Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005326

Physical Location & Seq

Genomic Coordinates Forward (+)

7291358 .. 7304889

Gene Structure 13532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTCGATAGGAAATTCATATCCTTTATTTAATATTTTGATGAGCAGAATTGTTGAGAGCGTTGGTGAAGGTGTGACAGACATGAAAGAAGGGGATCATGTGATCCCTATTTTCAACGGAGAGTGCGGTTACTGCATCTGCTGCAGGCATCAGAAAACTAACATTTGCAACAACTTTGGAGTAAACCCAATGAAGAGGGTGATGAACAGCGACGGTAAAACAAGGTTCTCAATAATAACAAAGGAGGGTGACAAAAAACCCATATATCATTTTCTTAACACTTCAACCTTCAGCGAGTACACAGTTCTTGAGTCCGCTTGTGTTGTCAAGATTGACTCGGAAGCTCCCCTCAAGAAGATGACGTTGCTCAGTTGCGGTGCTTCAACTGGAGTTGGTGCTGCATGGAATACTGCTGATGTTCAACCTGGCTCAACAGTCGCCATTTTTGGTTTAGGTGCCATTGGACTTGCCGTTGCTGAAGGAGCCAAAGCTAGAGGAGCATCTACAATAATTGGTGTTGACATGAACCCTAATAAATTCATCAAAGGCCAAGCAATGGGAGTCACAGATTTCATAGACACCCGCGACCCAGGAAAGCCTTTGCATGAGAGAATCAGGGAAATAACAAAAGGAGGTGTGGACTATAGCTTTGAGTGTGTAGGAAACTCCGATGTTCTCCGGGAAGCCTTTCTTTCCACACATGAGGGATGGGGGTGTACTGTGATATTGGGAATTCATGCAACACCAAAAATGCTTCCCCTCCATCCAATGGAGTTGTTTCATGGTCGAGGAATTATTGGATCTGTATTTGGAGGCTTCAAAGGGAAGAGCCAACTCCCCCGTTTTGCCAAAGAATGCATGCAAGGGGTGGTCGATTTAGACGAGTTCATAACACATGAGCTTCCCTTTGAGAAGATAAATGATGCGTTTAAGTTGCTCGTTGAAGGCCAGTCACTGAGATGCGTTCTACACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

325

Amino Acids

35.32

Weight (kDa)

6.55

Isoelectric Point (pI)

25.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	17 - 111	5.4e-07	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	153 - 276	4.3e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32780 AT1G64710 AT1G64710 AT1G64710
fragaria_vesca	FvH4_5g10640 FvH4_5g10640 FvH4_5g10640
malus_domestica	MD06G1121600.v1.1
prunus_persica	Prupe.5G132300_v2.0.a1
pyrus_communis	pycom06g11270
rosa_chinensis	RchiOBHm_Chr7g0187491 RchiOBHm_Chr7g0187501
rosa_laevigata	RLG00000004776 RLG00000004777
rosa_multiflora	Rmu_sc0001230.1_g000002 Rmu_sc0019127.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267380 Rroxscaffold_3G00267390
rosa_rugosa	Rorug06G0482000
rosa_samantha	Rh7AG086500 Rh7AG086700 Rh7BG088100 Rh7BG088200 Rh7CG087400 Rh7CG087500 Rh7DG089000 Rh7DG089100
rosa_wichuraiana	Rw7G007630 Rw7G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccB7I	CCANNNNNTGG	2 cut(s)	556, 769
AccII	CGCG	1 cut(s)	585
AciI	CCGC	4 cut(s)	126, 315, 375, 583
AclWI	GGATC	3 cut(s)	97, 102, 808
AcsI	RAATTY	3 cut(s)	13, 536, 732
AcuI	CTGAAG	2 cut(s)	274, 498
AfaI	GTAC	2 cut(s)	299, 718
AfiI	CCNNNNNNNGG	2 cut(s)	556, 769
AgsI	TTSAA	6 cut(s)	115, 285, 384, 422, 820, 944
AjnI	CCWGG	2 cut(s)	424, 589
AluBI	AGCT	4 cut(s)	344, 491, 648, 901
AluI	AGCT	4 cut(s)	344, 491, 648, 901
AlwI	GGATC	3 cut(s)	97, 102, 808
AlwNI	CAGNNNCTG	1 cut(s)	955
AoxI	GGCC	2 cut(s)	547, 946
ApeKI	GCWGC	2 cut(s)	141, 398
ApoI	RAATTY	3 cut(s)	13, 536, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
Asp700I	GAANNNNTTC	1 cut(s)	687
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	77, 211, 260
BanI	GGYRCC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	128, 385
BccI	CCATC	2 cut(s)	702, 771
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	426, 591
BcnI	CCSGG	1 cut(s)	680
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	2 cut(s)	142, 643
BisI	GCNGC	2 cut(s)	142, 399
BlsI	GCNGC	2 cut(s)	143, 400
Bme1390I	CCNGG	3 cut(s)	426, 591, 680
BmiI	GGNNCC	2 cut(s)	457, 484
BmrFI	CCNGG	3 cut(s)	426, 591, 680
BmsI	GCATC	5 cut(s)	144, 157, 509, 913, 950
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	329, 335
BpuMI	CCSGG	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 769
Bse1I	ACTGG	2 cut(s)	391, 949
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	426, 591
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	2 cut(s)	713, 763
BseLI	CCNNNNNNNGG	2 cut(s)	556, 769
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	382, 947
BseNI	ACTGG	2 cut(s)	391, 949
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	128, 385
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	549, 948
BshNI	GGYRCC	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	2 cut(s)	556, 769
BsmI	GAATGC	1 cut(s)	860
BsnI	GGCC	2 cut(s)	549, 948
Bsp143I	GATC	3 cut(s)	94, 102, 800
BspACI	CCGC	4 cut(s)	126, 315, 375, 583
BspANI	GGCC	2 cut(s)	549, 948
BspCNI	CTCAG	2 cut(s)	381, 948
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	457, 484
BspMAI	CTGCAG	1 cut(s)	146
BspPI	GGATC	3 cut(s)	97, 102, 808
BspQI	GCTCTTC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	391, 949
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	3 cut(s)	94, 102, 800
Bst2UI	CCWGG	2 cut(s)	426, 591
Bst4CI	ACNGT	4 cut(s)	215, 304, 436, 721
Bst6I	CTCTTC	2 cut(s)	188, 821
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	146, 860
BstDEI	CTNAG	2 cut(s)	368, 956
BstF5I	GGATG	2 cut(s)	713, 763
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	97, 105, 803
BstMBI	GATC	3 cut(s)	94, 102, 800
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 141, 482, 497
BstNI	CCWGG	2 cut(s)	426, 591
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	3 cut(s)	424, 589, 678
BstSFI	CTRYAG	2 cut(s)	142, 643
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	128, 385
BstX2I	RGATCY	1 cut(s)	800
BstYI	RGATCY	1 cut(s)	800
BsuRI	GGCC	2 cut(s)	549, 948
BtsCI	GGATG	2 cut(s)	713, 763
BtsIMutI	CAGTG	1 cut(s)	953
Cac8I	GCNNGC	2 cut(s)	146, 860
CaiI	CAGNNNCTG	1 cut(s)	955
Csp6I	GTAC	2 cut(s)	298, 717
CviQI	GTAC	2 cut(s)	298, 717
DdeI	CTNAG	2 cut(s)	368, 956
DpnI	GATC	3 cut(s)	96, 104, 802
DpnII	GATC	3 cut(s)	94, 102, 800
Eam1104I	CTCTTC	2 cut(s)	188, 821
EarI	CTCTTC	2 cut(s)	188, 821
Eco57I	CTGAAG	2 cut(s)	274, 498
EcoRI	GAATTC	1 cut(s)	732
EcoRII	CCWGG	2 cut(s)	424, 589
EcoT22I	ATGCAT	1 cut(s)	860
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FauI	CCCGC	1 cut(s)	590
Fnu4HI	GCNGC	2 cut(s)	142, 399
FokI	GGATG	2 cut(s)	720, 750
Fsp4HI	GCNGC	2 cut(s)	142, 399
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	2 cut(s)	142, 399
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	549, 948
HapII	CCGG	1 cut(s)	679
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	4 cut(s)	311, 335, 561, 612
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	3 cut(s)	77, 211, 260
Hpy166II	GTNNAC	5 cut(s)	184, 300, 520, 640, 717
Hpy188I	TCNGA	3 cut(s)	153, 340, 670
Hpy188III	TCNNGA	3 cut(s)	308, 328, 352
Hpy8I	GTNNAC	5 cut(s)	184, 300, 520, 640, 717
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	5 cut(s)	62, 83, 298, 473, 938
HpyCH4III	ACNGT	4 cut(s)	215, 304, 436, 721
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	8 cut(s)	135, 144, 168, 401, 604, 740, 858, 862
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 141, 482, 497
HpyF3I	CTNAG	2 cut(s)	368, 956
HpySE526I	ACGT	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	94, 102, 800
LguI	GCTCTTC	1 cut(s)	821
LmnI	GCTCC	3 cut(s)	349, 482, 497
LpnPI	CCDG	9 cut(s)	130, 372, 411, 438, 576, 601, 603, 692, 962
Lsp1109I	GCAGC	2 cut(s)	128, 385
LweI	GCATC	5 cut(s)	144, 157, 509, 913, 950
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	5 cut(s)	73, 128, 248, 562, 951
MalI	GATC	3 cut(s)	96, 104, 802
MboI	GATC	3 cut(s)	94, 102, 800
MboII	GAAGA	4 cut(s)	205, 367, 838, 925
MflI	RGATCY	1 cut(s)	800
MluCI	AATT	6 cut(s)	13, 48, 510, 536, 732, 792
MlyI	GAGTC	3 cut(s)	320, 329, 570
MnlI	CCTC	9 cut(s)	189, 238, 359, 488, 626, 697, 770, 782, 806
Mph1103I	ATGCAT	1 cut(s)	860
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	3 cut(s)	30, 276, 930
MslI	CAYNNNNRTG	1 cut(s)	958
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	3 cut(s)	426, 591, 680
Mva1269I	GAATGC	1 cut(s)	860
MvaI	CCWGG	2 cut(s)	426, 591
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	132, 141, 482, 497
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	3 cut(s)	94, 102, 800
NlaIV	GGNNCC	2 cut(s)	457, 484
NmuCI	GTSAC	4 cut(s)	73, 248, 562, 951
NsiI	ATGCAT	1 cut(s)	860
NspI	RCATGY	1 cut(s)	862
PaeI	GCATGC	1 cut(s)	862
PciSI	GCTCTTC	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PctI	GAATGC	1 cut(s)	860
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	612
PflMI	CCANNNNNTGG	2 cut(s)	556, 769
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	2 cut(s)	143, 400
PleI	GAGTC	3 cut(s)	319, 329, 569
PpsI	GAGTC	3 cut(s)	319, 329, 569
Psp6I	CCWGG	2 cut(s)	424, 589
PspGI	CCWGG	2 cut(s)	424, 589
PspN4I	GGNNCC	2 cut(s)	457, 484
PstI	CTGCAG	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	955
PsuI	RGATCY	1 cut(s)	800
RsaI	GTAC	2 cut(s)	299, 718
RsaNI	GTAC	2 cut(s)	298, 717
RseI	CAYNNNNRTG	1 cut(s)	958
SapI	GCTCTTC	1 cut(s)	821
SaqAI	TTAA	3 cut(s)	30, 276, 930
SatI	GCNGC	2 cut(s)	142, 399
Sau3AI	GATC	3 cut(s)	94, 102, 800
SchI	GAGTC	3 cut(s)	320, 329, 570
ScrFI	CCNGG	3 cut(s)	426, 591, 680
SfaNI	GCATC	5 cut(s)	144, 157, 509, 913, 950
SfcI	CTRYAG	2 cut(s)	142, 643
SmiMI	CAYNNNNRTG	1 cut(s)	958
SmlI	CTYRAG	2 cut(s)	308, 350
SmoI	CTYRAG	2 cut(s)	308, 350
SphI	GCATGC	1 cut(s)	862
Sse9I	AATT	6 cut(s)	13, 48, 510, 536, 732, 792
SsiI	CCGC	4 cut(s)	126, 315, 375, 583
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	424, 589, 678
TaaI	ACNGT	4 cut(s)	215, 304, 436, 721
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	3 cut(s)	5, 787, 873
TasI	AATT	6 cut(s)	13, 48, 510, 536, 732, 792
TatI	WGTACW	2 cut(s)	297, 716
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	3 cut(s)	30, 276, 930
Tru9I	TTAA	3 cut(s)	30, 276, 930
TscAI	CASTG	1 cut(s)	960
TseFI	GTSAC	4 cut(s)	73, 248, 562, 951
TseI	GCWGC	2 cut(s)	141, 398
Tsp45I	GTSAC	4 cut(s)	73, 248, 562, 951
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	960
Van91I	CCANNNNNTGG	2 cut(s)	556, 769
XapI	RAATTY	3 cut(s)	13, 536, 732
XceI	RCATGY	1 cut(s)	862
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.