2 cut(s)	611, 782
PpsI	GAGTC	2 cut(s)	611, 782
Psp6I	CCWGG	2 cut(s)	103, 802
PspGI	CCWGG	2 cut(s)	103, 802
PspN4I	GGNNCC	5 cut(s)	102, 320, 330, 558, 670
PspPI	GGNCC	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	171, 668
RsaI	GTAC	2 cut(s)	58, 330
RsaNI	GTAC	2 cut(s)	57, 329
RseI	CAYNNNNRTG	1 cut(s)	1171
SaqAI	TTAA	3 cut(s)	417, 738, 993
SatI	GCNGC	4 cut(s)	87, 394, 612, 954
Sau3AI	GATC	5 cut(s)	139, 171, 199, 543, 668
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	2 cut(s)	612, 783
ScrFI	CCNGG	2 cut(s)	105, 804
SfaNI	GCATC	3 cut(s)	722, 1126, 1163
SfcI	CTRYAG	1 cut(s)	856
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	1171
SphI	GCATGC	1 cut(s)	1075
Sse9I	AATT	9 cut(s)	152, 273, 333, 474, 720, 781, 834, 945, 1005
SseBI	AGGCCT	1 cut(s)	899
SspI	AATATT	2 cut(s)	252, 388
StuI	AGGCCT	1 cut(s)	899
StyD4I	CCNGG	2 cut(s)	103, 802
TaaI	ACNGT	5 cut(s)	56, 517, 649, 934, 1068
TaqI	TCGA	6 cut(s)	138, 163, 247, 455, 546, 1000
TasI	AATT	9 cut(s)	152, 273, 333, 474, 720, 781, 834, 945, 1005
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	165, 524
Tru1I	TTAA	3 cut(s)	417, 738, 993
Tru9I	TTAA	3 cut(s)	417, 738, 993
TscAI	CASTG	4 cut(s)	511, 522, 819, 1073
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	4 cut(s)	86, 393, 611, 953
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	6 cut(s)	240, 276, 578, 775, 938, 1090
TspGWI	ACGGA	3 cut(s)	357, 426, 661
TspRI	CASTG	4 cut(s)	511, 522, 819, 1073
Van91I	CCANNNNNTGG	1 cut(s)	982
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	2 cut(s)	781, 945
XceI	RCATGY	1 cut(s)	1075
XmiI	GTMKAC	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.